feat: merge ingest and scan

* docs: add CLI component reuse guidance

* docs: add unified ingest ux design

* Refine unified ingest UX design after adversarial review iteration 1

* Refine unified ingest UX design after adversarial review iteration 2

* Refine unified ingest UX design after adversarial review iteration 3

* feat(cli): route public connection ingest command

* feat(cli): hide standalone scan from public help

* feat(cli): plan public ingest depth and query history

* feat(cli): execute public database ingest facets

* feat(ingest): read connection query history config

* fix(cli): use public ingest wording

* fix(config): stop generating ingest adapter allow lists

* docs: document public ingest command

* test: align ingest surface expectations

* docs: add unified ingest public CLI surface plan

* feat(cli): preflight deep public ingest readiness

* feat(setup): store query history in connection context

* feat(setup): store database context depth

* feat(setup): verify context readiness by database depth

* fix(setup): keep context build foreground only

* fix(config): reject reserved ingest connection ids

* test: close unified ingest v1 expectations

* docs: add unified ingest v1 closure plan

* fix(ingest): bypass adapter allow-list for public source ingest

* fix(ingest): honor query history window intent

* fix(ingest): hide scan internals from public database ingest

* feat(ingest): use foreground view for interactive public ingest

* fix(setup): use schema context and query history wording

* test(cli): verify unified ingest public output

* docs: add unified ingest v1 public output closure plan

* fix(setup): forward query history flags

* fix(setup): prompt for postgres query history

* fix(status): report query history readiness

* fix(ingest): remove legacy public guidance

* fix(ingest): polish foreground retry copy

* docs(examples): use unified query history wording

* chore(ingest): finish public query history cleanup

* docs: add unified ingest v1 query history status cleanup plan

* test(docs): cover unified ingest public docs

* docs: align ingest CLI reference with unified UX

* docs: update context build guides for unified ingest

* docs: update setup and primary source ingest wording

* docs: stop advertising adapter-backed example ingest

* docs: close unified ingest public docs gaps

* docs: add unified ingest v1 docs site closure plan

* fix: render unified ingest foreground warnings

* fix: explain query history schema order

* fix: add public ingest retry guidance

* fix: align setup next steps with unified ingest

* fix: remove scan wording from demo progress

* test: verify unified ingest ux closure

* docs: add unified ingest v1 foreground and retry closure plan

* fix(cli): preserve query-history pull config in public ingest

* fix(cli): omit hidden commands from docs command tree

* test(cli): close unified ingest final public surface checks

* docs: add unified ingest v1 final public surface closure plan

* fix(cli): use public source labels in ingest reports

* fix(cli): suppress low-level public ingest output

* test(cli): verify unified ingest public plain output

* docs: add unified ingest v1 public plain output closure plan

* fix(cli): add public ingest copy sanitizers

* fix(cli): sanitize public ingest progress copy

* fix(cli): rename setup schema scope prompt

* docs(plan): add progress copy closure; test: align setup back-nav fixture

Adds the iter9 plan and updates the setup back-navigation test fixture
to pass disableQueryHistory plus listSchemas/listTables stubs that the
unified ingest setup step now requires.

* docs(plan): add final ux labels plan with narrowed label scans

* fix(cli): aggregate unsupported query-history warnings

* fix(cli): align setup database labels

* test(cli): fix setup database test type-check

* fix(cli): remove primary-source wording from setup output

* test(cli): verify unified ingest setup closure

* docs(plan): add unified ingest v1 verification copy closure plan

* fix(cli): remove top-level scan command

* fix(cli): remove legacy ingest and wiki commands

* Merge scan into ingest flow

* feat(cli): split ingest progress into per-phase rows, rename work units to tasks

Each database target in the unified ingest dashboard now renders one row per
real subprocess (Schema, then Query history when enabled) instead of a single
combined bar. Each phase has its own monotonic 0-100% bar so the progress
never snaps back to zero when historic-sql starts after scan completes.
Completed phases keep their final bar, summary, and elapsed time visible as
an inline audit trail; queued and skipped phases are shown explicitly.

Also rename user-facing "work units" / "Failed work units" to "tasks" /
"Failed tasks" in ingest output and parseIngestSummary. The parser still
accepts the legacy "Work units:" wording in captured output for backward
compat. Internal memory-flow event names and type fields are left alone.

* Fix test harness failures

* Fix CI smoke checks

---------

Co-authored-by: Andrey Avtomonov <7889985+andreybavt@users.noreply.github.com>

packages/context/src/agent/agent-runner.service.test.ts

@@ -52,11 +52,8 @@ describe('AgentRunnerService.runLoop', () => {
       telemetryTags: { source: 'test' },
     });
     const call = (generateText as any).mock.calls[0][0];
-    expect(call.messages).toEqual([
-      { role: 'system', content: 'SYS' },
-      { role: 'user', content: 'USR' },
-    ]);
-    expect(call.system).toBeUndefined();
+    expect(call.system).toEqual({ role: 'system', content: 'SYS' });
+    expect(call.messages).toEqual([{ role: 'user', content: 'USR' }]);
     expect(call.prompt).toBeUndefined();
     expect(call.tools).toEqual(tools);
     expect(call.stopWhen).toBe(17);
@@ -81,10 +78,8 @@ describe('AgentRunnerService.runLoop', () => {
     expect(llmProvider.getModel).toHaveBeenCalledWith('candidateExtraction');
     expect(generateText).toHaveBeenCalledWith(
       expect.objectContaining({
-        messages: [
-          { role: 'system', content: 'system' },
-          { role: 'user', content: 'user' },
-        ],
+        system: { role: 'system', content: 'system' },
+        messages: [{ role: 'user', content: 'user' }],
       }),
     );
   });

packages/context/src/agent/agent-runner.service.ts

@@ -36,6 +36,14 @@ export interface AgentRunnerServiceDeps {
   logger?: KtxLogger;
 }
 
+function splitSystemPromptMessages(messages: ReturnType<KtxMessageBuilder['wrapSimple']>['messages']) {
+  const systemMessages = messages.filter((message) => message.role === 'system');
+  return {
+    system: systemMessages.length === 0 ? undefined : systemMessages.length === 1 ? systemMessages[0] : systemMessages,
+    messages: messages.filter((message) => message.role !== 'system'),
+  };
+}
+
 export class AgentRunnerService {
   private readonly logger: KtxLogger;
 
@@ -54,6 +62,7 @@ export class AgentRunnerService {
         tools: params.toolSet,
         model,
       });
+      const promptMessages = splitSystemPromptMessages(built.messages);
 
       await this.deps.debugRequestRecorder?.record(
         summarizeKtxLlmDebugRequest({
@@ -76,7 +85,8 @@ export class AgentRunnerService {
         experimental_repairToolCall: this.deps.llmProvider.repairToolCallHandler({
           source: params.telemetryTags.operationName ?? 'ktx-agent-runner',
         }),
-        messages: built.messages,
+        ...(promptMessages.system ? { system: promptMessages.system } : {}),
+        messages: promptMessages.messages,
         tools: built.tools as Record<string, Tool>,
         onStepFinish: async () => {
           stepIndex += 1;