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Add tests for single label binary pytorch models
Signed-off-by: abigailt <abigailt@il.ibm.com>
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abigailt
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commit
a8ec87f922
2 changed files with 170 additions and 42 deletions
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@ -12,10 +12,10 @@ from art.utils import load_nursery
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from apt.utils import dataset_utils
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class pytorch_model(nn.Module):
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class PytorchModel(nn.Module):
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def __init__(self, num_classes, num_features):
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super(pytorch_model, self).__init__()
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super(PytorchModel, self).__init__()
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self.fc1 = nn.Sequential(
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nn.Linear(num_features, 1024),
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@ -44,6 +44,76 @@ class pytorch_model(nn.Module):
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return self.classifier(out)
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class PytorchModelBinary(nn.Module):
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def __init__(self, num_features):
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super(PytorchModelBinary, self).__init__()
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self.fc2 = nn.Sequential(
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nn.Linear(num_features, 256),
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nn.Tanh(), )
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self.fc3 = nn.Sequential(
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nn.Linear(256, 128),
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nn.Tanh(), )
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self.fc4 = nn.Sequential(
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nn.Linear(128, 1),
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nn.Tanh(),
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)
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def forward(self, x):
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out = self.fc2(x)
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out = self.fc3(out)
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return self.fc4(out)
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class PytorchModelBinarySigmoid(nn.Module):
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def __init__(self, num_features):
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super(PytorchModelBinarySigmoid, self).__init__()
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self.fc2 = nn.Sequential(
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nn.Linear(num_features, 256),
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nn.Tanh(), )
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self.fc3 = nn.Sequential(
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nn.Linear(256, 128),
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nn.Tanh(), )
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self.fc4 = nn.Sequential(
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nn.Linear(128, 1),
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nn.Tanh(),
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)
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self.classifier = nn.Sigmoid()
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def forward(self, x):
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out = self.fc2(x)
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out = self.fc3(out)
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out = self.fc4(out)
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return self.classifier(out)
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class FocalLoss(nn.Module):
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def __init__(self, gamma=2, alpha=0.5):
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super(FocalLoss, self).__init__()
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self.gamma = gamma
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self.alpha = alpha
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def forward(self, input, target):
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bce_loss = functional.binary_cross_entropy_with_logits(input, target, reduction='none')
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p = sigmoid(input)
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p = where(target >= 0.5, p, 1-p)
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modulating_factor = (1 - p)**self.gamma
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alpha = self.alpha * target + (1 - self.alpha) * (1 - target)
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focal_loss = alpha * modulating_factor * bce_loss
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return focal_loss.mean()
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def test_pytorch_nursery_state_dict():
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(x_train, y_train), (x_test, y_test), _, _ = load_nursery(test_set=0.5)
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# reduce size of training set to make attack slightly better
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@ -53,7 +123,7 @@ def test_pytorch_nursery_state_dict():
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x_test = x_test[:train_set_size]
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y_test = y_test[:train_set_size]
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inner_model = pytorch_model(4, 24)
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inner_model = PytorchModel(4, 24)
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criterion = nn.CrossEntropyLoss()
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optimizer = optim.Adam(inner_model.parameters(), lr=0.01)
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@ -85,28 +155,102 @@ def test_pytorch_nursery_save_entire_model():
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x_test = x_test[:train_set_size]
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y_test = y_test[:train_set_size]
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model = pytorch_model(4, 24)
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inner_model = PytorchModel(4, 24)
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# model = torch.nn.DataParallel(model)
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criterion = nn.CrossEntropyLoss()
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optimizer = optim.Adam(model.parameters(), lr=0.01)
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optimizer = optim.Adam(inner_model.parameters(), lr=0.01)
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art_model = PyTorchClassifier(model=model,
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model = PyTorchClassifier(model=inner_model,
