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12 commits

Author SHA1 Message Date
Ragnor Comerford
cc2412dc65
Rename repo terminology to graph (#118)
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2026-05-24 16:46:00 +01:00
Andrew Altshuler
3551e0d40e
chore(lance): bump 4.0.0 → 6.0.1 (DataFusion 52→53, Arrow 57→58) (#111)
* tests: add lance_surface_guards pre-flight pins for the v6 bump

Land 8 named guards in a new test file that pin Lance API surfaces
OmniGraph relies on. Each guard turns a silent-break risk (variant
rename, struct restructure, async-flip) into a red CI bar instead of
runtime drift.

Guards (mapped to the silent-break inventory from the v6 migration plan):

  Runtime (#[tokio::test]):
  1. lance_error_too_much_write_contention_variant_exists — pins the
     variant referenced by db/manifest/publisher.rs::map_lance_publish_error.
  2. manifest_location_field_shape — pins .path/.size/.e_tag/.naming_scheme
     types and ManifestLocation accessor returning &Self (the access
     pattern at db/manifest/metadata.rs:84-88).
  6. write_params_default_does_not_set_storage_version — confirms our
     explicit V2_2 pin remains load-bearing (blob v2 requirement).

  Compile-only async fns (#[allow(...)] + unimplemented!() placeholders;
  never run, but cargo build --tests enforces the API shape):
  3. checkout_version + restore chain — pins the recovery rollback hammer
     at db/manifest/recovery.rs:505-522.
  4. DatasetBuilder::from_namespace().with_branch().with_version().load()
     — pins the namespace builder chain at db/manifest/namespace.rs:162-174.
  5. MergeInsertBuilder fluent chain — pins the manifest CAS at
     db/manifest/publisher.rs:370-391, including the return shape
     (Arc<Dataset>, MergeStats).
  7. compact_files(&mut ds, CompactionOptions, None) — pins
     db/omnigraph/optimize.rs:107.
  8. DeleteResult { new_dataset, num_deleted_rows } — pins the inline
     delete result shape (MR-A will repurpose this guard to the staged
     two-phase variant once Lance #6658 migration lands).

This is commit 1 of the chore/lance-6.0.1 migration. Cargo bump
follows in commit 2 (will trigger the guards under v6 if any surface
drifted).

Per the migration plan at ~/.claude/plans/shimmering-percolating-duckling.md
(written this session). Two guards from the plan deferred to follow-up:
  - manifest_cas_returns_row_level_contention_variant (full publisher
    race integration test — needs harness scaffolding)
  - table_version_metadata_byte_compatible_with_v4 (TableVersionMetadata
    is pub(crate); requires test reach extension).

Verified on v4: cargo test -p omnigraph-engine --test lance_surface_guards
passes 3/3 runtime tests; cargo build -p omnigraph-engine --tests
compiles all 5 compile-only guards clean.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* chore(deps): bump Lance 4.0.0 → 6.0.1, DataFusion 52 → 53, Arrow 57 → 58

The Cargo bump itself. Source is intentionally untouched — this commit
will not compile. The compile errors are the work-list for subsequent
commits on this branch.

Lance updates: lance + 7 sub-crates 4.0.0 → 6.0.1. Transitive churn:
  + lance-tokenizer v6.0.1 (vendored tokenizer per Lance PR #6512)
  + object_store 0.13.x (Lance 6 brings it transitively; our explicit
    pin stays at 0.12.5 for now — revisit in stages if diamond bites)
  - tantivy* crates (replaced by lance-tokenizer)

Compile error landscape on this commit (11 errors):
  • 1× E0432: `lance_index::DatasetIndexExt` import (Lance PR #6280
    moved it to lance::index). Sites: table_store.rs:20,
    db/manifest.rs:37 (the second site was missed by the pre-flight
    inventory).
  • 8× E0599: `create_index_builder` / `load_indices` missing on
    `lance::Dataset` — all downstream of the DatasetIndexExt move.
    Once the import is corrected on table_store.rs and db/manifest.rs,
    these resolve automatically.
  • 2× E0063: missing field `is_only_declared` in `DescribeTableResponse`
    initializer at db/manifest/namespace.rs:221, 364. New Lance
    namespace field per the v5 namespace restructure (PR #6186).

