remove sentence transformers

This commit is contained in:
Abhishek Kumar 2026-02-05 11:57:45 +05:30
parent e33d92b664
commit 2d4a7b49b0
10 changed files with 65 additions and 427 deletions

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@ -14,5 +14,4 @@ sentry-sdk[fastapi]==2.38.0
sqlalchemy[asyncio]==2.0.43
msgpack==1.1.2
docling[rapidocr]==2.68.0
sentence-transformers==5.2.0
pgvector==0.4.2

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@ -103,9 +103,8 @@ async def process_document(
The document status will be updated from 'pending' -> 'processing' -> 'completed' or 'failed'.
Embedding Services:
* openai (default): High-quality 1536-dimensional embeddings (requires OPENAI_API_KEY)
* sentence_transformer: Free, offline-capable, 384-dimensional embeddings
Embedding:
Uses OpenAI text-embedding-3-small (1536-dimensional embeddings, requires API key configured in Model Configurations).
Access Control:
* Users can only process documents in their organization.
@ -134,12 +133,11 @@ async def process_document(
request.s3_key,
user.selected_organization_id,
128, # max_tokens (default)
request.embedding_service,
)
logger.info(
f"Created document {request.document_uuid} (id={document.id}) and enqueued processing "
f"with {request.embedding_service} embeddings, org {user.selected_organization_id}"
f"with OpenAI embeddings, org {user.selected_organization_id}"
)
return DocumentResponseSchema(

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@ -1,7 +1,7 @@
"""Pydantic schemas for knowledge base operations."""
from datetime import datetime
from typing import Any, Dict, List, Literal, Optional
from typing import Any, Dict, List, Optional
from pydantic import BaseModel, Field
@ -29,11 +29,6 @@ class ProcessDocumentRequestSchema(BaseModel):
document_uuid: str = Field(..., description="Document UUID to process")
s3_key: str = Field(..., description="S3 key of the uploaded file")
embedding_service: Literal["sentence_transformer", "openai"] = Field(
default="openai",
description="Embedding service to use for processing. "
"Options: 'openai' (default, 1536-dim, requires API key) or 'sentence_transformer' (free, 384-dim)",
)
class DocumentResponseSchema(BaseModel):

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@ -4,14 +4,12 @@ from .embedding import (
BaseEmbeddingService,
EmbeddingAPIKeyNotConfiguredError,
OpenAIEmbeddingService,
SentenceTransformerEmbeddingService,
)
from .json_parser import parse_llm_json
__all__ = [
"BaseEmbeddingService",
"EmbeddingAPIKeyNotConfiguredError",
"SentenceTransformerEmbeddingService",
"OpenAIEmbeddingService",
"parse_llm_json",
]

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@ -2,11 +2,9 @@
from .base import BaseEmbeddingService
from .openai_service import EmbeddingAPIKeyNotConfiguredError, OpenAIEmbeddingService
from .sentence_transformer_service import SentenceTransformerEmbeddingService
__all__ = [
"BaseEmbeddingService",
"EmbeddingAPIKeyNotConfiguredError",
"SentenceTransformerEmbeddingService",
"OpenAIEmbeddingService",
]