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output_type=ModelOutputType.CLASSIFIER_SINGLE_OUTPUT_CLASS_LOGITS,
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loss=criterion,
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optimizer=optimizer,
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input_shape=(24,),
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nb_classes=4)
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art_model.fit(PytorchData(x_train.astype(np.float32), y_train), save_entire_model=True, nb_epochs=10)
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model.fit(PytorchData(x_train.astype(np.float32), y_train), save_entire_model=True, nb_epochs=10)
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score = art_model.score(PytorchData(x_test.astype(np.float32), y_test))
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score = model.score(PytorchData(x_test.astype(np.float32), y_test))
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print('Base model accuracy: ', score)
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assert (0 <= score <= 1)
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art_model.load_best_model_checkpoint()
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score = art_model.score(PytorchData(x_test.astype(np.float32), y_test), apply_non_linearity=expit)
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model.load_best_model_checkpoint()
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score = model.score(PytorchData(x_test.astype(np.float32), y_test), apply_non_linearity=expit)
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print('best model accuracy: ', score)
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assert (0 <= score <= 1)
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def test_pytorch_predictions_single_label_binary():
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x = np.array([[23, 165, 70, 10],
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[45, 158, 67, 11],
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[56, 123, 65, 58],
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[67, 154, 90, 12],
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[45, 149, 67, 56],
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[42, 166, 58, 50],
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[73, 172, 68, 10],
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[94, 168, 69, 11],
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[69, 175, 80, 61],
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[24, 181, 95, 10],
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[18, 190, 102, 53],
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[22, 161, 95, 10],
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[24, 181, 103, 10],
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[28, 184, 108, 10]])
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x = from_numpy(x)
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y = np.array([1, 1, 0, 1, 0, 0, 1, 1, 0, 1, 0, 1, 1, 1])
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y = from_numpy(y)
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data = PytorchData(x, y)
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inner_model = PytorchModelBinary(4)
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criterion = nn.BCEWithLogitsLoss()
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optimizer = optim.Adam(inner_model.parameters(), lr=0.01)
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model = PyTorchClassifier(model=inner_model, output_type=ModelOutputType.CLASSIFIER_SINGLE_OUTPUT_BINARY_LOGITS,
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loss=criterion,
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optimizer=optimizer, input_shape=(4,),
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nb_classes=2)
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model.fit(data, save_entire_model=False, nb_epochs=1)
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pred = model.predict(data)
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assert (pred.shape[0] == x.shape[0])
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score = model.score(data)
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assert (0 < score <= 1.0)
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def test_pytorch_predictions_single_label_binary_prob():
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x = np.array([[23, 165, 70, 10],
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[45, 158, 67, 11],
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[56, 123, 65, 58],
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[67, 154, 90, 12],
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[45, 149, 67, 56],
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[42, 166, 58, 50],
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[73, 172, 68, 10],
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[94, 168, 69, 11],
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[69, 175, 80, 61],
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[24, 181, 95, 10],
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[18, 190, 102, 53],
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[22, 161, 95, 10],
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[24, 181, 103, 10],
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[28, 184, 108, 10]])
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x = from_numpy(x)
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y = np.array([1, 1, 0, 1, 0, 0, 1, 1, 0, 1, 0, 1, 1, 1])
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y = from_numpy(y)
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data = PytorchData(x, y)
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inner_model = PytorchModelBinarySigmoid(4)
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criterion = nn.BCELoss()
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optimizer = optim.Adam(inner_model.parameters(), lr=0.01)
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model = PyTorchClassifier(model=inner_model,
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output_type=ModelOutputType.CLASSIFIER_SINGLE_OUTPUT_BINARY_PROBABILITIES,
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loss=criterion,
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optimizer=optimizer, input_shape=(4,),
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nb_classes=2)
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model.fit(data, save_entire_model=False, nb_epochs=1)
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pred = model.predict(data)
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assert (pred.shape[0] == x.shape[0])
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score = model.score(data)
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assert (0 < score <= 1.0)
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def test_pytorch_predictions_multi_label_cat():
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# This kind of model requires special training and will not be supported using the 'fit' method.
