The POST /graphs runtime-create endpoint shipped in PR 7/10 has three
unresolved high-severity bugs:
- flock-on-renamed-inode race: the YAML flock is taken on
omnigraph.yaml itself, then a temp file is renamed over it.
Cross-process writers end up locking different inodes — both
believing they hold exclusive access.
- duplicate-check outside the file lock: precheck runs against
the in-memory registry only; the locked closure does
config.graphs.insert(...) unconditionally. Concurrent same-id
POSTs can persist the loser in YAML while the in-memory registry
keeps the winner — they disagree after restart.
- best_effort_cleanup_init_artifacts deletes _schema.pg /
_schema.ir.json / __schema_state.json on any init failure. An
accidental re-init against an existing graph's URI destroys its
schema; subsequent open() fails at read_text(_schema.pg).
The correct fix is a Lance-style cluster catalog (reserve → init →
publish with recovery sidecars), parallel to the engine's existing
__manifest discipline. That work is out of scope for v0.7.0.
For now, disable runtime add/remove from the network and CLI surface.
Operators add graphs by editing omnigraph.yaml and restarting. The
GET /graphs read-only enumeration stays.
Removed:
- POST /graphs handler + router fragment + utoipa registration
- 13 post_graphs_* server tests + 3 composite POST tests +
multi_mode_app_with_real_config / post_graph helpers
- CLI omnigraph graphs create subcommand + its handler + cli.rs tests
- system_remote.rs combined list+create test trimmed to list-only
- YAML rewrite infra: rewrite_atomic[_with_modify], RewriteAtomicError,
staging_path, hash_config_file, AppState::config_hash field +
threading through new_multi and open_multi_graph_state
- fs2 dependency (verified absent from cargo tree)
- sha2/fs2 imports in config.rs (only the rewrite path used them)
- Cedar PolicyAction::GraphCreate variant + "graph_create" match arms
+ action def in Cedar schema + graph_create_action_authorizes_against_server_resource test
- GraphCreateRequest / GraphCreateResponse / GraphSchemaSpec /
GraphPolicySpec API types (only the POST handler / CLI imported them)
Kept:
- GET /graphs (read-only enumeration) and graph_list Cedar action
- omnigraph graphs list CLI subcommand
- All multi-graph startup, mode inference, cluster routes,
per-graph + server-level Cedar policies
- server_settings_drive_multi_graph_startup_end_to_end (the test
that covers operator-authored YAML + restart — the path that
survives)
- best_effort_cleanup_init_artifacts and the three init failpoints
(still reachable from CLI `omnigraph init`; preflight fix deferred
as a follow-up)
- GraphRegistry::insert and its concurrency tests — production
callers gone, but the method is the natural seam for the future
cluster-catalog work
Also fixed (transcript issue 4):
- ALWAYS_FLAT_PATHS now includes /graphs so multi-mode OpenAPI
advertises the management route correctly (was previously rewritten
to /graphs/{graph_id}/graphs)
- multi_mode_openapi_keeps_healthz_flat → renamed to
multi_mode_openapi_keeps_management_paths_flat, asserts both
/healthz and /graphs stay flat
- multi_mode_openapi_prefixes_operation_ids_with_cluster skips
/graphs in addition to /healthz
Doc fixes:
- docs/user/cli.md: graphs list example was --target http://...,
but --target is a config-graph-name lookup; corrected to --uri.
Removed the graphs create example.
- docs/user/server.md: dropped POST /graphs row, "omnigraph.yaml
ownership", and "POST /graphs body shape" sections. Added a
paragraph stating runtime add/remove is not exposed in v0.7.0.
- docs/user/policy.md: dropped graph_create action; reworded the
"Configuration" line to clarify that server-scoped rules (graph_list)
take neither branch_scope nor target_branch_scope.
- docs/releases/v0.7.0.md: rewrote release narrative — multi-graph
mode ships; runtime add/remove deferred.
- AGENTS.md: HTTP server bullet and capability matrix row updated to
reflect read-only GET /graphs and the operator-edit workflow.
- openapi.json regenerated; /graphs has only .get, no .post.
