Lakehouse-native graph engine with git-style workflows https://omnigraph.dev
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Claude 7b1b0b5b75
research: fix lance-autoresearch correctness bugs surfaced by code review
A code review pass found a cluster of real bugs in metrics and contract;
fixing them before any agent loop runs against this harness.

Critical metric bug:
- harness-common::sysinfo::peak_rss_mb read VmPeak (virtual address space
  high-water-mark, includes mmap'd files / guard pages / untouched
  allocations) instead of VmHWM (resident pages high-water-mark). The
  function name and HARNESS.md contract both promised RSS. Every
  peak_mem_mb row logged under the old code was virtual peak, not RSS.

Correctness contract bug:
- reference::topk_consistent's tie-tolerance had a flawed neighbor-scan
  check: when the K-th distance fell in a multi-way tie, agent and
  reference could legally return different K-sized subsets of the tied
  band (heap eviction order vs. sort stability), and the neighbor scan
  required both endpoints to be present, false-negativing legitimate
  cases. Simplified to a positional distance-tolerance check; ids at the
  same rank may differ silently because the distance match within tol
  constrains the swap to a 2*tol band. Diagnostic comment explains the
  rationale.

API hygiene:
- Removed dead PqKernel::shape() and ScalarReference::shape() — declared
  in the public API contract (program.md, kernels.rs comment), required
  to be stable, never called by the bench / benches / inputs / reference.
  Now the contract reflects what the bench actually uses.
- Removed dead `anyhow` workspace dependency.

Determinism:
- PRNG seed mixing now uses the SplitMix64 finalizer per part instead of
  raw XOR. Raw XOR is commutative and small-constant collisions are
  reachable; mix_seeds iterates the finalizer once per ingredient so
  distinct (seed, shape, kind) tuples produce distinct streams with
  vanishingly small collision probability.

License headers:
- kernels.rs SPDX changed from Apache-2.0 to MIT OR Apache-2.0 to match
  the crate's Cargo.toml license field (the rest of the crate is dual-
  licensed). Added matching SPDX headers to reference.rs and inputs.rs.

Doc cleanups:
- design.md: replaced the broken relative link
  `../../docs/research/llm-evolutionary-sampling.md` (which resolved inside
  lance-autoresearch where the note doesn't live) with a path-explained
  reference noting the note lives in the parent OmniGraph repo and won't
  ship on extraction.
- README.md: clarified that the target table mixes a single landed target
  with a candidate roadmap — they have no code yet.
- HARNESS.md: added exit code 1 (internal error) to the exit-code summary;
  was documented in run_experiment.rs but not in the loop contract.
- adding-a-target.md: dropped the misleading "cp -r plus surgical edits"
  framing — the workflow rewrites 7 files; what's inherited is Cargo
  manifest, license headers, workspace registration, and shared utilities.

Verified end-to-end: cargo build / clippy / test all green. Baseline
trial runs `correctness: pass` exit 0 in ~34s (peak_mem_mb now reads
RSS — same workload reports 91 MB, plausibly correct given the temporary
fixture-construction buffers).

https://claude.ai/code/session_01Aq8kBUcjmEPobcEufnWbW5
2026-05-15 00:55:57 +00:00
.cargo Raise LANCE_MEM_POOL_SIZE to 1 GB in .cargo/config.toml 2026-04-19 22:27:49 +03:00
.context Investigate Lance MergeInsertBuilder CAS granularity (MR-766 prereq) 2026-04-28 23:30:17 +00:00
.github branch-protection: declarative policy + apply script (#89) 2026-05-13 17:38:20 +03:00
crates schema-lint chassis v0: code-tagged diagnostics (MR-694) (#87) 2026-05-13 17:08:18 +03:00
docker Initial public Omnigraph repository 2026-04-10 20:49:41 +03:00
docs docs/research: expand Cluster A with non-distance autoresearch targets 2026-05-14 23:41:40 +00:00
research/lance-autoresearch research: fix lance-autoresearch correctness bugs surfaced by code review 2026-05-15 00:55:57 +00:00
scripts branch-protection: declarative policy + apply script (#89) 2026-05-13 17:38:20 +03:00
.dockerignore Initial public Omnigraph repository 2026-04-10 20:49:41 +03:00
.gitignore chore: gitignore the mdrip/ markdown snapshot cache 2026-05-12 17:02:14 -07:00
AGENTS.md branch-protection: declarative policy + apply script (#89) 2026-05-13 17:38:20 +03:00
Cargo.lock release: prepare omnigraph 0.4.2 2026-05-10 14:02:28 +00:00
Cargo.toml research: lance-autoresearch — PQ L2 kernel autoresearch harness 2026-05-14 22:38:39 +00:00
CLAUDE.md Add AGENTS.md as canonical agent guide; symlink CLAUDE.md to it 2026-04-28 23:10:09 +02:00
CODE_OF_CONDUCT.md Initial public Omnigraph repository 2026-04-10 20:49:41 +03:00
CONTRIBUTING.md Merge remote-tracking branch 'origin/main' into ragnorc/explore-api 2026-04-18 20:24:39 +02:00
Dockerfile Dockerfile: switch base from Docker Hub to ECR Public 2026-04-20 13:46:23 +03:00
LICENSE Initial public Omnigraph repository 2026-04-10 20:49:41 +03:00
og-cheet-sheet.md Add query lint and check commands 2026-04-13 00:37:44 +03:00
omnigraph.example.yaml example config: use graphs / cli.graph, matching the MR-603 rename 2026-04-18 23:40:35 +03:00
openapi.json release: prepare omnigraph 0.4.2 2026-05-10 14:02:28 +00:00
README.md Update README.md 2026-05-12 08:17:31 -07:00
rust-toolchain.toml Initial public Omnigraph repository 2026-04-10 20:49:41 +03:00
SECURITY.md Initial public Omnigraph repository 2026-04-10 20:49:41 +03:00