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class multi_label_cat_model(nn.Module):
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@ -136,9 +280,9 @@ def test_pytorch_predictions_multi_label_cat():
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y_test = np.stack([y_test, y_test], axis=1)
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test = PytorchData(x_test.astype(np.float32), y_test.astype(np.float32))
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model = multi_label_cat_model(num_classes, 4)
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inner_model = multi_label_cat_model(num_classes, 4)
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criterion = nn.CrossEntropyLoss()
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optimizer = optim.Adam(model.parameters(), lr=0.01)
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optimizer = optim.Adam(inner_model.parameters(), lr=0.01)
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# train model
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train_dataset = TensorDataset(from_numpy(x_train.astype(np.float32)), from_numpy(y_train.astype(np.float32)))
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@ -151,7 +295,7 @@ def test_pytorch_predictions_multi_label_cat():
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optimizer.zero_grad()
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# Perform prediction
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model_outputs = model(inputs)
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model_outputs = inner_model(inputs)
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# Form the loss function
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loss = 0
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@ -163,17 +307,17 @@ def test_pytorch_predictions_multi_label_cat():
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optimizer.step()
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art_model = PyTorchClassifier(model=model,
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model = PyTorchClassifier(model=inner_model,
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output_type=ModelOutputType.CLASSIFIER_MULTI_OUTPUT_CLASS_LOGITS,
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loss=criterion,
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optimizer=optimizer,
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input_shape=(24,),
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nb_classes=3)
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pred = art_model.predict(test)
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pred = model.predict(test)
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assert (pred.shape[0] == x_test.shape[0])
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score = art_model.score(test, apply_non_linearity=expit)
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score = model.score(test, apply_non_linearity=expit)
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assert (0 < score <= 1.0)
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@ -190,25 +334,6 @@ def test_pytorch_predictions_multi_label_binary():
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def forward(self, x):
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return self.classifier1(self.fc1(x))
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# missing sigmoid on each output
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class FocalLoss(nn.Module):
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def __init__(self, gamma=2, alpha=0.5):
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super(FocalLoss, self).__init__()
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self.gamma = gamma
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self.alpha = alpha
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def forward(self, input, target):
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bce_loss = functional.binary_cross_entropy_with_logits(input, target, reduction='none')
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p = sigmoid(input)
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p = where(target >= 0.5, p, 1-p)
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modulating_factor = (1 - p)**self.gamma
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alpha = self.alpha * target + (1 - self.alpha) * (1 - target)
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focal_loss = alpha * modulating_factor * bce_loss
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return focal_loss.mean()
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(x_train, y_train), (x_test, y_test) = dataset_utils.get_iris_dataset_np()
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@ -219,20 +344,20 @@ def test_pytorch_predictions_multi_label_binary():
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y_test[y_test > 1] = 1
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test = PytorchData(x_test.astype(np.float32), y_test)
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model = multi_label_binary_model(3, 4)
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inner_model = multi_label_binary_model(3, 4)
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criterion = FocalLoss()
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optimizer = optim.RMSprop(model.parameters(), lr=0.01)
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optimizer = optim.RMSprop(inner_model.parameters(), lr=0.01)
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art_model = PyTorchClassifier(model=model,
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model = PyTorchClassifier(model=inner_model,
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output_type=ModelOutputType.CLASSIFIER_MULTI_OUTPUT_BINARY_LOGITS,
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loss=criterion,
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optimizer=optimizer,
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input_shape=(24,),
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nb_classes=3)
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art_model.fit(PytorchData(x_train.astype(np.float32), y_train.astype(np.float32)), save_entire_model=False,
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model.fit(PytorchData(x_train.astype(np.float32), y_train.astype(np.float32)), save_entire_model=False,
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nb_epochs=10)
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pred = art_model.predict(test)
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pred = model.predict(test)
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assert (pred.shape[0] == x_test.shape[0])
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score = art_model.score(test, apply_non_linearity=expit)
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score = model.score(test, apply_non_linearity=expit)
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assert (score == 1.0)
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