Surface guards (lance_surface_guards.rs, commit d571fa8) all still
compile + the 3 runtime ones pass on v6 — none of the silent-break
surfaces drifted. That's the load-bearing observation: the publisher
CAS chain, ManifestLocation field shape, checkout_version/restore,
DatasetBuilder fluent chain, MergeInsertBuilder return shape,
WriteParams::default, compact_files signature, and DeleteResult
fields are all v6-stable.

Next commits address the 11 errors per the migration plan stages
3-8.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* imports: move DatasetIndexExt to lance::index (Lance PR #6280)

Lance 5.0 (PR #6280) moved `DatasetIndexExt` out of `lance-index` into
`lance::index`. `is_system_index` and `IndexType` stayed in `lance-index`.

Mechanical update of 6 import sites:
  crates/omnigraph/src/table_store.rs:20 — split into two `use` lines
  crates/omnigraph-server/tests/server.rs:10 — was traits::DatasetIndexExt
  crates/omnigraph/tests/search.rs:6
  crates/omnigraph/tests/branching.rs:7
  crates/omnigraph/tests/failpoints.rs:467
  crates/omnigraph-cli/tests/cli.rs:3 — was traits::DatasetIndexExt

All 9 E0599 cascading errors on .create_index_builder / .load_indices
resolve once the trait is back in scope.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* namespace: add is_only_declared field to DescribeTableResponse

Lance namespace 6.0.0 added `is_only_declared: Option<bool>` to
`DescribeTableResponse` (lance-namespace-reqwest-client 0.7+ via the
v5.0 namespace API restructure, Lance PR #6186). Set to `Some(false)`
because every table BranchManifestNamespace returns from describe_table
is materialized — the manifest snapshot only includes entries for
tables we've already opened via Dataset::open.

Two sites in db/manifest/namespace.rs (BranchManifestNamespace +
StagedTableNamespace impls of LanceNamespace::describe_table).

Closes the last two compile errors from the v6 bump in the engine lib.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* cargo: add lance to omnigraph-cli + omnigraph-server dev-deps

Stage 3 moved DatasetIndexExt imports from `lance-index` to `lance::index`
in the cli and server test crates. Both crates only had `lance-index`
in their dev-dependencies; add `lance` alongside so the new path
resolves.

This is the last compile-error fix from the v6 bump — `cargo build
--workspace --tests` is now green.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* docs: refresh Lance alignment audit for v6.0.1; bump surveyed version

Per CLAUDE.md maintenance rule 2 (same-PR docs):

- docs/dev/lance.md: replace the v4.0.1 alignment audit stanza with
  the v6.0.1 audit. Captures every v5/v6 finding from this PR (the
  DatasetIndexExt move, DescribeTableResponse.is_only_declared,
  MergeInsertBuilder return shape, ManifestLocation field shape,
  LanceFileVersion::default flip, file-reader async, tokenizer
  vendor, Lance #6658/#6666/#6877 status). Cross-references each
  guard in tests/lance_surface_guards.rs.

- AGENTS.md: bump "Storage substrate: Lance 4.x" → "Lance 6.x".
  Note: surveyed crate version stays at 0.4.2 — substrate version
  bumps are independent of OmniGraph's release version.

- crates/omnigraph/src/storage_layer.rs: update the trait module-level
  doc-comment to reflect that Lance #6658 closed 2026-05-14 and
  delete_where two-phase migration is MR-A (the next follow-up).
  #6666 stays open; create_vector_index inline residual stays.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* tests: silence clippy::diverging_sub_expression on compile-only guards

The five `_compile_*` async fns in lance_surface_guards.rs use
`let ds: Dataset = unimplemented!()` as a placeholder so type inference
can chase the method chain we want to pin, without ever running the
function. Clippy's `diverging_sub_expression` lint flags this pattern
because the RHS diverges; that's the entire point. Added to the
per-fn `#[allow(...)]` list, alongside dead_code / unreachable_code /
unused_variables / unused_mut already there.

