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514 lines
24 KiB
Python
514 lines
24 KiB
Python
# Copyright (c) 2012-2014, GPy authors (see AUTHORS.txt).
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# Licensed under the BSD 3-clause license (see LICENSE.txt)
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import numpy as np
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from ...util.linalg import jitchol, DSYR, dtrtrs, dtrtri, pdinv, dpotrs, tdot, symmetrify
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from paramz import ObsAr
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from . import ExactGaussianInference, VarDTC
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from ...util import diag
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from .posterior import PosteriorEP as Posterior
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from ...likelihoods import Gaussian
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from . import LatentFunctionInference
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log_2_pi = np.log(2*np.pi)
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#Four wrapper classes to help modularisation of different EP versions
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class marginalMoments(object):
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def __init__(self, num_data):
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self.Z_hat = np.empty(num_data,dtype=np.float64)
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self.mu_hat = np.empty(num_data,dtype=np.float64)
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self.sigma2_hat = np.empty(num_data,dtype=np.float64)
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class cavityParams(object):
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def __init__(self, num_data):
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self.tau = np.empty(num_data,dtype=np.float64)
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self.v = np.empty(num_data,dtype=np.float64)
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def _update_i(self, eta, ga_approx, post_params, i):
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self.tau[i] = 1./post_params.Sigma_diag[i] - eta*ga_approx.tau[i]
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self.v[i] = post_params.mu[i]/post_params.Sigma_diag[i] - eta*ga_approx.v[i]
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def to_dict(self):
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return {"tau": self.tau.tolist(), "v": self.v.tolist()}
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@staticmethod
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def from_dict(input_dict):
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c = cavityParams(len(input_dict["tau"]))
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c.tau = np.array(input_dict["tau"])
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c.v = np.array(input_dict["v"])
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return c
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class gaussianApproximation(object):
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def __init__(self, v, tau):
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self.tau = tau
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self.v = v
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def _update_i(self, eta, delta, post_params, marg_moments, i):
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#Site parameters update
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delta_tau = delta/eta*(1./marg_moments.sigma2_hat[i] - 1./post_params.Sigma_diag[i])
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delta_v = delta/eta*(marg_moments.mu_hat[i]/marg_moments.sigma2_hat[i] - post_params.mu[i]/post_params.Sigma_diag[i])
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tau_tilde_prev = self.tau[i]
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self.tau[i] += delta_tau
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# Enforce positivity of tau_tilde. Even though this is guaranteed for logconcave sites, it is still possible
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# to get negative values due to numerical errors. Moreover, the value of tau_tilde should be positive in order to
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# update the marginal likelihood without runnint into instabilities issues.
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if self.tau[i] < np.finfo(float).eps:
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self.tau[i] = np.finfo(float).eps
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delta_tau = self.tau[i] - tau_tilde_prev
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self.v[i] += delta_v
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return (delta_tau, delta_v)
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def to_dict(self):
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return {"tau": self.tau.tolist(), "v": self.v.tolist()}
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@staticmethod
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def from_dict(input_dict):
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return gaussianApproximation(np.array(input_dict["v"]), np.array(input_dict["tau"]))
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class posteriorParamsBase(object):
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def __init__(self, mu, Sigma_diag):
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self.mu = mu
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self.Sigma_diag = Sigma_diag
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def _update_rank1(self, *arg):
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pass
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def _recompute(self, *arg):
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pass
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class posteriorParams(posteriorParamsBase):
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def __init__(self, mu, Sigma, L=None):
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self.Sigma = Sigma
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self.L = L
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Sigma_diag = np.diag(self.Sigma)
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super(posteriorParams, self).__init__(mu, Sigma_diag)
