omnigraph/docs/cli.md

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# CLI Guide
## Core Repo Flow
```bash
omnigraph init --schema ./schema.pg ./repo.omni
omnigraph load --data ./data.jsonl --mode overwrite ./repo.omni
omnigraph snapshot ./repo.omni --branch main --json
omnigraph read --uri ./repo.omni --query ./queries.gq --name get_person --params '{"name":"Alice"}'
omnigraph change --uri ./repo.omni --query ./queries.gq --name insert_person --params '{"name":"Mina","age":28}'
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```
## Branching And Reviewable Data Flows
```bash
omnigraph branch create --uri ./repo.omni --from main feature-x
omnigraph branch list --uri ./repo.omni
omnigraph branch merge --uri ./repo.omni feature-x --into main
omnigraph ingest --data ./batch.jsonl --branch review/import-2026-04-09 ./repo.omni
omnigraph export ./repo.omni --branch main --type Person > people.jsonl
omnigraph commit list ./repo.omni --branch main --json
omnigraph commit show --uri ./repo.omni <commit-id> --json
```
## Remote Server Mode
Serve a repo:
```bash
omnigraph-server ./repo.omni --bind 127.0.0.1:8080
```
Read through the HTTP API:
```bash
omnigraph read \
--target http://127.0.0.1:8080 \
--query ./queries.gq \
--name get_person \
--params '{"name":"Alice"}'
```
If the server requires auth, set `OMNIGRAPH_SERVER_BEARER_TOKEN` on the server
and configure the matching `bearer_token_env` in `omnigraph.yaml`.
## Runs, Policy, And Diagnostics
```bash
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omnigraph query lint --query ./queries.gq --schema ./schema.pg --json
omnigraph query check --query ./queries.gq ./repo.omni --json
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omnigraph schema plan --schema ./next.pg ./repo.omni --json
omnigraph schema apply --schema ./next.pg ./repo.omni --json
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omnigraph policy validate --config ./omnigraph.yaml
omnigraph policy test --config ./omnigraph.yaml
omnigraph policy explain --config ./omnigraph.yaml --actor act-alice --action read --branch main
MR-794 step 2: docs — runs/invariants/architecture/execution + cleanup Refresh user-facing and agent-facing docs for the staged-write rewire and clean up stale Run-state-machine references that survived MR-771. MR-794-specific updates: * docs/runs.md — remove "Known limitation: mid-query partial failure" section; document the in-memory accumulator + D₂ rule + the LoadMode::Overwrite residual. * docs/invariants.md §VI.25 — flip from aspirational/open to upheld for inserts/updates. Within-query read-your-writes is now load-bearing for the publisher CAS contract. * docs/architecture.md — add "Mutation atomicity — in-memory accumulator (MR-794)" subsection with per-op flow; refresh the engine + state diagrams to drop RunRegistry and add MutationStaging. * docs/execution.md — rewrite the mutation flow sequence diagram for the staged-write path; updated the LoadMode table to call out per-mode commit semantics; rewrote load vs ingest. * docs/query-language.md — document the D₂ parse-time rule. * docs/errors.md — add the D₂ BadRequest rejection path. * docs/testing.md — extend the runs.rs row to cover the new MR-794 contract tests; add the staged_writes.rs row. * docs/releases/v0.4.1.md (new) — release note covering the rewire, test additions, residuals, and files changed. * AGENTS.md (CLAUDE.md symlink) — update the atomic-per-query description and the L2 capability matrix row. Stale-reference cleanup (MR-771 leftovers): * docs/storage.md — drop live _graph_runs.lance / _graph_run_actors.lance from the layout diagram and prose; mark legacy. * docs/branches-commits.md — move __run__<id> to a legacy note; remove publish_run from the publish-trigger list. * docs/audit.md — refresh _as API list (drop begin_run_as / publish_run_as); legacy RunRecord.actor_id moved to a historical note. * docs/constants.md — mark run registry / branch-prefix rows as legacy. * docs/cli.md — replace the legacy omnigraph run * quickstart block with omnigraph commit list/show. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
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omnigraph commit list ./repo.omni --json
omnigraph commit show --uri ./repo.omni <commit-id> --json
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```
MR-794 step 2: docs — runs/invariants/architecture/execution + cleanup Refresh user-facing and agent-facing docs for the staged-write rewire and clean up stale Run-state-machine references that survived MR-771. MR-794-specific updates: * docs/runs.md — remove "Known limitation: mid-query partial failure" section; document the in-memory accumulator + D₂ rule + the LoadMode::Overwrite residual. * docs/invariants.md §VI.25 — flip from aspirational/open to upheld for inserts/updates. Within-query read-your-writes is now load-bearing for the publisher CAS contract. * docs/architecture.md — add "Mutation atomicity — in-memory accumulator (MR-794)" subsection with per-op flow; refresh the engine + state diagrams to drop RunRegistry and add MutationStaging. * docs/execution.md — rewrite the mutation flow sequence diagram for the staged-write path; updated the LoadMode table to call out per-mode commit semantics; rewrote load vs ingest. * docs/query-language.md — document the D₂ parse-time rule. * docs/errors.md — add the D₂ BadRequest rejection path. * docs/testing.md — extend the runs.rs row to cover the new MR-794 contract tests; add the staged_writes.rs row. * docs/releases/v0.4.1.md (new) — release note covering the rewire, test additions, residuals, and files changed. * AGENTS.md (CLAUDE.md symlink) — update the atomic-per-query description and the L2 capability matrix row. Stale-reference cleanup (MR-771 leftovers): * docs/storage.md — drop live _graph_runs.lance / _graph_run_actors.lance from the layout diagram and prose; mark legacy. * docs/branches-commits.md — move __run__<id> to a legacy note; remove publish_run from the publish-trigger list. * docs/audit.md — refresh _as API list (drop begin_run_as / publish_run_as); legacy RunRecord.actor_id moved to a historical note. * docs/constants.md — mark run registry / branch-prefix rows as legacy. * docs/cli.md — replace the legacy omnigraph run * quickstart block with omnigraph commit list/show. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
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(The legacy `omnigraph run list/show/publish/abort` subcommands were removed in MR-771; mutations and loads publish atomically and the commit graph (`omnigraph commit list`) is the audit surface.)
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`query lint` and `query check` are the same command surface. In v1, repo-backed
lint uses local or `s3://` repo URIs; HTTP targets are only supported when you
also pass `--schema`.
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## Config
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`omnigraph.yaml` lets the CLI and server share named graphs, defaults, and
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query roots:
```yaml
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graphs:
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local:
uri: ./demo.omni
dev:
uri: http://127.0.0.1:8080
bearer_token_env: OMNIGRAPH_BEARER_TOKEN
cli:
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graph: local
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branch: main
query:
roots:
- queries
- .
```
The config file can also define:
- server bind defaults
- auth env files
- query aliases for common read and change commands
- `policy.file` for Cedar authorization rules
When policy is enabled, `schema apply` is authorized through the
`schema_apply` action and is typically limited to admins on protected `main`.
## Updating
Update both binaries in place from the latest GitHub Release:
```bash
omnigraph update # default: stable channel, prompts for confirmation
omnigraph update --check # only check; do not install
omnigraph update --yes # skip prompt
omnigraph update --channel edge
```
Homebrew installs are detected and short-circuited with a hint to run
`brew upgrade ModernRelay/tap/omnigraph` instead. Each invocation of
`omnigraph` also performs a best-effort cached check (24-hour TTL) for newer
releases and prints a one-line stderr notice; suppress with
`OMNIGRAPH_NO_UPDATE_CHECK=1`. Full details: [install.md](install.md).