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@ -1,350 +0,0 @@
"""Sentence Transformer embedding service.
This module provides document processing capabilities using:
- Sentence-transformers for embeddings (all-MiniLM-L6-v2)
- Docling for document conversion and chunking
- pgvector for vector similarity search
Setup for offline usage:
1. First run: Downloads and caches models to ~/.cache/sentence_transformers
2. Subsequent runs: Uses cached models (no internet needed)
3. For fully offline mode: Set TRANSFORMERS_OFFLINE=1 and HF_HUB_OFFLINE=1
"""
import os
from pathlib import Path
from typing import Any, Dict, List, Optional
from docling.chunking import HybridChunker
from docling.document_converter import DocumentConverter
from docling_core.transforms.chunker.tokenizer.huggingface import HuggingFaceTokenizer
from loguru import logger
from sentence_transformers import SentenceTransformer
from transformers import AutoTokenizer
from api.db.db_client import DBClient
from api.db.models import KnowledgeBaseChunkModel
from .base import BaseEmbeddingService
# Set environment variables for model caching
os.environ.setdefault("TRANSFORMERS_OFFLINE", "0")
os.environ.setdefault("HF_HUB_OFFLINE", "0")
os.environ.setdefault(
"SENTENCE_TRANSFORMERS_HOME", os.path.expanduser("~/.cache/sentence_transformers")
)
# Model configuration
DEFAULT_MODEL_ID = "sentence-transformers/all-MiniLM-L6-v2"
EMBEDDING_DIMENSION = 384 # Dimension for all-MiniLM-L6-v2
class SentenceTransformerEmbeddingService(BaseEmbeddingService):
"""Embedding service using Sentence Transformers."""
def __init__(
self,
db_client: DBClient,
model_id: str = DEFAULT_MODEL_ID,
max_tokens: int = 512,
):
"""Initialize the Sentence Transformer embedding service.
Args:
db_client: Database client for storing documents and chunks
model_id: Sentence-transformers model ID (default: all-MiniLM-L6-v2)
max_tokens: Maximum number of tokens per chunk (default: 512)
Note: This applies to the contextualized text (with headings/captions)
"""
self.db = db_client
self.model_id = model_id
self.max_tokens = max_tokens
# Initialize embedding model
logger.info(f"Loading embedding model: {model_id}")
try:
# Try to load from cache first (local_files_only=True)
self.embedding_model = SentenceTransformer(
model_id,
cache_folder=os.environ.get("SENTENCE_TRANSFORMERS_HOME"),
local_files_only=True,
)
logger.info("Loaded model from cache")
except Exception as e:
logger.warning(f"Model not in cache, downloading: {e}")
# If not in cache, download it (this will cache it for next time)
self.embedding_model = SentenceTransformer(
model_id,
cache_folder=os.environ.get("SENTENCE_TRANSFORMERS_HOME"),
)
logger.info("Model downloaded and cached")
# Initialize tokenizer for chunking with max_tokens
logger.info(f"Loading tokenizer: {model_id} with max_tokens={max_tokens}")
try:
# Try to load from cache first
self.tokenizer = HuggingFaceTokenizer(
tokenizer=AutoTokenizer.from_pretrained(
model_id,
local_files_only=True,
),
max_tokens=max_tokens,
)
logger.info("Loaded tokenizer from cache")
except Exception as e:
logger.warning(f"Tokenizer not in cache, downloading: {e}")
# If not in cache, download it
self.tokenizer = HuggingFaceTokenizer(
tokenizer=AutoTokenizer.from_pretrained(model_id),
max_tokens=max_tokens,
)
logger.info("Tokenizer downloaded and cached")
# Initialize chunker
logger.info(f"Initializing HybridChunker with max_tokens={max_tokens}")
self.chunker = HybridChunker(tokenizer=self.tokenizer)
# Initialize document converter
self.converter = DocumentConverter()
def get_model_id(self) -> str:
"""Return the model identifier."""
return self.model_id
def get_embedding_dimension(self) -> int:
"""Return the embedding dimension."""
return EMBEDDING_DIMENSION
async def embed_texts(self, texts: List[str]) -> List[List[float]]:
"""Embed a batch of texts.
Args:
texts: List of text strings to embed
Returns:
List of embedding vectors (each vector is a list of floats)
"""
embeddings = self.embedding_model.encode(
texts,
show_progress_bar=False,
convert_to_numpy=True,
)
return [embedding.tolist() for embedding in embeddings]
async def embed_query(self, query: str) -> List[float]:
"""Embed a single query text.
Args:
query: Query text to embed
Returns:
Embedding vector as list of floats
"""
embedding = self.embedding_model.encode([query])[0]
return embedding.tolist()
async def search_similar_chunks(
self,
query: str,
organization_id: int,
limit: int = 5,
document_uuids: Optional[List[str]] = None,
) -> List[Dict[str, Any]]:
"""Search for similar chunks using vector similarity.
Returns top-k most similar chunks without any threshold filtering.
Apply similarity thresholds and reranking at the application layer.
Args:
query: Search query text
organization_id: Organization ID for scoping
limit: Maximum number of results to return
document_uuids: Optional list of document UUIDs to filter by
