recovery: rename composite test, strip ticket references, address review

Three bundled changes:

1. Rename `tests/agent_lifecycle.rs` -> `tests/composite_flow.rs` (and
   the test function). OmniGraph is consumed by both humans and agents
   - naming the test after one audience misframes the library.

2. Strip Linear ticket IDs, PR numbers, bot reviewer names, and
   review-round labels from source, tests, and docs added by this
   branch. Internal traceability belongs in commit messages and PR
   descriptions, not in checked-in artifacts. Upstream
   lance-format/lance issue refs and pre-existing MR-XXX refs in docs
   not touched by this branch are left alone.

3. Two outstanding review findings addressed:
   - `needs_index_work_node` / `needs_index_work_edge`: propagate
     `count_rows` errors instead of `unwrap_or(0)`. Silently treating
     transient I/O failures as "0 rows" risked skipping a table from
     the recovery sidecar pin set that was actually about to be
     modified.
   - `recovery_multi_sidecar_requires_fresh_snapshot_for_correctness`:
     strengthen the assertion to fail when sidecar B classifies under
     a stale snapshot. The new assertion checks post-recovery Lance
     HEAD == v3 (no `Dataset::restore` ran). The previous "sidecar
     deleted + audit rows present" pair passed in both the bug and
     fix paths because both delete the sidecar and write an audit
     row; the differentiator is the post-recovery HEAD. Strengthening
     the assertion exposed an additional nuance: in this overlapping-
     sidecar scenario sidecar B's audit kind is RolledBack (no-op)
     rather than RolledForward, since sidecar A's roll-forward
     publishes Lance HEAD as the new manifest pin (absorbing B's
     work). The docstring now explains why this is correct given
     current `roll_forward_all` semantics.

All workspace tests pass with --features failpoints.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
This commit is contained in:
Ragnor Comerford 2026-05-03 13:56:36 +02:00
parent 78cc548846
commit 05e52f2ee0
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22 changed files with 430 additions and 374 deletions

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@ -56,7 +56,7 @@ Filtered from `branch_list()` but visible to internals:
- `__schema_apply_lock__` — serializes schema migrations.
- `__run__<run-id>` — legacy from the pre-v0.4.0 Run state machine (removed in MR-771). The branch-name guard predicate `is_internal_run_branch` is kept as defense-in-depth so users cannot create a branch matching the legacy prefix; the filter will be removed once production legacy branches are swept (MR-770).
## L2 — Recovery audit trail (MR-847)
## L2 — Recovery audit trail
The four migrated writers (`MutationStaging::finalize`, `schema_apply`, `branch_merge`, `ensure_indices`) protect their multi-table commits with a sidecar at `__recovery/{ulid}.json` written before Phase B and deleted after Phase C. The next `Omnigraph::open` (gated on `OpenMode::ReadWrite`) runs the recovery sweep in `crates/omnigraph/src/db/manifest/recovery.rs`: classify per-table state, decide all-or-nothing per sidecar, roll forward / back, record an audit row.

