Content build-out on top of the Phase 1 topic move. No behavior changes.
Splits (existing content relocated, cross-linked):
- queries/index.md → mutations/index.md (insert/update/delete + the
inserts-vs-deletes rule) and search/index.md (the multi-modal search
functions + a hybrid-ranking overview tying nearest/bm25/rrf together).
queries/index.md now covers the read shape and points at both.
- branching/index.md → branching/time-travel.md (snapshots/time travel) and
branching/merge.md (three-way merge + the 7 conflict kinds, verified against
error.rs MergeConflictKind).
New pages (written from the code, user-facing):
- quickstart.md — init → load → query → branch, with verified CLI flags.
- concepts/index.md — what OmniGraph is + the L1/L2 (Lance/OmniGraph) framing.
Expanded operations/audit.md from a 7-line struct dump into a real
actor-tracking page (server token-resolved vs CLI --as chain; reading the
trail; the omnigraph:recovery reserved actor).
Index wiring: docs/user/index.md and AGENTS.md's topic table link every new
page; also normalized AGENTS.md's docs/user link display text to match the
Phase 1 retargeted paths.
Verified: zero broken .md links; check-agents-md.sh green (57 links, 54 docs).
Deferred to Phase 3: de-dev polish (grammar paths, IR internals still in
queries/branching), guides/, and a possible reference/config.md split (the
config schema is already coherent in cli/reference.md).
Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
Move the 23 flat docs/user/*.md files into topic subdirectories so the
user guide is organized by area (schema, queries, search, branching, cli,
operations, clusters, concepts, reference) instead of a flat list. This is
a pure structural move — whole files relocated, every cross-doc link
recomputed, no prose rewrites or content splits (those follow in Phase 2).
- 19 `git mv`s (install.md, deployment.md stay top-level); history preserved
(renames detected at 92–100% similarity).
- All intra-doc links, AGENTS.md's topic table (52 pointers), and the
docs/dev + docs/releases back-links recomputed via relpath from each
file's new location.
- docs/user/index.md rewritten as a sectioned nav hub.
- Fixed 5 doc-path references in Rust (comments + two user-facing server
settings error strings) to point at the new locations.
Verified: zero broken .md links across tracked docs; check-agents-md.sh
green (with the untracked scratch docs set aside); touched crates build.
Note: the public site (omnigraph-web) imports docs/ via a flat-only script;
its import-docs.mjs needs a subdir-aware update before the next re-sync.
Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