No behavior change. cargo test -p omnigraph-engine --test
lance_surface_guards still 3/3 green.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* docs: correct #6658 status — closed but API ships in Lance v7.x, not v6.0.1

The audit stanza in docs/dev/lance.md and the storage_layer.rs trait
doc-comment both implied the public DeleteBuilder::execute_uncommitted
API shipped with Lance 6.0.1. It did not. Issue #6658 closed
2026-05-14, but binary search across the release stream confirms:

  v6.0.1             no pub async fn execute_uncommitted on DeleteBuilder
  v6.1.0-rc.1       
  v7.0.0-beta.5     
  v7.0.0-beta.10     first appearance
  v7.0.0-rc.1       

So MR-A (delete two-phase migration) is gated on the Lance v7.x bump,
not on this PR. v7.0.0-rc.1 dropped 2026-05-21; GA likely within a
week.

No behavior change. Doc-only correction.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* ci(lib): bump recursion_limit to 256 — Lance 6 trait depth on Linux

Lance 6's heavier trait surface around futures/streams in storage_layer.rs's
staged-write API pushes the rustc trait-resolution recursion limit past
the default 128 on Linux builds. CI on PR #111 surfaced this in both
`Test Workspace` and `Test omnigraph-server --features aws`:

  error: queries overflow the depth limit!
    = help: consider increasing the recursion limit by adding a
      `#![recursion_limit = "256"]` attribute to your crate (`omnigraph`)
    = note: query depth increased by 130 when computing layout of
      `{async block@crates/omnigraph/src/storage_layer.rs:697:5: 697:10}`

(The async block is `stage_create_btree_index`'s body — its return type
is several layers of `impl Future<Output=Result<StagedHandle>>` deep on
top of Lance's own builder return types.)

Local macOS builds happened to short-circuit before tripping the limit,
which is why this didn't surface during the v6 bump sequence. The fix
rustc itself suggests is one line at the crate root.

No behavior change. Revisit if a future Lance bump stops needing it.

Verified: `cargo build --locked -p omnigraph-server --features aws`
compiles clean.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-23 00:42:29 +01:00
Andrew Altshuler
aadfa11ecb
schema: HTTP allow_data_loss exposure + e2e drop coverage (MR-694 follow-up) (#107)
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The schema-lint chassis v1.2 (PR #100) shipped `--allow-data-loss` on
the CLI, but `SchemaApplyRequest` had no equivalent field — Hard-mode
drops were CLI-only. This commit closes that feature gap and adds e2e
test coverage for drop modes across HTTP + CLI, plus data preservation
on additive apply, plus a CLI↔SDK plan-parity assertion.

Feature gap closed:

- `crates/omnigraph-server/src/api.rs` — added `allow_data_loss: bool`
  (default false via `#[serde(default)]`) to `SchemaApplyRequest`.
  Added `Default` derive so test usages can use `..Default::default()`.
- `crates/omnigraph-server/src/lib.rs` — `server_schema_apply` now
  constructs `SchemaApplyOptions { allow_data_loss: request.allow_data_loss }`
  and threads through to `apply_schema_as`.
- `crates/omnigraph-cli/src/main.rs` — remote-URI schema-apply path
  used to bail with "--allow-data-loss not yet supported on remote";
  now forwards the flag into the JSON payload so the CLI behaves
  identically against local and remote URIs.
- `openapi.json` — regenerated; only diff is the new field on
  `SchemaApplyRequest`.

