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docs(cli): the two config surfaces + the operator file reference
cli-reference.md gains the config-surfaces table (cluster / operator / flags-env, with omnigraph.yaml marked as the legacy combined file per RFC-008) and the operator config.yaml reference; audit.md documents the unified actor chain. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
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- `Omnigraph::audit_actor_id: Option<String>` is the actor in effect.
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- `_as` variants of every write API let callers override the actor: `mutate_as`, `load_as`, `branch_merge_as`, `apply_schema_as`, etc.
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- Actor IDs are persisted on `GraphCommit.actor_id` with split storage in `_graph_commit_actors.lance` (the commit graph is split into `_graph_commits.lance` for the linkage and `_graph_commit_actors.lance` for the actor map).
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- HTTP server uses the bearer-token actor automatically; CLI uses the local user / explicit env (no implicit actor).
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- HTTP server uses the bearer-token actor automatically. The CLI resolves one actor chain everywhere: `--as` > legacy `cli.actor` in `omnigraph.yaml` > `operator.actor` in `~/.omnigraph/config.yaml` > none (RFC-007).
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- Pre-v0.4.0 graphs also stored actor IDs on `RunRecord.actor_id` in `_graph_runs.lance` / `_graph_run_actors.lance`. The Run state machine was removed in MR-771; those files are inert post-v0.4.0. The v2→v3 manifest migration sweeps any stale `__run__*` branches on first write-open (MR-770); the inert dataset bytes remain until a `delete_prefix` primitive lands.
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