Returns:
List of dictionaries with chunk data and similarity scores
"""
# Generate query embedding
query_embedding = await self.embed_query(query)
# Perform vector similarity search
results = await self.db.search_similar_chunks(
query_embedding=query_embedding,
organization_id=organization_id,
limit=limit,
document_uuids=document_uuids,
embedding_model=self.model_id,
)
return results
async def process_document(
self,
file_path: str,
organization_id: int,
created_by: int,
custom_metadata: dict = None,
):
"""Process a document: convert, chunk, embed, and store in database.
Args:
file_path: Path to the document file
organization_id: Organization ID for scoping
created_by: User ID who uploaded the document
custom_metadata: Optional custom metadata dictionary
Returns:
The created document record
"""
try:
# Extract file metadata
filename = Path(file_path).name
file_hash = self.db.compute_file_hash(file_path)
file_size = os.path.getsize(file_path)
mime_type = self.db.get_mime_type(file_path)
# Check if document already exists
existing_doc = await self.db.get_document_by_hash(
file_hash, organization_id
)
if existing_doc:
logger.info(f"Document already exists: {filename} (hash: {file_hash})")
return existing_doc
# Create document record
doc_record = await self.db.create_document(
organization_id=organization_id,
created_by=created_by,
filename=filename,
file_size_bytes=file_size,
file_hash=file_hash,
mime_type=mime_type,
custom_metadata=custom_metadata or {},
)
logger.info(f"Processing document: {filename}")
# Update status to processing
await self.db.update_document_status(doc_record.id, "processing")
# Step 1: Convert document using docling
logger.info("Converting document with docling...")
conversion_result = self.converter.convert(file_path)
doc = conversion_result.document
# Store docling metadata
docling_metadata = {
"num_pages": len(doc.pages) if hasattr(doc, "pages") else None,
"document_type": type(doc).__name__,
}
# Step 2: Chunk the document
logger.info(f"Chunking document with max_tokens={self.max_tokens}...")
chunks = list(self.chunker.chunk(dl_doc=doc))
total_chunks = len(chunks)
logger.info(f"Generated {total_chunks} chunks")
# Step 3: Process each chunk
chunk_texts = []
chunk_records = []
token_counts = []
for i, chunk in enumerate(chunks):
# Get chunk text
chunk_text = chunk.text
# Get contextualized text (enriched with surrounding context)
contextualized_text = self.chunker.contextualize(chunk=chunk)
# Calculate actual token count using the tokenizer
text_to_tokenize = (
contextualized_text if contextualized_text else chunk_text
)
token_count = len(
self.tokenizer.tokenizer.encode(
text_to_tokenize, add_special_tokens=False
)
)
token_counts.append(token_count)
# Prepare chunk metadata
chunk_metadata = {}
if hasattr(chunk, "meta") and chunk.meta:
chunk_metadata = {
"doc_items": (
[str(item) for item in chunk.meta.doc_items]
if hasattr(chunk.meta, "doc_items")
else []
),
"headings": (
chunk.meta.headings
if hasattr(chunk.meta, "headings")
else []
),
}
# Create chunk record (without embedding yet)
chunk_record = KnowledgeBaseChunkModel(
document_id=doc_record.id,
organization_id=organization_id,
chunk_text=chunk_text,
contextualized_text=contextualized_text,
chunk_index=i,
chunk_metadata=chunk_metadata,
embedding_model=self.model_id,
embedding_dimension=EMBEDDING_DIMENSION,
token_count=token_count,
)
chunk_records.append(chunk_record)
# Use contextualized text for embedding if available
chunk_texts.append(text_to_tokenize)
# Log chunk statistics
if token_counts:
avg_tokens = sum(token_counts) / len(token_counts)
min_tokens = min(token_counts)
max_tokens = max(token_counts)
logger.info("Chunk token statistics:")
logger.info(f" - Average: {avg_tokens:.1f} tokens")
logger.info(f" - Min: {min_tokens} tokens")
logger.info(f" - Max: {max_tokens} tokens")
# Step 4: Generate embeddings in batch
logger.info("Generating embeddings...")
embeddings = await self.embed_texts(chunk_texts)
# Step 5: Attach embeddings to chunk records
for chunk_record, embedding in zip(chunk_records, embeddings):
chunk_record.embedding = embedding
# Step 6: Save all chunks in batch
logger.info("Storing chunks in database...")
await self.db.create_chunks_batch(chunk_records)
# Update document status to completed
await self.db.update_document_status(
doc_record.id,
"completed",
total_chunks=total_chunks,
docling_metadata=docling_metadata,
)
logger.info(f"Successfully processed document: {filename}")
logger.info(f" - Total chunks: {total_chunks}")
logger.info(f" - Document ID: {doc_record.id}")
logger.info(f" - Document UUID: {doc_record.document_uuid}")
return doc_record
except Exception as e:
logger.error(f"Error processing document: {e}")
# Update document status to failed if it exists
if "doc_record" in locals():
await self.db.update_document_status(
doc_record.id, "failed", error_message=str(e)
)
raise