Tests added (8 new):

* `crates/omnigraph-server/tests/server.rs` (+5):
  - `schema_apply_route_soft_drops_property_via_http` — POST schema
    removing nullable property, verify catalog reflects the drop AND
    `snapshot_at_version(pre)` still has `age` in the field list
    (time-travel reachability is the Soft contract).
  - `schema_apply_route_soft_drops_node_type_via_http` — POST schema
    removing `Company` node + cascading `WorksAt` edge.
  - `schema_apply_route_hard_drops_property_with_allow_data_loss` —
    POST with `allow_data_loss: true`, verify plan step reports
    `mode: hard`.
  - `schema_apply_route_keeps_drops_soft_without_flag` — same schema
    without flag, verify `mode: soft`. Pins default semantics against
    accidental Hard promotion.
  - `schema_apply_route_additive_property_preserves_existing_rows` —
    load fixture, POST adding nullable property, verify row count
    preserved (SDK suite covers data preservation on drops + renames;
    additive AddProperty wasn't pinned).
  Plus helpers `schema_without_age` and `schema_without_company`.

* `crates/omnigraph-cli/tests/cli.rs` (+3):
  - `schema_apply_allow_data_loss_flag_promotes_drops_to_hard` — CLI
    `omnigraph schema apply --allow-data-loss --schema X.pg --json`,
    verify plan step has `mode: hard`.
  - `schema_apply_without_allow_data_loss_keeps_soft_drops` — without
    flag, verify Soft.
  - `schema_plan_parity_cli_and_sdk` — same `.pg` source through
    `Omnigraph::plan_schema` (SDK) and `omnigraph schema plan --json`
    (CLI), assert the steps array is byte-identical post-JSON. HTTP
    has no `/schema/plan` endpoint; apply-side parity is implicitly
    covered by the HTTP drop tests + CLI drop tests using identical
    fixtures.

Docs:

- `docs/user/schema-language.md` — new "Destructive drops" section
  documenting Soft vs Hard semantics and that `allow_data_loss` is
  now honored uniformly across CLI / HTTP / SDK.

Verification: every new test passes; full `cargo test --workspace --locked`
green; `scripts/check-agents-md.sh` passes.

Co-authored-by: Claude Opus 4.7 <noreply@anthropic.com>
2026-05-19 01:56:46 +03:00
Andrew Altshuler
e8fec2fa0f
tests: policy chassis e2e gap-fills (MR-722 follow-up) (#106)
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* tests: policy chassis e2e gap-fills (MR-722 follow-up)

Audit after PRs #101-105 surfaced real e2e gaps in the policy chassis
that could let regressions ride through silently. Coverage was strong
at the SDK level (18 chassis tests) and reasonable at HTTP (12+ policy
tests), but the CLI×writer matrix was asymmetric (only `change` tested
end-to-end), the `cli.actor` config-only precedence path was untested,
the `OMNIGRAPH_UNAUTHENTICATED` env-var read path was unexercised,
`serve()`'s startup-refusal propagation was structural-review only,
and engine↔HTTP decision parity was a structural property without a
test pinning it. This commit closes those gaps.

Added (15 new tests, all test-only):

* `policy_engine_chassis.rs` (+2): `load_file_as` allow + deny pair —
  PR #104 added the actor-aware mirror of `load_file` but it was only
  exercised via CLI integration; this is direct-SDK coverage.

* `omnigraph-server/src/lib.rs` mod tests (+2):
  - `unauthenticated_env_var_classification` — consolidated single
    test (process-global env var; running parallel would race) that
    pins truthy values, falsy values, unset, and CLI-flag-overrides-
    env behavior of the `OMNIGRAPH_UNAUTHENTICATED` read path inside
    `load_server_settings`.
  - `serve_refuses_to_start_in_state_1_without_unauthenticated` —
    `#[serial]` integration test. Clears all bearer-token env vars,
    builds a `ServerConfig` with no policy file and no flag, calls
    `serve(config).await`, asserts Err before any side-effecting
    work (Lance dataset open, TcpListener::bind). Guards the
    classifier→serve propagation path so a future refactor that
    drops the call turns red.

