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No default encoder, if none provided data is supplied to the model as is. Fix data type of representative values. Fix and add more tests.
Signed-off-by: abigailt <abigailt@il.ibm.com>
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parent
ef406cea62
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30cb705062
2 changed files with 134 additions and 84 deletions
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@ -57,7 +57,7 @@ class GeneralizeToRepresentative(BaseEstimator, MetaEstimatorMixin, TransformerM
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:param categorical_features: The list of categorical features (if supplied, these featurtes will be one-hot
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encoded before using them to train the decision tree model).
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:param encoder: Optional encoder for encoding data before feeding it into the estimator (e.g., for categorical
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features)
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features). If not provided, the data will be fed as is directly to the estimator.
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:type encoder: sklearn OrdinalEncoder or OneHotEncoder
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:type categorical_features: list of strings, optional
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:param features_to_minimize: The features to be minimized.
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@ -256,7 +256,6 @@ class GeneralizeToRepresentative(BaseEstimator, MetaEstimatorMixin, TransformerM
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# Going to fit
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# (currently not dealing with option to fit with only X and y and no estimator)
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if self.estimator and dataset and dataset.get_samples() is not None and dataset.get_labels() is not None:
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dtype = dataset.get_samples().dtype
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x = pd.DataFrame(dataset.get_samples(), columns=self._features)
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if not self.features_to_minimize:
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self.features_to_minimize = self._features
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@ -293,21 +292,6 @@ class GeneralizeToRepresentative(BaseEstimator, MetaEstimatorMixin, TransformerM
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# collect feature data (such as min, max)
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self._feature_data = self._get_feature_data(x)
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# default encoder in case none provided
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if self.encoder is None:
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numeric_features = [f for f in self._features if f not in self.categorical_features]
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numeric_transformer = Pipeline(
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steps=[('imputer', SimpleImputer(strategy='constant', fill_value=0))]
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)
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categorical_transformer = OneHotEncoder(handle_unknown="ignore", sparse=False)
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self.encoder = ColumnTransformer(
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transformers=[
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("num", numeric_transformer, numeric_features),
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("cat", categorical_transformer, self.categorical_features),
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]
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)
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self.encoder.fit(x)
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self.cells = []
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self._categorical_values = {}
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@ -341,7 +325,10 @@ class GeneralizeToRepresentative(BaseEstimator, MetaEstimatorMixin, TransformerM
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generalized = self._generalize_from_generalizations(x_test, self.generalizations)
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# check accuracy
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accuracy = self.estimator.score(ArrayDataset(self.encoder.transform(generalized).astype(dtype), y_test))
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if self.encoder:
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accuracy = self.estimator.score(ArrayDataset(self.encoder.transform(generalized), y_test))
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else:
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accuracy = self.estimator.score(ArrayDataset(generalized, y_test))
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print('Initial accuracy of model on generalized data, relative to original model predictions '
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'(base generalization derived from tree, before improvements): %f' % accuracy)
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@ -371,8 +358,10 @@ class GeneralizeToRepresentative(BaseEstimator, MetaEstimatorMixin, TransformerM
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else:
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generalized = self._generalize_from_generalizations(x_test, self.generalizations)
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accuracy = self.estimator.score(ArrayDataset(self.encoder.transform(generalized).astype(dtype),
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y_test))
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if self.encoder:
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accuracy = self.estimator.score(ArrayDataset(self.encoder.transform(generalized), y_test))
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else:
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accuracy = self.estimator.score(ArrayDataset(generalized, y_test))
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# if accuracy passed threshold roll back to previous iteration generalizations
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if accuracy < self.target_accuracy:
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self.cells = cells_previous_iter
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@ -401,8 +390,11 @@ class GeneralizeToRepresentative(BaseEstimator, MetaEstimatorMixin, TransformerM
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self._cells_by_id)
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else:
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generalized = self._generalize_from_generalizations(x_test, self.generalizations)
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accuracy = self.estimator.score(ArrayDataset(self.encoder.transform(generalized).astype(dtype),
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y_test))
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if self.encoder:
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accuracy = self.estimator.score(ArrayDataset(self.encoder.transform(generalized), y_test))
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else:
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accuracy = self.estimator.score(ArrayDataset(generalized, y_test))
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print('Removed feature: %s, new relative accuracy: %f' % (removed_feature, accuracy))
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# self._cells currently holds the chosen generalization based on target accuracy
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@ -893,7 +885,11 @@ class GeneralizeToRepresentative(BaseEstimator, MetaEstimatorMixin, TransformerM
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def _generalize_indexes(self, original_data, cells, all_indexes):
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# prepared data include one hot encoded categorical data + QI
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representatives = pd.DataFrame(columns=self._features) # empty except for columns
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dtypes = original_data.dtypes.to_dict()
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new_dtypes = {}
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for t in dtypes.keys():
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new_dtypes[t] = pd.Series(dtype=dtypes[t].name)
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representatives = pd.DataFrame(new_dtypes) # empty except for columns
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original_data_generalized = pd.DataFrame(original_data, columns=self._features, copy=True)
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# iterate over cells (leaves in decision tree)
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@ -1000,8 +996,11 @@ class GeneralizeToRepresentative(BaseEstimator, MetaEstimatorMixin, TransformerM
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GeneralizeToRepresentative._remove_feature_from_cells(new_cells, cells_by_id, feature)
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generalized = self._generalize_from_tree(original_data, prepared_data, nodes, new_cells,
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cells_by_id)
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accuracy_gain = self.estimator.score(ArrayDataset(self.encoder.transform(generalized),
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labels)) - current_accuracy
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if self.encoder:
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accuracy_gain = self.estimator.score(ArrayDataset(self.encoder.transform(generalized),
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labels)) - current_accuracy
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else:
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accuracy_gain = self.estimator.score(ArrayDataset(generalized, labels)) - current_accuracy
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if accuracy_gain < 0:
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accuracy_gain = 0
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if accuracy_gain != 0:
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@ -1027,8 +1026,11 @@ class GeneralizeToRepresentative(BaseEstimator, MetaEstimatorMixin, TransformerM
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GeneralizeToRepresentative._remove_feature_from_cells(new_cells, cells_by_id, feature)
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generalized = self._generalize_from_tree(original_data, prepared_data, nodes, new_cells,
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cells_by_id)
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accuracy_gain = self.estimator.score(ArrayDataset(self.encoder.transform(generalized),
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labels)) - current_accuracy
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if self.encoder:
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accuracy_gain = self.estimator.score(ArrayDataset(self.encoder.transform(generalized),
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labels)) - current_accuracy
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else:
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accuracy_gain = self.estimator.score(ArrayDataset(generalized, labels)) - current_accuracy
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if accuracy_gain < 0:
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accuracy_gain = 0
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