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def _update_rank1(self, delta_tau, ga_approx, i):
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ci = delta_tau/(1.+ delta_tau*self.Sigma_diag[i])
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DSYR(self.Sigma, self.Sigma[:,i].copy(), -ci)
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self.mu = np.dot(self.Sigma, ga_approx.v)
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def to_dict(self):
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#TODO: Implement a more memory efficient variant
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if self.L is None:
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return { "mu": self.mu.tolist(), "Sigma": self.Sigma.tolist()}
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else:
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return { "mu": self.mu.tolist(), "Sigma": self.Sigma.tolist(), "L": self.L.tolist()}
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@staticmethod
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def from_dict(input_dict):
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if "L" in input_dict:
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return posteriorParams(np.array(input_dict["mu"]), np.array(input_dict["Sigma"]), np.array(input_dict["L"]))
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else:
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return posteriorParams(np.array(input_dict["mu"]), np.array(input_dict["Sigma"]))
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@staticmethod
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def _recompute(K, ga_approx):
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num_data = len(ga_approx.tau)
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tau_tilde_root = np.sqrt(ga_approx.tau)
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Sroot_tilde_K = tau_tilde_root[:,None] * K
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B = np.eye(num_data) + Sroot_tilde_K * tau_tilde_root[None,:]
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L = jitchol(B)
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V, _ = dtrtrs(L, Sroot_tilde_K, lower=1)
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Sigma = K - np.dot(V.T,V) #K - KS^(1/2)BS^(1/2)K = (K^(-1) + \Sigma^(-1))^(-1)
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mu = np.dot(Sigma,ga_approx.v)
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return posteriorParams(mu=mu, Sigma=Sigma, L=L)
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class posteriorParamsDTC(posteriorParamsBase):
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def __init__(self, mu, Sigma_diag):
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super(posteriorParamsDTC, self).__init__(mu, Sigma_diag)
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def _update_rank1(self, LLT, Kmn, delta_v, delta_tau, i):
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#DSYR(Sigma, Sigma[:,i].copy(), -delta_tau/(1.+ delta_tau*Sigma[i,i]))
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DSYR(LLT,Kmn[:,i].copy(),delta_tau)
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L = jitchol(LLT)
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V,info = dtrtrs(L,Kmn,lower=1)
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self.Sigma_diag = np.maximum(np.sum(V*V,-2), np.finfo(float).eps) #diag(K_nm (L L^\top)^(-1)) K_mn
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si = np.sum(V.T*V[:,i],-1) #(V V^\top)[:,i]
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self.mu += (delta_v-delta_tau*self.mu[i])*si
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#mu = np.dot(Sigma, v_tilde)
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@staticmethod
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def _recompute(LLT0, Kmn, ga_approx):
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LLT = LLT0 + np.dot(Kmn*ga_approx.tau[None,:],Kmn.T)
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L = jitchol(LLT)
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V, _ = dtrtrs(L,Kmn,lower=1)
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#Sigma_diag = np.sum(V*V,-2)
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#Knmv_tilde = np.dot(Kmn,v_tilde)
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#mu = np.dot(V2.T,Knmv_tilde)
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Sigma = np.dot(V.T,V)
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mu = np.dot(Sigma, ga_approx.v)
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Sigma_diag = np.diag(Sigma).copy()
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return posteriorParamsDTC(mu, Sigma_diag), LLT
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class EPBase(object):
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def __init__(self, epsilon=1e-6, eta=1., delta=1., always_reset=False, max_iters=np.inf, ep_mode="alternated", parallel_updates=False, loading=False):
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"""
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The expectation-propagation algorithm.
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For nomenclature see Rasmussen & Williams 2006.
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:param epsilon: Convergence criterion, maximum squared difference allowed between mean updates to stop iterations (float)
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:type epsilon: float
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:param eta: parameter for fractional EP updates.
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:type eta: float64
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:param delta: damping EP updates factor.
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:type delta: float64
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:param always_reset: setting to always reset the approximation at the beginning of every inference call.
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:type always_reest: boolean
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:max_iters: int
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:ep_mode: string. It can be "nested" (EP is run every time the Hyperparameters change) or "alternated" (It runs EP at the beginning and then optimize the Hyperparameters).
