Move the 23 flat docs/user/*.md files into topic subdirectories so the
user guide is organized by area (schema, queries, search, branching, cli,
operations, clusters, concepts, reference) instead of a flat list. This is
a pure structural move — whole files relocated, every cross-doc link
recomputed, no prose rewrites or content splits (those follow in Phase 2).
- 19 `git mv`s (install.md, deployment.md stay top-level); history preserved
(renames detected at 92–100% similarity).
- All intra-doc links, AGENTS.md's topic table (52 pointers), and the
docs/dev + docs/releases back-links recomputed via relpath from each
file's new location.
- docs/user/index.md rewritten as a sectioned nav hub.
- Fixed 5 doc-path references in Rust (comments + two user-facing server
settings error strings) to point at the new locations.
Verified: zero broken .md links across tracked docs; check-agents-md.sh
green (with the untracked scratch docs set aside); touched crates build.
Note: the public site (omnigraph-web) imports docs/ via a flat-only script;
its import-docs.mjs needs a subdir-aware update before the next re-sync.
Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
The Run state machine was removed in MR-771 (v0.4.0); `docs/dev/runs.md`
and `crates/omnigraph/tests/runs.rs` have since documented and tested the
direct-publish write path, so the "runs" name was misleading.
- git mv docs/dev/runs.md → docs/dev/writes.md (reframe H1 + intro;
keep MR-771 history note)
- git mv crates/omnigraph/tests/runs.rs → tests/writes.rs (reframe header)
- repoint every runs.md / runs.rs reference across docs, AGENTS.md, and
source comments
- fix four pre-existing broken `docs/runs.md` links (the file never lived
at that path) to `docs/dev/writes.md`
- fix the stale v0.4.0 anchor to the live section
No behavior change: every source edit is a comment. Engine builds and the
renamed test passes 25/25; scripts/check-agents-md.sh passes.
The run-removal cleanup itself (run_registry.rs guard, __run__ prefix) is
deferred to MR-770.