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@ -105,13 +105,13 @@ These are user-visible commitments. They state what the engine guarantees and wh
Specific defaults (timeout values, memory caps, TTL windows) are *configuration*, not invariants — see [docs/constants.md](constants.md) and per-deployment configuration. The invariant is that bounds and contracts exist, not their numerical values.
23. **Atomicity is per-query.** Every `.gq` query is atomic — multi-statement mutations are all-or-nothing via the substrate's atomic-commit primitive. No cross-query `BEGIN`/`COMMIT`; branches and merges fill that role for agent workflows.
*Status: upheld at the writer-trait surface AND across process boundaries after MR-847 — the sealed `TableStorage` trait routes inserts / updates / scalar-index builds / merge_insert / overwrite through `stage_*` + `commit_staged` (Phase A is drift-free), and the open-time recovery sweep in `db/manifest/recovery.rs` (sidecars at `__recovery/{ulid}.json` written by `MutationStaging::finalize`, `schema_apply`, `branch_merge`, `ensure_indices`) closes the per-table commit_staged → manifest publish residual on the next `Omnigraph::open`. The "Lance HEAD ahead of `__manifest`" drift class is unreachable for op-execution failures and recoverable across process boundaries for finalize→publisher failures. Continuous in-process recovery (no restart required between Phase B failure and recovery) arrives with MR-856 (background recovery reconciler). Two writer paths still inline-commit pending upstream Lance work: `delete_where` (lance-format/lance#6658) and `create_vector_index` (lance-format/lance#6666).*
*Status: upheld at the writer-trait surface AND across process boundaries — the sealed `TableStorage` trait routes inserts / updates / scalar-index builds / merge_insert / overwrite through `stage_*` + `commit_staged` (Phase A is drift-free), and the open-time recovery sweep in `db/manifest/recovery.rs` (sidecars at `__recovery/{ulid}.json` written by `MutationStaging::finalize`, `schema_apply`, `branch_merge`, `ensure_indices`) closes the per-table commit_staged → manifest publish residual on the next `Omnigraph::open`. The "Lance HEAD ahead of `__manifest`" drift class is unreachable for op-execution failures and recoverable across process boundaries for finalize→publisher failures. Continuous in-process recovery (no restart required between Phase B failure and recovery) is the goal of a future background reconciler. Two writer paths still inline-commit pending upstream Lance work: `delete_where` (lance-format/lance#6658) and `create_vector_index` (lance-format/lance#6666).*
24. **Schema integrity is strict at commit.** Type validation, required-field presence (auto-filled from `@default` if declared), uniqueness across batches and versions, and referential integrity — all enforced before commit succeeds. Per-write softening flags are opt-in, never default.
*Status: aspirational — referential integrity at scale requires SIP-backed cross-table validation; not yet implemented. Cross-batch / cross-version uniqueness tracked in MR-714.*
25. **Isolation: per-query snapshot; read-your-writes within and across queries in a session.** Each query reads from one consistent manifest version. Within a multi-statement mutation, the read subplan inside each write operator sees the writes from earlier statements. Across queries in a session, reads always resolve the latest manifest version — no reader pinning to older snapshots.
*Status: upheld for inserts/updates after MR-794 step 2+`MutationStaging`'s in-memory accumulator + `TableStore::scan_with_pending` (DataFusion `MemTable` union with the committed Lance scan, with merge-shadow semantics for chained updates) implements read-your-writes within a multi-statement mutation. Delete-touching mutations are limited to delete-only by parse-time D₂; closing the within-query RYW gap for deletes requires Lance's two-phase delete API (tracked: MR-793 / Lance-upstream lance-format/lance#6658). The "Lance HEAD ahead of `__manifest`" drift class is unreachable for op-execution failures (the partial-failure test pins this), and the narrower finalize→publisher residual is closed across one open cycle by the MR-847 recovery sweep — see [docs/runs.md](runs.md) "Open-time recovery sweep".*
*Status: upheld for inserts/updates — `MutationStaging`'s in-memory accumulator + `TableStore::scan_with_pending` (DataFusion `MemTable` union with the committed Lance scan, with merge-shadow semantics for chained updates) implements read-your-writes within a multi-statement mutation. Delete-touching mutations are limited to delete-only by parse-time D₂; closing the within-query RYW gap for deletes requires Lance's two-phase delete API (Lance-upstream lance-format/lance#6658). The "Lance HEAD ahead of `__manifest`" drift class is unreachable for op-execution failures (the partial-failure test pins this), and the narrower finalize→publisher residual is closed across one open cycle by the open-time recovery sweep — see [docs/runs.md](runs.md) "Open-time recovery sweep".*
26. **Durability before acknowledgement.** Commit returns only after the substrate has confirmed durable persistence. No "fast" or "fire-and-forget" durability levels.