Diff: 17 files, +123 −1525 LOC.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
PR 9 — the final integration PR for MR-668 multi-graph server work.
Closes the v0.7.0 release.
Composite lifecycle tests (closes gaps flagged in PR 7's coverage
review):
- `multi_graph_lifecycle_post_query_restart_persistence` — POST a
graph, query it via cluster route, reload the config from disk
and confirm `load_server_settings` sees the rewritten YAML.
Validates the "restart resolves orphans" failure-mode story.
- `per_graph_policy_enforced_on_post_created_graph` — POST a graph
with a per-graph policy attached, then send authenticated read
and change requests. Per-graph Cedar enforcement fires correctly
on a POST-created graph (engine-layer policy reinstalled via
`Omnigraph::with_policy` inside the create flow).
- `concurrent_post_graphs_distinct_ids_all_succeed` — 4 concurrent
POSTs with distinct graph_ids all return 201. Caught a real
race in `rewrite_atomic` (see below).
Race fix — `rewrite_atomic_with_modify`:
The first composite test surfaced a real bug. The old
`rewrite_atomic(path, new_config, expected_hash)` captured the
baseline hash OUTSIDE the flock, then called rewrite_atomic which
re-acquired it inside. Under concurrent writers:
- POST A: captures baseline H0, calls rewrite_atomic.
- POST B: captures baseline H0 too (before A's update lands).
- A: acquires flock, on-disk == H0, writes H1, releases.
- A: updates baseline H0 → H1.
- B: tries to acquire flock — waits.
- B: acquires flock. On-disk is now H1. Expected (captured
before A finished) is H0. MISMATCH → spurious Drift error.
Worse: even if the timing happens to align, B's `updated` config
was constructed from BYTES read before the flock. B writes a config
that doesn't include A's new graph — silent data loss.
The fix: new `config::rewrite_atomic_with_modify(path, baseline,
modify)` takes a closure. Inside the flock + baseline mutex:
1. Read on-disk bytes, hash, compare to baseline.
2. Parse on-disk YAML.
3. Call `modify(parsed)` to produce the new config — receives
fresh on-disk state, returns the modification.
4. Serialize + write + fsync + rename + update baseline.
Everything is read-modify-write under the same critical section.
Concurrent writers serialize cleanly. Test confirmed this is no
longer a race.
The old `rewrite_atomic(path, new_config, expected_hash)` API stays
for tests that don't need the read-modify-write shape; the POST
handler switches to the new shape.
Version bump v0.6.0 → v0.7.0:
- All 5 `crates/*/Cargo.toml` (compiler, engine, policy, cli, server)
plus their inter-crate `path` dep version constraints.
- `Cargo.lock` regenerated by `cargo build --workspace`.
- `AGENTS.md` "Version surveyed" line, capability matrix HTTP-server
row updated to mention multi-graph + cluster routes + atomic YAML
rewrite.
- `openapi.json` regenerated.
Docs:
- `docs/releases/v0.7.0.md` (new) — release notes with breaking
changes, new features, deferred items (DELETE, `delete_prefix`,
actor forwarding), and the single→multi migration recipe.
- `docs/user/server.md` — substantial section additions for the
two modes, mode inference, cluster endpoint table, management
endpoints, `omnigraph.yaml` ownership contract, `POST /graphs`
body shape + status codes.
- `docs/user/cli.md` — `omnigraph graphs list/create` section,
deferred-DELETE note.
- `docs/user/policy.md` — server-scoped Cedar actions
(`graph_create`, `graph_list`), per-graph vs server-level policy
composition, example server-level policy.
Workspace test pass: 573 tests green across all crates. Zero
failures. MR-731 spoof regression still pinned and passing across
the entire 10-PR series.
This commit closes MR-668. v0.7.0 is ready for tagging.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* gitignore: exclude docs/internal/ from publication
Mirrors the existing "Local-only working files (not for the public
repo)" pattern. Working notes filed under docs/internal/ stay on the
contributor's machine instead of cluttering the published doc tree
or tripping the AGENTS.md / docs-index cross-link check
(scripts/check-agents-md.sh enumerates every docs/*.md and requires
each one to be linked from an audience index — internal notes don't
have an audience index by definition).