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:parallel_updates: boolean. If true, updates of the parameters of the sites in parallel
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:loading: boolean. If True, prevents the EP parameters to change. Hack used when loading a serialized model
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"""
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super(EPBase, self).__init__()
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self.always_reset = always_reset
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self.epsilon, self.eta, self.delta, self.max_iters = epsilon, eta, delta, max_iters
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self.ep_mode = ep_mode
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self.parallel_updates = parallel_updates
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#FIXME: Hack for serialiation. If True, prevents the EP parameters to change when loading a serialized model
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self.loading = loading
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self.reset()
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def reset(self):
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self.ga_approx_old = None
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self._ep_approximation = None
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def on_optimization_start(self):
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self._ep_approximation = None
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def on_optimization_end(self):
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# TODO: update approximation in the end as well? Maybe even with a switch?
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pass
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def _stop_criteria(self, ga_approx):
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tau_diff = np.mean(np.square(ga_approx.tau-self.ga_approx_old.tau))
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v_diff = np.mean(np.square(ga_approx.v-self.ga_approx_old.v))
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return ((tau_diff < self.epsilon) and (v_diff < self.epsilon))
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def __setstate__(self, state):
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super(EPBase, self).__setstate__(state[0])
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self.epsilon, self.eta, self.delta = state[1]
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self.reset()
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def __getstate__(self):
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return [super(EPBase, self).__getstate__() , [self.epsilon, self.eta, self.delta]]
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def _to_dict(self):
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input_dict = super(EPBase, self)._to_dict()
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input_dict["epsilon"]=self.epsilon
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input_dict["eta"]=self.eta
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input_dict["delta"]=self.delta
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input_dict["always_reset"]=self.always_reset
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input_dict["max_iters"]=self.max_iters
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input_dict["ep_mode"]=self.ep_mode
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input_dict["parallel_updates"]=self.parallel_updates
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input_dict["loading"]=True
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return input_dict
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class EP(EPBase, ExactGaussianInference):
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def inference(self, kern, X, likelihood, Y, mean_function=None, Y_metadata=None, precision=None, K=None):
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if self.always_reset and not self.loading:
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self.reset()
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num_data, output_dim = Y.shape
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assert output_dim == 1, "ep in 1D only (for now!)"
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if K is None:
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K = kern.K(X)
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if self.ep_mode=="nested" and not self.loading:
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#Force EP at each step of the optimization
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self._ep_approximation = None
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post_params, ga_approx, cav_params, log_Z_tilde = self._ep_approximation = self.expectation_propagation(K, Y, likelihood, Y_metadata)
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elif self.ep_mode=="alternated" or self.loading:
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if getattr(self, '_ep_approximation', None) is None:
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#if we don't yet have the results of runnign EP, run EP and store the computed factors in self._ep_approximation
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post_params, ga_approx, cav_params, log_Z_tilde = self._ep_approximation = self.expectation_propagation(K, Y, likelihood, Y_metadata)
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else:
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#if we've already run EP, just use the existing approximation stored in self._ep_approximation
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post_params, ga_approx, cav_params, log_Z_tilde = self._ep_approximation
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else:
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raise ValueError("ep_mode value not valid")
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self.loading = False
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return self._inference(Y, K, ga_approx, cav_params, likelihood, Y_metadata=Y_metadata, Z_tilde=log_Z_tilde)
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def expectation_propagation(self, K, Y, likelihood, Y_metadata):
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num_data, data_dim = Y.shape
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assert data_dim == 1, "This EP methods only works for 1D outputs"
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# Makes computing the sign quicker if we work with numpy arrays rather
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# than ObsArrays
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Y = Y.values.copy()
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#Initial values - Marginal moments, cavity params, gaussian approximation params and posterior params
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marg_moments = marginalMoments(num_data)
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cav_params = cavityParams(num_data)
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ga_approx, post_params = self._init_approximations(K, num_data)
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#Approximation
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stop = False
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iterations = 0
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while not stop and (iterations < self.max_iters):
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self._local_updates(num_data, cav_params, post_params, marg_moments, ga_approx, likelihood, Y, Y_metadata)
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#(re) compute Sigma and mu using full Cholesky decompy
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post_params = posteriorParams._recompute(K, ga_approx)
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#monitor convergence
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if iterations > 0:
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stop = self._stop_criteria(ga_approx)
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self.ga_approx_old = gaussianApproximation(ga_approx.v.copy(), ga_approx.tau.copy())
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iterations += 1
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# Z_tilde after removing the terms that can lead to infinite terms due to tau_tilde close to zero.
