chore(workspace): gate dead-code with knip production mode (#196)

* refactor(workspace): relocate @ktx/llm source into packages/cli/src/llm

* refactor(workspace): rewrite @ktx/llm imports to relative paths

* refactor(workspace): fold internal packages into cli

* chore(workspace): gate dead-code with knip production mode

Turn on production-mode knip plus an autofix run in pre-commit and the
`pnpm dead-code` script, document the `/** @internal */` convention for
test-only exports in AGENTS.md, annotate test-only exports across the
CLI with that JSDoc, and drop dead exports/wrappers the new gate
surfaced (e.g. `cli-project.ts`, `lookerRuntimeSourceToFileAdapterSource`,
`createLocalScanEnrichmentProvidersFromConfig`,
`PGLITE_OWNER_PROCESS_BACKEND_CAPABILITIES`, stale type re-exports).
Replace the loose `ignoreIssues` allowlist in `knip.json` with explicit
production entries so cross-package barrel leaks are caught.

* refactor(cli): delete internal barrel index.ts files

The 34 `index.ts` re-export barrels inside `packages/cli/src/` were
holdovers from the pre-fold multi-workspace structure. Post-fold-in they
served no production purpose: external consumers go through the single
package main entry, and in-repo callers mostly imported through them
only because the path was short. Internally, knip flagged most barrel
re-exports as production-dead (only reached via tests).

This change:
- Deletes every internal barrel except `packages/cli/src/index.ts`
  (the published package entry).
- Rewrites ~270 source/test files to import each name directly from
  the file that defines it.
- Moves `tools/warehouse-verification/index.ts` to
  `create-warehouse-verification-tools.ts` (the function it defined
  locally) and updates its single consumer.
- Renames `search/backend-conformance.ts` → `.test-utils.ts` to match
  the existing test-helper file convention.
- Deletes 13 dead test-only chains (dbt-descriptions/*,
  live-database/extracted-schema, live-database/structural-sync,
  relationship-* feedback/review chain) plus their tests and a
  cascading orphan integration test.
- Updates test mocks that pointed at deleted barrel paths
  (notion-client, connector barrels in scan/local-scan-connectors
  tests) to mock the source files instead.
- Points the maintainer benchmark script
  (`scripts/relationship-benchmark-report.mjs`) at source files
  instead of `dist/context/scan/index.js`.
- Drops the barrel `!` entries from `knip.json`; adds explicit
  production entries only for the benchmark code reached via dist by
  the maintainer script.

Net: 413 files changed, ~1.2k insertions, ~9.4k deletions.

`pnpm run dead-code` (Biome + knip default + knip production) and
`pnpm run type-check` are clean; 2277 tests pass.

* refactor(workspace): rename @ktx/cli to @kaelio/ktx and pack it directly

Promote the CLI workspace package to the public name `@kaelio/ktx` and
drop the separate `scripts/build-public-npm-package.mjs` wrapper. The
CLI package is now publishable in place (`publishConfig.access: public`,
`provenance: true`), so artifact packing uses `pnpm pack` against
`packages/cli/` instead of assembling a parallel package tree.

Updates all workspace filter invocations, docs, tests, and release
readiness checks to reference the new package name, and folds the
tarball-name helper into `scripts/public-npm-release-metadata.mjs`.

* docs: align "agent clients" and "data agents" terminology

Replace "client agents" with "agent clients" and "database agents" with
"data agents" across AGENTS.md, README.md, the docs-site copy, and the
matching setup-agents test description, matching the canonical
vocabulary in docs/terminology.md.

Also moves packages/cli/tsconfig.json's tsBuildInfoFile from
node_modules/.cache/ to dist/.tsbuildinfo so incremental builds survive
node_modules reinstalls.

* refactor(release): single source of truth for package version

Make packages/cli/package.json the single source of truth for the
@kaelio/ktx version. publicNpmPackageVersion() now reads it directly,
so artifact filenames, release-readiness checks, and the Python wheel
version all derive from one field. The duplicate
release-policy.json.publicNpmPackageVersion is removed.

Previously the two fields could drift: tarballs were named
kaelio-ktx-0.4.1.tgz while internally containing
@kaelio/ktx@0.0.0-private.

- update-public-release-version.mjs rewrites both Python pyproject.toml
  files (ktx-daemon, ktx-sl) alongside the npm package.jsons,
  normalizing the version for PEP 440 (e.g. 0.1.0-rc.2 -> 0.1.0rc2).
- semantic-release-config.cjs adds the two pyproject.toml files to
  @semantic-release/git assets so the release commit back to main
  carries every version source in lockstep.
- The six "?? '0.0.0-private'" fallback literals across the CLI are
  replaced with "?? getKtxCliPackageInfo().version", and
  createDefaultKtxMcpServer makes its version arg required.
- docs/release.md describes the actual commit-back model: the dev tree
  always reflects the most recent release; no sentinel pin to
  maintain.

Verified: pnpm run artifacts:build now produces
kaelio-ktx-0.4.1.tgz and kaelio_ktx-0.4.1-py3-none-any.whl with
@kaelio/ktx@0.4.1 inside. Full type-check, dead-code, and
2287 vitests + 173 script tests pass.

