file_intent (FileIntentMiddleware) and flatten_system
(FlattenSystemMessageMiddleware) were only ever instantiated in the
single-agent chat_deepagent stack, which was removed in 14bbea085. They
have no production consumer in multi_agent_chat. Delete both modules and
their unit tests.
Also drop the vestigial KnowledgeBaseSearchMiddleware alias (= the live
KnowledgePriorityMiddleware); its tests now target the real class so the
behavior coverage is preserved. Trim the three barrel/__all__ entries and
strip the now-dead class names from comments.