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# This terms cancel with the coreresponding terms in the marginal loglikelihood
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log_Z_tilde = self._log_Z_tilde(marg_moments, ga_approx, cav_params)
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# - 0.5*np.log(tau_tilde) + 0.5*(v_tilde*v_tilde*1./tau_tilde)
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return (post_params, ga_approx, cav_params, log_Z_tilde)
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def _init_approximations(self, K, num_data):
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#initial values - Gaussian factors
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#Initial values - Posterior distribution parameters: q(f|X,Y) = N(f|mu,Sigma)
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if self.ga_approx_old is None:
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v_tilde, tau_tilde = np.zeros((2, num_data))
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ga_approx = gaussianApproximation(v_tilde, tau_tilde)
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Sigma = K.copy()
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diag.add(Sigma, 1e-7)
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mu = np.zeros(num_data)
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post_params = posteriorParams(mu, Sigma)
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else:
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assert self.ga_approx_old.v.size == num_data, "data size mis-match: did you change the data? try resetting!"
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ga_approx = gaussianApproximation(self.ga_approx_old.v, self.ga_approx_old.tau)
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post_params = posteriorParams._recompute(K, ga_approx)
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diag.add(post_params.Sigma, 1e-7)
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# TODO: Check the log-marginal under both conditions and choose the best one
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return (ga_approx, post_params)
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def _local_updates(self, num_data, cav_params, post_params, marg_moments, ga_approx, likelihood, Y, Y_metadata, update_order=None):
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if update_order is None:
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update_order = np.random.permutation(num_data)
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for i in update_order:
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#Cavity distribution parameters
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cav_params._update_i(self.eta, ga_approx, post_params, i)
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if Y_metadata is not None:
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# Pick out the relavent metadata for Yi
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Y_metadata_i = {}
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for key in Y_metadata.keys():
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Y_metadata_i[key] = Y_metadata[key][i, :]
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else:
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Y_metadata_i = None
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#Marginal moments
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marg_moments.Z_hat[i], marg_moments.mu_hat[i], marg_moments.sigma2_hat[i] = likelihood.moments_match_ep(Y[i], cav_params.tau[i], cav_params.v[i], Y_metadata_i=Y_metadata_i)
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#Site parameters update
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delta_tau, delta_v = ga_approx._update_i(self.eta, self.delta, post_params, marg_moments, i)
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if self.parallel_updates == False:
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post_params._update_rank1(delta_tau, ga_approx, i)
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def _log_Z_tilde(self, marg_moments, ga_approx, cav_params):
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return np.sum((np.log(marg_moments.Z_hat) + 0.5*np.log(2*np.pi) + 0.5*np.log(1+ga_approx.tau/cav_params.tau) - 0.5 * ((ga_approx.v)**2 * 1./(cav_params.tau + ga_approx.tau))
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+ 0.5*(cav_params.v * ( ( (ga_approx.tau/cav_params.tau) * cav_params.v - 2.0 * ga_approx.v ) * 1./(cav_params.tau + ga_approx.tau)))))
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def _ep_marginal(self, K, ga_approx, Z_tilde):
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post_params = posteriorParams._recompute(K, ga_approx)
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# Gaussian log marginal excluding terms that can go to infinity due to arbitrarily small tau_tilde.