* `omnigraph-server/tests/server.rs` (+4): `policy_decision_parity_*`
  — four cases (Change×allowed+denied, BranchMerge×allowed+denied).
  Each case runs the same Cedar decision via both SDK
  (`Omnigraph::with_policy().mutate_as` / `branch_merge_as`) and HTTP
  (`POST /change` / `POST /branches/merge`) and asserts both either
  Allow or Deny. The structural property (both paths call
  `PolicyChecker::check`) is now test-asserted.

* `omnigraph-cli/tests/system_local.rs` (+8): the CLI×writer matrix
  fan-out:
  - `local_cli_load_enforces_engine_layer_policy`
  - `local_cli_ingest_enforces_engine_layer_policy`
  - `local_cli_schema_apply_enforces_engine_layer_policy`
  - `local_cli_branch_create_enforces_engine_layer_policy`
  - `local_cli_branch_delete_enforces_engine_layer_policy`
  - `local_cli_branch_merge_enforces_engine_layer_policy`
  Each: one denied case (`--as act-bruno` against protected main) +
  one allowed case (`--as act-ragnor` via existing/extended admins-*
  rules).
  Plus:
  - `local_cli_actor_from_config_used_when_no_flag` — proves the
    config-only precedence path works.
  - `local_cli_actor_flag_overrides_config_actor` — proves the
    `--as` flag wins over `cli.actor` in the config.
  Adds `local_policy_config_with_actor` helper. Extends
  `POLICY_E2E_YAML` with `admins-branch-ops` (BranchCreate +
  BranchDelete) and `admins-schema-apply` rules so the CLI×writer
  matrix has positive-case rule coverage.

Verification: all new tests pass; full `cargo test --workspace
--locked` is green; `scripts/check-agents-md.sh` passes.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* tests: serialize env-touching server lib tests to fix CI flake

CI flake on PR #106's Test Workspace job: two of the new tests
(`serve_refuses_to_start_in_state_1_without_unauthenticated` and
`unauthenticated_env_var_classification`) raced against
`server_bearer_tokens_from_env_reads_legacy_token_and_token_file`,
which sets `OMNIGRAPH_SERVER_BEARER_TOKEN` via `EnvGuard`.

While `serve_refuses` was mid-execution with its EnvGuard cleared,
the bearer-token test's EnvGuard had `OMNIGRAPH_SERVER_BEARER_TOKEN`
set; `resolve_token_source()` saw it and classified the runtime
state as `DefaultDeny` rather than refusing — so the test panicked
with "Dataset at path X not found" instead of the expected refusal
message. The unauthenticated test had the symmetric failure: its
`OMNIGRAPH_UNAUTHENTICATED="anything"` got overwritten by a peer
`EnvGuard` drop.

Fix: mark every test that uses `EnvGuard` with `#[serial]` so they
serialize against each other (default key). Already on
`serve_refuses_to_start_in_state_1_without_unauthenticated`; added
to `unauthenticated_env_var_classification` and
`server_bearer_tokens_from_env_reads_legacy_token_and_token_file`.
The `parse_bearer_tokens_json_*` tests don't touch env vars and
stay parallel.

Locally green (36 tests pass on my workstation); the parallelism
issue is CI-runner-specific (more aggressive thread interleaving)
but the fix is universal.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 <noreply@anthropic.com>
2026-05-18 22:25:04 +03:00
Andrew Altshuler
a275306a15
policy: CLI policy injection — local writes go through engine enforce (MR-722) (#104)
Closes the CLI side of the policy chassis fan-out. Before this commit,
CLI direct-engine writes bypassed Cedar entirely because the CLI never
called `Omnigraph::with_policy(...)` for non-`policy validate|test|explain`
subcommands. After this commit, every CLI direct-engine writer
(change, load, ingest, branch create/delete/merge, schema apply) opens
the engine via a new `open_local_db_with_policy(uri, &config)` helper
that installs the configured `PolicyEngine` when `policy.file` is set,
and threads the resolved actor through to the `_as` writer methods.