* refactor(cli): inject embedding provider resolution and detect sentence-transformers runtime

Make resolveProjectEmbeddingProvider and runtimeIo injectable in ingest and
scan command entrypoints so tests can stub them, and teach
resolvePublicIngestRuntimeRequirements to flag the local-embeddings runtime
feature when ktx.yaml selects sentence-transformers.

* chore(cli): mark buildLocalStatsStatus and LocalStatsStatus as @internal

Both symbols are consumed only by status-project.test.ts. Annotating with
/** @internal */ keeps knip's production-mode check clean without changing
runtime behavior.

* fix(cli): use real package metadata in print-command-tree

The stubbed package name embedded a forbidden product identifier that
tripped the boundary check in CI. Read the metadata from package.json
instead — keeps the rendered tree unchanged and removes a duplicate
source of truth.

* feat(cli): show embedding coverage in `ktx status`, drop duplicate disk counts

Inline `(N embedded)` next to the Wiki scope counts and Semantic-layer
source counts, computed with `SUM(embedding_json IS NOT NULL)` over
`knowledge_pages` and `local_sl_sources`. Rename the "Knowledge" label to
"Wiki" (canonical per `docs/terminology.md`) and rename the matching
`localStats.knowledgePages` field to `localStats.wikiPages`.

Drop `wiki=N md` and `semantic-layer=N yaml` from the Disk row — those
duplicated the per-surface rows above. Disk now reports only actual byte
usage (db, cache, raw-sources). The unused `wikiGlobalMarkdownCount` /
`semanticLayerYamlCount` fields, the `isMarkdownEntry` / `isYamlEntry`
helpers, and the `filter` arg on `summarizeDir` are removed.

packages/cli/src/setup-models.ts

@@ -1,16 +1,14 @@
 import { execFile } from 'node:child_process';
 import { writeFile } from 'node:fs/promises';
 import { promisify } from 'node:util';
-import { resolveLocalKtxLlmConfig, runClaudeCodeAuthProbe } from '@ktx/context';
-import { resolveKtxConfigReference } from '@ktx/context/core';
-import {
-  type KtxProjectConfig,
-  type KtxProjectLlmConfig,
-  loadKtxProject,
-  markKtxSetupStateStepComplete,
-  serializeKtxProjectConfig,
-} from '@ktx/context/project';
-import { type KtxLlmConfig, type KtxLlmHealthCheckResult, runKtxLlmHealthCheck } from '@ktx/llm';
+import { resolveLocalKtxLlmConfig } from './context/llm/local-config.js';
+import { runClaudeCodeAuthProbe } from './context/llm/claude-code-runtime.js';
+import { resolveKtxConfigReference } from './context/core/config-reference.js';
+import { type KtxProjectConfig, type KtxProjectLlmConfig, serializeKtxProjectConfig } from './context/project/config.js';
+import { loadKtxProject } from './context/project/project.js';
+import { markKtxSetupStateStepComplete } from './context/project/setup-config.js';
+import type { KtxLlmConfig } from './llm/types.js';
+import { type KtxLlmHealthCheckResult, runKtxLlmHealthCheck } from './llm/model-health.js';
 import {
   formatClaudeCodePromptCachingWarning,
   ignoredClaudeCodePromptCachingFields,
@@ -51,6 +49,7 @@ export type KtxSetupModelResult =
   | { status: 'missing-input'; projectDir: string }
   | { status: 'failed'; projectDir: string };
 
+/** @internal */
 export interface AnthropicModelChoice {
   id: string;
   label: string;
@@ -59,6 +58,7 @@ export interface AnthropicModelChoice {
 
 export type KtxSetupLlmBackend = 'anthropic' | 'vertex' | 'claude-code';
 
+/** @internal */
 export interface KtxSetupModelPromptAdapter {
   select(options: { message: string; options: KtxSetupPromptOption[] }): Promise<string>;
   text(options: { message: string; placeholder?: string }): Promise<string | undefined>;
@@ -82,8 +82,7 @@ export interface KtxSetupModelDeps {
   spinner?: () => KtxCliSpinner;
 }
 
-export const BUNDLED_ANTHROPIC_MODEL_REGISTRY_VERSION = '2026-05-07';
-
+/** @internal */
 export const BUNDLED_ANTHROPIC_MODELS: AnthropicModelChoice[] = [
   { id: 'claude-sonnet-4-6', label: 'Claude Sonnet 4.6', recommended: true },
   { id: 'claude-opus-4-6', label: 'Claude Opus 4.6', recommended: false },
@@ -131,7 +130,7 @@ const execFileAsync = promisify(execFile);
 
 type AnthropicModelDiscoveryErrorReason = 'authentication' | 'http' | 'empty-response';
 
-export class AnthropicModelDiscoveryError extends Error {
+class AnthropicModelDiscoveryError extends Error {
   constructor(
     message: string,
     public readonly reason: AnthropicModelDiscoveryErrorReason,
@@ -212,6 +211,7 @@ async function defaultListGcloudProjects(): Promise<GcloudProjectChoice[]> {
     .filter((project): project is GcloudProjectChoice => Boolean(project));
 }
 
+/** @internal */
 export async function fetchAnthropicModels(
   apiKey: string,
   fetchFn: typeof fetch = fetch,