Omnigraph

License: MIT Rust Crates.io CI

Lakehouse-native graph engine with git-style workflows.

Branch, commit, and merge typed graph data like source code. Multi-modal, self-hosted, open source.

Built on Rust, Arrow, DataFusion and Lance.

Join the Omnigraph Slack community

Use Cases

  • Company brains
  • Context graphs
  • Backbone for multi-agent research
  • Incident response graphs
  • Compliance & audit graphs
  • Enterprise knowledge systems

Capabilities

  • Typed schema, typed queries, and typed mutations
  • Schema-as-code, query validation and linting
  • Git-style graph workflows: branches, commits, merges, and transactional runs
  • Local, on-prem & cloud S3-native storage with snapshot-pinned reads
  • Graph traversal + text, fuzzy, BM25, vector, and RRF search in one runtime
  • Policy-as-code for server-side access control
  • Single CLI for multiple deployments

Quick Install

curl -fsSL https://raw.githubusercontent.com/ModernRelay/omnigraph/main/scripts/install.sh | bash

This installs omnigraph and omnigraph-server into ~/.local/bin from published release binaries.

Or install with Homebrew:

brew tap ModernRelay/tap
brew install ModernRelay/tap/omnigraph

For starter graphs and agent skills to bootstrap and operate Omnigraph, see ModernRelay/omnigraph-cookbooks.

One-Command Local RustFS Bootstrap

curl -fsSL https://raw.githubusercontent.com/ModernRelay/omnigraph/main/scripts/local-rustfs-bootstrap.sh | bash

That bootstrap:

  • starts RustFS on 127.0.0.1:9000
  • creates a bucket and S3-backed repo
  • loads the checked-in context fixture
  • launches omnigraph-server on 127.0.0.1:8080

Docker must be installed and running first.

The RustFS bootstrap prefers the rolling edge binaries and only falls back to source builds when release assets are unavailable.

If a previous run left objects under the same repo prefix but did not finish initializing the repo, rerun with RESET_REPO=1 or set PREFIX to a new value.

Common Commands

The same URI works for local paths, s3://…, or http://host:port.

omnigraph init   --schema ./schema.pg ./repo.omni
omnigraph load   --data   ./data.jsonl ./repo.omni
omnigraph read   --query  ./queries.gq --name get_person --params '{"name":"Alice"}' ./repo.omni
omnigraph change --query  ./queries.gq --name insert_person --params '{"name":"Mina"}' ./repo.omni
omnigraph branch create --from main feature-x ./repo.omni
omnigraph branch merge  feature-x --into main ./repo.omni

See docs/cli.md for schema apply, snapshots, ingest, runs, and policy commands.

Docs

Build And Test

cargo build --workspace
cargo check --workspace
cargo test --workspace

Notes:

  • Rust stable toolchain, edition 2024
  • CI runs cargo test --workspace --locked
  • Full CI and some local test flows require protobuf-compiler
  • S3 integration tests expect an S3-compatible endpoint such as RustFS

Workspace Crates

  • crates/omnigraph-compiler: shared schema/query parser, typechecker, catalog, and IR lowering
  • crates/omnigraph: storage/runtime, branching, merge, change detection, and query execution
  • crates/omnigraph-cli: CLI for init/load/ingest/read/change/branch/snapshot/export/policy operations
  • crates/omnigraph-server: Axum HTTP server for remote reads, changes, ingest, export, branches, commits, and runs

Contributing

Please open an issue, spec, or design discussion before sending large code changes. Design feedback and concrete problem statements are the fastest way to collaborate on the roadmap.

Community

Join the Omnigraph Slack community to ask questions, share feedback, and follow development.