Incidental to the v0.5.0 release; lands separately from the version
bump commits.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* ci: skip docs/internal/ in agents-md cross-link check
Matches the .gitignore exclusion. Mirrors the existing 'docs/releases/'
exclusion pattern: notes under docs/internal/ aren't part of the
published doc tree and don't need to be linked from an audience index.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
* release: v0.5.0 — Lance 6 substrate, Cedar policy engine, schema-lint v1
Bumps the workspace from 0.4.2 to 0.5.0. Release notes at
docs/releases/v0.5.0.md.
Three user-visible pillars motivate the minor bump:
1. Lance 6.0.1 substrate (DataFusion 52→53, Arrow 57→58)
2. Engine-wide Cedar policy enforcement on every _as writer; server
defaults to deny-all; signed-token-claim-only actor identity
3. Schema-lint v1 chassis: OG-XXX-NNN codes, soft drops, and
`--allow-data-loss` (Hard mode) for destructive migrations
Plus structured DataFusion Expr filter pushdown (unblocks
CompOp::Contains via array_has), HTTP allow_data_loss parity, inline
.gq sources on CLI/HTTP, optional CORS layer, and bug fixes
(merge-insert dup-rowid, branch-merge coordinator restore on error,
blob columns in branch merge).
Sites bumped:
- 5 crate [package].version lines (omnigraph, omnigraph-cli,
omnigraph-compiler, omnigraph-policy, omnigraph-server)
- 10 internal path-dep `version = "..."` constraints across the
four manifests that depend on sister crates (engine, server, cli,
plus engine's dev-dep on the compiler)
- Cargo.lock (regenerated via cargo update --workspace)
- AGENTS.md "Version surveyed:"
- openapi.json `info.version` (regenerated via
OMNIGRAPH_UPDATE_OPENAPI=1 cargo test -p omnigraph-server --test
openapi)
Verification:
- cargo test --workspace --locked: 907/907 green
- cargo test -p omnigraph-engine --test failpoints --features
failpoints: 19/19 green
- cargo test -p omnigraph-engine --test lance_surface_guards: 3/3
- scripts/check-agents-md.sh: clean
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
---------
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Five fixes from PR #68 review (Cursor Bugbot + Codex + Cubic):
* **scan_with_pending gains merge-shadow semantics** (Codex P1, Cubic P1#1):
new `key_column: Option<&str>` parameter. When set, committed rows
whose key value appears in any pending batch are excluded from the
scan — making `scan_with_pending` correctly merge-semantic for chained
updates instead of naively unioning. execute_update calls with
Some("id"). Without this, a chained `update where age > 30` could
match a row whose pending value already moved out of range.
* **Multi-delete on same table no longer trips ExpectedVersionMismatch**
(Cursor Bugbot HIGH): open_table_for_mutation routes through
reopen_for_mutation when staging.inline_committed has the table,
using the post-inline-commit Lance version captured at record_inline
time. The legacy open_for_mutation_on_branch fence (Lance HEAD ==
manifest pinned) is correct cross-writer but wrong intra-query when
deletes have already advanced HEAD on this table. Branch goes away
when Lance ships two-phase delete (lance-format/lance#6658).
* **Cardinality validation consolidated** (Cursor LOW + Codex P2 +
Cubic P1#2 + Cubic P2): new exec/staging::count_src_per_edge +
enforce_cardinality_bounds shared by mutation and loader paths.
Restores the missing min-cardinality check on the engine path.
Loader Merge mode passes Some("id") to dedupe edges being updated
by id (not double-count committed + pending). Loader Append mode
and engine path pass None (ULID-generated ids never collide).
* **Dead count_rows_with_pending removed** (Cursor LOW): never called.
* **Misleading concat-helper comment fixed** (Cubic P3): claimed
schema normalization the helper doesn't implement. Updated to match
reality.
* **Documentation honesty** (Cubic P1#3): MR-794 narrows but doesn't
eliminate the "Lance HEAD ahead of __manifest" drift class. Drift is
unreachable for op-execution failures (the partial_failure test pins
this), but a residual remains at the finalize→publisher boundary
because Lance has no multi-dataset commit primitive: per-table
commit_staged calls run sequentially before manifest commit. Updated
docs/runs.md, docs/invariants.md §VI.25, docs/releases/v0.4.1.md to
scope the claim precisely.