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# These terms cancel out with the terms excluded from Z_tilde
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B_logdet = np.sum(2.0*np.log(np.diag(post_params.L)))
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log_marginal = 0.5*(-len(ga_approx.tau) * log_2_pi - B_logdet + np.sum(ga_approx.v * np.dot(post_params.Sigma,ga_approx.v)))
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log_marginal += Z_tilde
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return log_marginal, post_params
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def _inference(self, Y, K, ga_approx, cav_params, likelihood, Z_tilde, Y_metadata=None):
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log_marginal, post_params = self._ep_marginal(K, ga_approx, Z_tilde)
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tau_tilde_root = np.sqrt(ga_approx.tau)
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Sroot_tilde_K = tau_tilde_root[:,None] * K
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aux_alpha , _ = dpotrs(post_params.L, np.dot(Sroot_tilde_K, ga_approx.v), lower=1)
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alpha = (ga_approx.v - tau_tilde_root * aux_alpha)[:,None] #(K + Sigma^(\tilde))^(-1) /mu^(/tilde)
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LWi, _ = dtrtrs(post_params.L, np.diag(tau_tilde_root), lower=1)
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Wi = np.dot(LWi.T,LWi)
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symmetrify(Wi) #(K + Sigma^(\tilde))^(-1)
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dL_dK = 0.5 * (tdot(alpha) - Wi)
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dL_dthetaL = likelihood.ep_gradients(Y, cav_params.tau, cav_params.v, np.diag(dL_dK), Y_metadata=Y_metadata, quad_mode='gh')
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return Posterior(woodbury_inv=Wi, woodbury_vector=alpha, K=K), log_marginal, {'dL_dK':dL_dK, 'dL_dthetaL':dL_dthetaL, 'dL_dm':alpha}
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def to_dict(self):
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input_dict = super(EP, self)._to_dict()
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input_dict["class"] = "GPy.inference.latent_function_inference.expectation_propagation.EP"
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if self.ga_approx_old is not None:
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input_dict["ga_approx_old"] = self.ga_approx_old.to_dict()
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if self._ep_approximation is not None:
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input_dict["_ep_approximation"] = {}
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input_dict["_ep_approximation"]["post_params"] = self._ep_approximation[0].to_dict()
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input_dict["_ep_approximation"]["ga_approx"] = self._ep_approximation[1].to_dict()
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input_dict["_ep_approximation"]["cav_params"] = self._ep_approximation[2].to_dict()
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input_dict["_ep_approximation"]["log_Z_tilde"] = self._ep_approximation[3].tolist()
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return input_dict
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@staticmethod
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def _from_dict(inference_class, input_dict):
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ga_approx_old = input_dict.pop('ga_approx_old', None)
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if ga_approx_old is not None:
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ga_approx_old = gaussianApproximation.from_dict(ga_approx_old)
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_ep_approximation_dict = input_dict.pop('_ep_approximation', None)
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_ep_approximation = []
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if _ep_approximation is not None:
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_ep_approximation.append(posteriorParams.from_dict(_ep_approximation_dict["post_params"]))
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_ep_approximation.append(gaussianApproximation.from_dict(_ep_approximation_dict["ga_approx"]))
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_ep_approximation.append(cavityParams.from_dict(_ep_approximation_dict["cav_params"]))
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_ep_approximation.append(np.array(_ep_approximation_dict["log_Z_tilde"]))
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ee = EP(**input_dict)
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ee.ga_approx_old = ga_approx_old
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ee._ep_approximation = _ep_approximation
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return ee
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class EPDTC(EPBase, VarDTC):
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def inference(self, kern, X, Z, likelihood, Y, mean_function=None, Y_metadata=None, Lm=None, dL_dKmm=None, psi0=None, psi1=None, psi2=None):
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if self.always_reset:
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self.reset()
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|
|
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num_data, output_dim = Y.shape
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assert output_dim == 1, "ep in 1D only (for now!)"