Actor identity resolution:

- New top-level `--as <ACTOR>` global flag on the CLI overrides config.
- New `cli.actor` field in `omnigraph.yaml` provides a default actor.
- Precedence: `--as` > `cli.actor` > None.
- When policy is configured and neither is set, the engine-layer
  footgun guard fires and the write is denied — silent bypass via
  "I forgot the actor" is exactly what the guard prevents.
- Remote HTTP writes ignore both — bearer-token-resolved server-side.

Helpers added in main.rs:

- `open_local_db_with_policy(uri, &config) -> Result<Omnigraph>` —
  opens the DB and installs the PolicyEngine when configured. Without
  policy this is identical to a bare `Omnigraph::open`.
- `resolve_cli_actor(cli_as, &config) -> Option<&str>` — implements
  the flag > config > None precedence.

Engine: added `load_file_as` to the loader as the actor-aware mirror of
`load_file`, so CLI file-path loads flow through the same enforce gate
as in-memory `load_as` calls.

Test rewrite: `local_cli_policy_tooling_is_end_to_end_while_local_writes_stay_unenforced`
was the explicit assertion of the pre-chassis hole. Renamed and split:

- `local_cli_policy_tooling_is_end_to_end` — sanity for the read-only
  policy CLI surfaces (validate/test/explain), unchanged behavior.
- `local_cli_change_enforces_engine_layer_policy` — the new assertion:
  policy installed + no actor → footgun-guard denial; `--as act-bruno`
  on protected main → Cedar denial; `--as act-ragnor` (admins-write
  rule) on main → permit, write committed.

POLICY_E2E_YAML gains an `admins-write` rule so the permit case has
a non-trivial actor to exercise.

docs/user/policy.md updated with `cli.actor` + `--as <ACTOR>` usage.

Co-authored-by: Claude Opus 4.7 <noreply@anthropic.com>
2026-05-18 04:06:21 +03:00
Ragnor Comerford
044ed46019
chore: scrub Linear ticket numbers and review-bot mentions from code comments
OmniGraph is OSS; internal Linear ticket references and code-review-bot
mentions in source-code comments don't help external readers and leak
internal tooling. Replace ticket numbers (MR-XXX) with descriptive
prose, drop linear.app URLs, and remove inline mentions of
Cursor/Bugbot/Cubic/Codex review threads.

Scope is limited to source-code comments (`crates/`). Docs under
`docs/` keep their MR-XXX references — those are part of the
established change-history narrative for in-repo docs and don't
require a Linear account to find context for.

No behavior changes; no public API changes.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-01 22:45:38 +02:00
Ragnor Comerford
35be20cb05
MR-771: demote Run to direct-publish via expected_table_versions CAS
mutate_as and load now write directly to target tables and call the
publisher once at the end with per-table expected versions; the Run
state machine, _graph_runs.lance writers, __run__ staging branches,
and server /runs/* endpoints are removed. Multi-statement mutations
remain atomic at the manifest level via an in-memory MutationStaging
accumulator that gives read-your-writes within a query and a single
publish at the end. Concurrent-writer conflicts surface as
ExpectedVersionMismatch (HTTP 409 manifest_conflict) instead of the
old DivergentUpdate merge shape. Documents one known limitation in
docs/runs.md: a multi-statement mid-query failure where op-N writes
a Lance fragment and op-N+1 fails leaves Lance HEAD ahead of the
manifest until a follow-up introduces per-table Lance branches.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
2026-04-30 08:52:50 +02:00
andrew
1a26e2e654 Rename config targets to graphs 2026-04-14 04:12:14 +03:00
andrew
1bf55fa52d Add query lint and check commands 2026-04-13 00:37:44 +03:00
andrew
92fa3189f7 Add schema apply command and policy support 2026-04-12 04:01:14 +03:00
andrew
4b058b9813 Fix CLI ergonomics and stream export output 2026-04-11 19:01:48 +03:00
andrew
338289656a Initial public Omnigraph repository 2026-04-10 20:49:41 +03:00