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@ -2,7 +2,6 @@
import os
import tempfile
from typing import Literal
from docling.chunking import HybridChunker
from docling.document_converter import DocumentConverter
@ -12,13 +11,10 @@ from transformers import AutoTokenizer
from api.db import db_client
from api.db.models import KnowledgeBaseChunkModel
from api.services.gen_ai import (
OpenAIEmbeddingService,
SentenceTransformerEmbeddingService,
)
from api.services.gen_ai import OpenAIEmbeddingService
from api.services.storage import storage_fs
# For tokenization/chunking - use SentenceTransformer tokenizer as baseline
# For tokenization/chunking
TOKENIZER_MODEL = "sentence-transformers/all-MiniLM-L6-v2"
@ -28,7 +24,6 @@ async def process_knowledge_base_document(
s3_key: str,
organization_id: int,
max_tokens: int = 128,
embedding_service: Literal["sentence_transformer", "openai"] = "openai",
):
"""Process a knowledge base document: download, chunk, embed, and store.
@ -38,9 +33,6 @@ async def process_knowledge_base_document(
s3_key: S3 key where the file is stored
organization_id: Organization ID
max_tokens: Maximum number of tokens per chunk (default: 128)
embedding_service: Embedding service to use (default: "openai")
- "openai": Use OpenAI text-embedding-3-small (1536-dim, requires API key)
- "sentence_transformer": Use SentenceTransformer (all-MiniLM-L6-v2, 384-dim, free)
"""
logger.info(
f"Starting knowledge base document processing for document_id={document_id}, "
@ -125,56 +117,42 @@ async def process_knowledge_base_document(
mime_type=mime_type,
)
# Initialize the embedding service based on the parameter
if embedding_service == "openai":
logger.info(
f"Initializing OpenAI embedding service with max_tokens={max_tokens}"
# Initialize the OpenAI embedding service
logger.info(
f"Initializing OpenAI embedding service with max_tokens={max_tokens}"
)
# Try to get user's embeddings configuration
embeddings_api_key = None
embeddings_model = None
if document.created_by:
user_config = await db_client.get_user_configurations(
document.created_by
)
# Try to get user's embeddings configuration
embeddings_api_key = None
embeddings_model = None
if document.created_by:
user_config = await db_client.get_user_configurations(
document.created_by
if user_config.embeddings:
embeddings_api_key = user_config.embeddings.api_key
embeddings_model = user_config.embeddings.model
logger.info(
f"Using user embeddings config: model={embeddings_model}"
)
if user_config.embeddings:
embeddings_api_key = user_config.embeddings.api_key
embeddings_model = user_config.embeddings.model
logger.info(
f"Using user embeddings config: model={embeddings_model}"
)
# Check if API key is configured
if not embeddings_api_key:
error_message = (
"OpenAI API key not configured. Please set your API key in "
"Model Configurations > Embedding to process documents."
)
logger.warning(f"Document {document_id}: {error_message}")
await db_client.update_document_status(
document_id, "failed", error_message=error_message
)
return
# Check if API key is configured
if not embeddings_api_key:
error_message = (
"OpenAI API key not configured. Please set your API key in "
"Model Configurations > Embedding to process documents."
)
logger.warning(f"Document {document_id}: {error_message}")
await db_client.update_document_status(
document_id, "failed", error_message=error_message
)
return
service = OpenAIEmbeddingService(
db_client=db_client,
max_tokens=max_tokens,
api_key=embeddings_api_key,
model_id=embeddings_model or "text-embedding-3-small",
)
elif embedding_service == "sentence_transformer":
logger.info(
f"Initializing SentenceTransformer embedding service with max_tokens={max_tokens}"
)
service = SentenceTransformerEmbeddingService(
db_client=db_client,
max_tokens=max_tokens,
)
else:
raise ValueError(
f"Invalid embedding_service: {embedding_service}. "
f"Must be 'sentence_transformer' or 'openai'"
)
service = OpenAIEmbeddingService(
db_client=db_client,
max_tokens=max_tokens,
api_key=embeddings_api_key,
model_id=embeddings_model or "text-embedding-3-small",
)
# Step 1: Convert document with docling
logger.info("Converting document with docling")
@ -265,8 +243,8 @@ async def process_knowledge_base_document(
logger.info(f" - Min: {min_tokens} tokens")
logger.info(f" - Max: {max_tokens_actual} tokens")
# Step 6: Generate embeddings using the embedding service
logger.info(f"Generating embeddings using {embedding_service}")
# Step 6: Generate embeddings using OpenAI
logger.info(f"Generating embeddings using {service.get_model_id()}")
embeddings = await service.embed_texts(chunk_texts)
# Step 7: Attach embeddings to chunk records