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@ -16,7 +16,7 @@
- `CleanupPolicyOptions { keep_versions: Option<u32>, older_than: Option<Duration> }` — at least one is required.
- Returns `[TableCleanupStats { table_key, bytes_removed, old_versions_removed }]`.
- CLI guards with `--confirm`; without it, prints a preview line.
- **MR-847 recovery floor:** `--keep < 3` may garbage-collect Lance versions that the open-time recovery sweep needs as a rollback target (the sweep restores to the manifest-pinned `expected_version`, which is HEAD-1 in the typical Phase B → Phase C drift case). Default `--keep 10` is safe.
- **Recovery floor:** `--keep < 3` may garbage-collect Lance versions that the open-time recovery sweep needs as a rollback target (the sweep restores to the manifest-pinned `expected_version`, which is HEAD-1 in the typical Phase B → Phase C drift case). Default `--keep 10` is safe.
## Tombstones

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@ -130,7 +130,7 @@ will replace it. Operator-driven (rare in agent workloads); document
permanently until Lance exposes `Operation::Overwrite { fragments }` as
a two-phase op.
### Open-time recovery sweep (MR-847)
### Open-time recovery sweep
The staged-write rewire eliminates one drift class **by construction at
the writer layer**: an op that fails before pushing to the in-memory
@ -140,7 +140,7 @@ the case the `partial_failure_leaves_target_queryable_and_unblocks_next_mutation
test pins.
A second, narrower drift class — the **finalize → publisher window**
is closed across one open cycle by the MR-847 recovery sweep:
is closed across one open cycle by the open-time recovery sweep:
`MutationStaging::finalize` runs `stage_*` + `commit_staged` per touched
table sequentially, then the publisher commits the manifest. Lance has
@ -197,8 +197,8 @@ contention exceeding `PUBLISHER_RETRY_BUDGET = 5` retries.
`Omnigraph::open` (typically a server restart), subsequent writers on
the affected tables surface
`ManifestConflictDetails::ExpectedVersionMismatch`. Continuous
in-process recovery (no restart required) arrives with MR-856
(background recovery reconciler).
in-process recovery (no restart required) is the goal of a future
background reconciler.
The publisher-CAS contract is unchanged: a *concurrent writer* that
advances any of our touched tables between snapshot capture and