|
|
|
|
if Lm is None:
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|
Kmm = kern.K(Z)
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Lm = jitchol(Kmm)
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|
|
|
if psi1 is None:
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|
try:
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Kmn = kern.K(Z, X)
|
|
except TypeError:
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|
Kmn = kern.psi1(Z, X).T
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|
else:
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Kmn = psi1.T
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|
|
|
if self.ep_mode=="nested":
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#Force EP at each step of the optimization
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|
self._ep_approximation = None
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|
post_params, ga_approx, log_Z_tilde = self._ep_approximation = self.expectation_propagation(Kmm, Kmn, Y, likelihood, Y_metadata)
|
|
elif self.ep_mode=="alternated":
|
|
if getattr(self, '_ep_approximation', None) is None:
|
|
#if we don't yet have the results of runnign EP, run EP and store the computed factors in self._ep_approximation
|
|
post_params, ga_approx, log_Z_tilde = self._ep_approximation = self.expectation_propagation(Kmm, Kmn, Y, likelihood, Y_metadata)
|
|
else:
|
|
#if we've already run EP, just use the existing approximation stored in self._ep_approximation
|
|
post_params, ga_approx, log_Z_tilde = self._ep_approximation
|
|
else:
|
|
raise ValueError("ep_mode value not valid")
|
|
|
|
mu_tilde = ga_approx.v / ga_approx.tau.astype(float)
|
|
|
|
return super(EPDTC, self).inference(kern, X, Z, likelihood, ObsAr(mu_tilde[:,None]),
|
|
mean_function=mean_function,
|
|
Y_metadata=Y_metadata,
|
|
precision=ga_approx.tau,
|
|
Lm=Lm, dL_dKmm=dL_dKmm,
|
|
psi0=psi0, psi1=psi1, psi2=psi2, Z_tilde=log_Z_tilde)
|
|
|
|
def expectation_propagation(self, Kmm, Kmn, Y, likelihood, Y_metadata):
|
|
|
|
num_data, output_dim = Y.shape
|
|
assert output_dim == 1, "This EP methods only works for 1D outputs"
|
|
|
|
# Makes computing the sign quicker if we work with numpy arrays rather
|
|
# than ObsArrays
|
|
Y = Y.values.copy()
|
|
|
|
#Initial values - Marginal moments, cavity params, gaussian approximation params and posterior params
|
|
marg_moments = marginalMoments(num_data)
|
|
cav_params = cavityParams(num_data)
|
|
ga_approx, post_params, LLT0, LLT = self._init_approximations(Kmm, Kmn, num_data)
|
|
|
|
#Approximation
|
|
stop = False
|
|
iterations = 0
|
|
while not stop and (iterations < self.max_iters):
|
|
self._local_updates(num_data, LLT0, LLT, Kmn, cav_params, post_params, marg_moments, ga_approx, likelihood, Y, Y_metadata)
|
|
#(re) compute Sigma, Sigma_diag and mu using full Cholesky decompy
|
|
post_params, LLT = posteriorParamsDTC._recompute(LLT0, Kmn, ga_approx)
|
|
post_params.Sigma_diag = np.maximum(post_params.Sigma_diag, np.finfo(float).eps)
|
|
|
|
#monitor convergence
|
|