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@ -54,7 +54,14 @@ You should see your server's IP address in the response.
## Step 2: Quick Setup (Recommended)
Once your DNS is configured, run the automated setup script that handles the rest:
Once your DNS is configured, run the automated setup script that handles the rest.
<Note>
You must be at the same place where you had run `setup_remote.sh` from. The directory should contain `dograh/` with the artifacts that got created when `setup_remote.sh` was run.
</Note>
<Note>
You must not move the `dograh/` directory to a different location after running `setup_custom_domain.sh`, since we set up auto certificate renewal script as certbot renewal hook pointing to the `dograh/` directory.
</Note>
```bash
curl -o setup_custom_domain.sh https://raw.githubusercontent.com/dograh-hq/dograh/main/scripts/setup_custom_domain.sh && chmod +x setup_custom_domain.sh && sudo ./setup_custom_domain.sh

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@ -106,6 +106,7 @@ The setup script creates the following files in the `dograh/` directory:
| File | Purpose |
|------|---------|
| `docker-compose.yaml` | Main Docker Compose configuration |
| `turnserver.conf` | Configuration for TURN server |
| `nginx.conf` | nginx reverse proxy configuration with your IP |
| `generate_certificate.sh` | Script to regenerate SSL certificates |
| `certs/local.crt` | Self-signed SSL certificate |

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@ -245,8 +245,21 @@ server {
NGINX_EOF
echo -e "${GREEN}✓ nginx.conf updated${NC}"
# Update .env file with domain name
echo -e "${BLUE}[6/8] Updating environment variables...${NC}"
if [[ -f ".env" ]]; then
# Update BACKEND_API_ENDPOINT to use domain
sed -i.bak "s|^BACKEND_API_ENDPOINT=.*|BACKEND_API_ENDPOINT=https://$DOMAIN_NAME|" .env
# Update TURN_HOST to use domain
sed -i.bak "s|^TURN_HOST=.*|TURN_HOST=$DOMAIN_NAME|" .env
rm -f .env.bak
echo -e "${GREEN}✓ .env updated with domain name${NC}"
else
echo -e "${YELLOW}⚠ .env file not found - skipping environment update${NC}"
fi
# Setup auto-renewal
echo -e "${BLUE}[6/7] Setting up automatic certificate renewal...${NC}"
echo -e "${BLUE}[7/8] Setting up automatic certificate renewal...${NC}"
DOGRAH_PATH=$(pwd)
# Create renewal hook script that copies new certificates and restarts nginx
@ -268,7 +281,7 @@ certbot renew --dry-run --quiet && echo -e "${GREEN}✓ Auto-renewal configured
# Start Dograh services
echo ""
echo -e "${BLUE}[7/7] Starting Dograh services...${NC}"
echo -e "${BLUE}[8/8] Starting Dograh services...${NC}"
docker compose --profile remote up -d --pull always
echo ""
@ -287,6 +300,7 @@ echo -e " Auto-renewal: Enabled (certificates renew automatically)"
echo ""
echo -e "${YELLOW}Files modified:${NC}"
echo " - dograh/nginx.conf (updated with domain name)"
echo " - dograh/.env (BACKEND_API_ENDPOINT and TURN_HOST updated)"
echo " - dograh/certs/local.crt (SSL certificate)"
echo " - dograh/certs/local.key (SSL private key)"
echo " - /etc/letsencrypt/renewal-hooks/deploy/dograh-reload.sh (renewal hook)"