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@ -63,7 +63,7 @@ flowchart TB
nodes["nodes/{fnv1a64-hex}/<br/>one dataset per node type"]:::l2
edges["edges/{fnv1a64-hex}/<br/>one dataset per edge type"]:::l2
cgraph["_graph_commits.lance/<br/>_graph_commit_actors.lance/<br/>_graph_commit_recoveries.lance/"]:::l2
recovery["__recovery/{ulid}.json<br/>MR-847 sidecars (transient)"]:::l2
recovery["__recovery/{ulid}.json<br/>recovery sidecars (transient)"]:::l2
refs["_refs/branches/{name}.json<br/>graph-level branches"]:::l2
repo --> manifest
@ -92,8 +92,8 @@ flowchart TB
- **`__manifest/`** is a Lance dataset whose rows describe which sub-table version is published at which graph-branch. Reading a snapshot starts here.
- **`nodes/`** and **`edges/`** are sibling directories holding one Lance dataset per declared type. Names are `fnv1a64-hex` of the type name to keep paths fixed-length and case-safe.
- **`_graph_commits.lance`** is an L2 dataset that records the graph-level commit DAG, with a paired `_graph_commit_actors.lance` for the actor map. (Pre-v0.4.0 repos also have inert `_graph_runs.lance` / `_graph_run_actors.lance` from the removed Run state machine; MR-770 sweeps these in production.)
- **`_graph_commit_recoveries.lance`** (MR-847) — one row per recovery sweep action. Joined to `_graph_commits.lance` by `graph_commit_id`; the linked commit row carries `actor_id=omnigraph:recovery`. Operators correlate recoveries with the original mutations they rolled forward / back via this join. See `crates/omnigraph/src/db/recovery_audit.rs`.
- **`__recovery/{ulid}.json`** (MR-847) — transient sidecar files written by the four migrated writers (`MutationStaging::finalize`, `schema_apply`, `branch_merge`, `ensure_indices`) before Phase B begins, deleted after Phase C succeeds. A sidecar persisting after process exit means the writer crashed in the Phase B → Phase C window; the next `Omnigraph::open` recovery sweep processes it. Steady-state directory is empty. See `crates/omnigraph/src/db/manifest/recovery.rs`.
- **`_graph_commit_recoveries.lance`** — one row per recovery sweep action. Joined to `_graph_commits.lance` by `graph_commit_id`; the linked commit row carries `actor_id=omnigraph:recovery`. Operators correlate recoveries with the original mutations they rolled forward / back via this join. See `crates/omnigraph/src/db/recovery_audit.rs`.
- **`__recovery/{ulid}.json`** — transient sidecar files written by the four migrated writers (`MutationStaging::finalize`, `schema_apply`, `branch_merge`, `ensure_indices`) before Phase B begins, deleted after Phase C succeeds. A sidecar persisting after process exit means the writer crashed in the Phase B → Phase C window; the next `Omnigraph::open` recovery sweep processes it. Steady-state directory is empty. See `crates/omnigraph/src/db/manifest/recovery.rs`.
- **`_refs/branches/{name}.json`** is graph-level branch metadata — pointers from a branch name to the manifest version it heads.
- **Inside each Lance dataset** (orange): the standard Lance directory layout. `_versions/{n}.manifest` records every commit; `data/` holds the actual Arrow fragments; `_indices/{uuid}/` holds index segments with their own `fragment_bitmap` for partial coverage; `_refs/` holds Lance-native per-dataset branches and tags.

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@ -32,8 +32,8 @@ The engine's `tests/` is the principal coverage surface; most graph-shaped behav
| `export.rs` | NDJSON streaming export filters |
| `s3_storage.rs` | S3-backed repo (skipped unless `OMNIGRAPH_S3_TEST_BUCKET` is set) |
| `lance_version_columns.rs` | Per-row `_row_last_updated_at_version` behavior |
| `failpoints.rs` | Failure-injection coverage (gated on `failpoints` feature). Includes the four MR-847 per-writer Phase B → recovery integration tests (`recovery_rolls_forward_after_finalize_publisher_failure`, `schema_apply_phase_b_failure_recovered_on_next_open`, `branch_merge_phase_b_failure_recovered_on_next_open`, `ensure_indices_phase_b_failure_recovered_on_next_open`). |
| `recovery.rs` | MR-847 open-time recovery sweep — sidecar I/O, classifier dispatch (NoMovement / RolledPastExpected / UnexpectedAtP1 / UnexpectedMultistep / InvariantViolation), all-or-nothing decision, roll-forward via `ManifestBatchPublisher::publish`, roll-back via `Dataset::restore`, audit row in `_graph_commit_recoveries.lance`, `OpenMode::ReadOnly` skip path |
| `failpoints.rs` | Failure-injection coverage (gated on `failpoints` feature). Includes the four per-writer Phase B → recovery integration tests (`recovery_rolls_forward_after_finalize_publisher_failure`, `schema_apply_phase_b_failure_recovered_on_next_open`, `branch_merge_phase_b_failure_recovered_on_next_open`, `ensure_indices_phase_b_failure_recovered_on_next_open`). |
| `recovery.rs` | Open-time recovery sweep — sidecar I/O, classifier dispatch (NoMovement / RolledPastExpected / UnexpectedAtP1 / UnexpectedMultistep / InvariantViolation), all-or-nothing decision, roll-forward via `ManifestBatchPublisher::publish`, roll-back via `Dataset::restore`, audit row in `_graph_commit_recoveries.lance`, `OpenMode::ReadOnly` skip path |
## Fixtures