* **Failpoint test pinning the residual**: new
mutation.post_finalize_pre_publisher failpoint + two tests in
tests/failpoints.rs that confirm the documented residual behavior.
Catches future regressions that widen the residual.
Test additions on tests/runs.rs:
* chained_updates_with_overlapping_predicate_respects_intermediate_value
* multi_statement_delete_on_same_node_table
* cascade_delete_node_then_explicit_delete_edge_on_same_table
* mutation_insert_edge_enforces_min_cardinality
* load_merge_mode_dedupes_edge_for_cardinality_count
113/113 engine integration tests pass (runs + end_to_end + consistency
+ staged_writes + validators). Failpoints feature build runs in CI.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Refresh user-facing and agent-facing docs for the staged-write rewire
and clean up stale Run-state-machine references that survived MR-771.
MR-794-specific updates:
* docs/runs.md — remove "Known limitation: mid-query partial failure"
section; document the in-memory accumulator + D₂ rule + the
LoadMode::Overwrite residual.
* docs/invariants.md §VI.25 — flip from aspirational/open to
upheld for inserts/updates. Within-query read-your-writes is now
load-bearing for the publisher CAS contract.
* docs/architecture.md — add "Mutation atomicity — in-memory
accumulator (MR-794)" subsection with per-op flow; refresh the
engine + state diagrams to drop RunRegistry and add MutationStaging.
* docs/execution.md — rewrite the mutation flow sequence diagram
for the staged-write path; updated the LoadMode table to call
out per-mode commit semantics; rewrote load vs ingest.
* docs/query-language.md — document the D₂ parse-time rule.
* docs/errors.md — add the D₂ BadRequest rejection path.
* docs/testing.md — extend the runs.rs row to cover the new MR-794
contract tests; add the staged_writes.rs row.
* docs/releases/v0.4.1.md (new) — release note covering the rewire,
test additions, residuals, and files changed.
* AGENTS.md (CLAUDE.md symlink) — update the atomic-per-query
description and the L2 capability matrix row.
Stale-reference cleanup (MR-771 leftovers):
* docs/storage.md — drop live _graph_runs.lance / _graph_run_actors.lance
from the layout diagram and prose; mark legacy.
* docs/branches-commits.md — move __run__<id> to a legacy note;
remove publish_run from the publish-trigger list.
* docs/audit.md — refresh _as API list (drop begin_run_as / publish_run_as);
legacy RunRecord.actor_id moved to a historical note.
* docs/constants.md — mark run registry / branch-prefix rows as legacy.
* docs/cli.md — replace the legacy omnigraph run * quickstart block
with omnigraph commit list/show.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
mutate_as and load now write directly to target tables and call the
publisher once at the end with per-table expected versions; the Run
state machine, _graph_runs.lance writers, __run__ staging branches,
and server /runs/* endpoints are removed. Multi-statement mutations
remain atomic at the manifest level via an in-memory MutationStaging
accumulator that gives read-your-writes within a query and a single
publish at the end. Concurrent-writer conflicts surface as
ExpectedVersionMismatch (HTTP 409 manifest_conflict) instead of the
old DivergentUpdate merge shape. Documents one known limitation in
docs/runs.md: a multi-statement mid-query failure where op-N writes
a Lance fragment and op-N+1 fails leaves Lance HEAD ahead of the
manifest until a follow-up introduces per-table Lance branches.
Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
Splits the 990-line AGENTS.md into a 184-line map (architecture,
where-to-find index, always-on invariants, capability matrix,
maintenance contract) plus 18 new docs/*.md files holding the deep
content per topic (storage, schema and query languages, indexes,
embeddings, branches/commits, runs, merge, changes, execution, policy,
server, CLI reference, audit, errors, CI, constants, v0.3.1 notes).
Adds scripts/check-agents-md.sh and a check_agents_md CI job that
verifies every docs/ link in AGENTS.md resolves and every doc in the
canonical set is linked. CLAUDE.md remains a symlink to AGENTS.md.
Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