if iterations > 0:
|
|
stop = self._stop_criteria(ga_approx)
|
|
self.ga_approx_old = gaussianApproximation(ga_approx.v.copy(), ga_approx.tau.copy())
|
|
iterations += 1
|
|
|
|
log_Z_tilde = self._log_Z_tilde(marg_moments, ga_approx, cav_params)
|
|
|
|
return post_params, ga_approx, log_Z_tilde
|
|
|
|
def _log_Z_tilde(self, marg_moments, ga_approx, cav_params):
|
|
mu_tilde = ga_approx.v/ga_approx.tau
|
|
mu_cav = cav_params.v/cav_params.tau
|
|
sigma2_sigma2tilde = 1./cav_params.tau + 1./ga_approx.tau
|
|
|
|
return np.sum((np.log(marg_moments.Z_hat) + 0.5*np.log(2*np.pi) + 0.5*np.log(sigma2_sigma2tilde)
|
|
+ 0.5*((mu_cav - mu_tilde)**2) / (sigma2_sigma2tilde)))
|
|
|
|
def _init_approximations(self, Kmm, Kmn, num_data):
|
|
#initial values - Gaussian factors
|
|
#Initial values - Posterior distribution parameters: q(f|X,Y) = N(f|mu,Sigma)
|
|
LLT0 = Kmm.copy()
|
|
Lm = jitchol(LLT0) #K_m = L_m L_m^\top
|
|
Vm,info = dtrtrs(Lm, Kmn,lower=1)
|
|
# Lmi = dtrtri(Lm)
|
|
# Kmmi = np.dot(Lmi.T,Lmi)
|
|
# KmmiKmn = np.dot(Kmmi,Kmn)
|
|
# Qnn_diag = np.sum(Kmn*KmmiKmn,-2)
|
|
Qnn_diag = np.sum(Vm*Vm,-2) #diag(Knm Kmm^(-1) Kmn)
|
|
#diag.add(LLT0, 1e-8)
|
|
if self.ga_approx_old is None:
|
|
#Initial values - Posterior distribution parameters: q(f|X,Y) = N(f|mu,Sigma)
|
|
LLT = LLT0.copy() #Sigma = K.copy()
|
|
mu = np.zeros(num_data)
|
|
Sigma_diag = Qnn_diag.copy() + 1e-8
|
|
v_tilde, tau_tilde = np.zeros((2, num_data))
|
|
ga_approx = gaussianApproximation(v_tilde, tau_tilde)
|
|
post_params = posteriorParamsDTC(mu, Sigma_diag)
|
|
|
|
else:
|
|
assert self.ga_approx_old.v.size == num_data, "data size mis-match: did you change the data? try resetting!"
|
|
ga_approx = gaussianApproximation(self.ga_approx_old.v, self.ga_approx_old.tau)
|
|
post_params, LLT = posteriorParamsDTC._recompute(LLT0, Kmn, ga_approx)
|
|
post_params.Sigma_diag += 1e-8
|
|
|
|
# TODO: Check the log-marginal under both conditions and choose the best one
|
|
|
|
return (ga_approx, post_params, LLT0, LLT)
|
|
|
|
def _local_updates(self, num_data, LLT0, LLT, Kmn, cav_params, post_params, marg_moments, ga_approx, likelihood, Y, Y_metadata, update_order=None):
|
|
if update_order is None:
|
|
update_order = np.random.permutation(num_data)
|
|
for i in update_order:
|
|
|
|
#Cavity distribution parameters
|
|
cav_params._update_i(self.eta, ga_approx, post_params, i)
|
|
|
|
|
|
if Y_metadata is not None:
|
|
# Pick out the relavent metadata for Yi
|
|
Y_metadata_i = {}
|
|
for key in Y_metadata.keys():
|
|
Y_metadata_i[key] = Y_metadata[key][i, :]
|
|
else:
|
|
Y_metadata_i = None
|
|
|
|
#Marginal moments
|
|
marg_moments.Z_hat[i], marg_moments.mu_hat[i], marg_moments.sigma2_hat[i] = likelihood.moments_match_ep(Y[i], cav_params.tau[i], cav_params.v[i], Y_metadata_i=Y_metadata_i)
|
|
#Site parameters update
|
|
delta_tau, delta_v = ga_approx._update_i(self.eta, self.delta, post_params, marg_moments, i)
|
|
|
|
#Posterior distribution parameters update
|
|
if self.parallel_updates == False:
|
|
post_params._update_rank1(LLT, Kmn, delta_v, delta_tau, i)
|