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GPy/setup.py
KOLANICH 2c22f1e9c5
Fix the URLs in package metadata (#1005)
2023-09-21 09:48:38 -04:00

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#!/usr/bin/env python
# -*- coding: utf-8 -*-
#===============================================================================
# Copyright (c) 2012 - 2014, GPy authors (see AUTHORS.txt).
# Copyright (c) 2014, James Hensman, Max Zwiessele
# Copyright (c) 2015, Max Zwiessele
#
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#
# * Redistributions of source code must retain the above copyright notice, this
# list of conditions and the following disclaimer.
#
# * Redistributions in binary form must reproduce the above copyright notice,
# this list of conditions and the following disclaimer in the documentation
# and/or other materials provided with the distribution.
#
# * Neither the name of GPy nor the names of its
# contributors may be used to endorse or promote products derived from
# this software without specific prior written permission.
#
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
# DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
# FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
# DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
# SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
# CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
# OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
#===============================================================================
from __future__ import print_function
import os
import sys
from setuptools import setup, Extension
import codecs
try:
ModuleNotFoundError
except NameError:
ModuleNotFoundError = ImportError
def read(fname):
with codecs.open(fname, 'r', 'latin') as f:
return f.read()
def read_to_rst(fname):
try:
import pypandoc
rstname = "{}.{}".format(os.path.splitext(fname)[0], 'rst')
pypandoc.convert(read(fname), 'rst', format='md', outputfile=rstname)
with open(rstname, 'r') as f:
rststr = f.read()
return rststr
#return read(rstname)
except ImportError:
return read(fname)
desc = """
Please refer to the github homepage for detailed instructions on installation and usage.
"""
version_dummy = {}
exec(read('GPy/__version__.py'), version_dummy)
__version__ = version_dummy['__version__']
del version_dummy
#Mac OS X Clang doesn't support OpenMP at the current time.
#This detects if we are building on a Mac
def ismac():
return sys.platform[:6] == 'darwin'
if ismac():
compile_flags = [ '-O3', ]
link_args = []
else:
compile_flags = [ '-fopenmp', '-O3']
link_args = ['-lgomp' ]
try:
# So that we don't need numpy installed to determine it's a dependency.
import numpy as np
ext_mods = [Extension(name='GPy.kern.src.stationary_cython',
sources=['GPy/kern/src/stationary_cython.pyx',
'GPy/kern/src/stationary_utils.c'],
include_dirs=[np.get_include(), '.'],
extra_compile_args=compile_flags,
extra_link_args=link_args),
Extension(name='GPy.util.choleskies_cython',
sources=['GPy/util/choleskies_cython.pyx'],
include_dirs=[np.get_include(), '.'],
extra_link_args=link_args,
extra_compile_args=compile_flags),
Extension(name='GPy.util.linalg_cython',
sources=['GPy/util/linalg_cython.pyx'],
include_dirs=[np.get_include(), '.'],
extra_compile_args=compile_flags,
extra_link_args=link_args),
Extension(name='GPy.kern.src.coregionalize_cython',
sources=['GPy/kern/src/coregionalize_cython.pyx'],
include_dirs=[np.get_include(), '.'],
extra_compile_args=compile_flags,
extra_link_args=link_args),
Extension(name='GPy.models.state_space_cython',
sources=['GPy/models/state_space_cython.pyx'],
include_dirs=[np.get_include(), '.'],
extra_compile_args=compile_flags,
extra_link_args=link_args)]
except ModuleNotFoundError:
ext_mods = []
install_requirements = ['numpy>=1.7', 'six', 'paramz>=0.9.0', 'cython>=0.29']
matplotlib_version = 'matplotlib==3.3.4'
install_requirements += ['scipy>=1.3.0']
setup(name = 'GPy',
version = __version__,
author = read_to_rst('AUTHORS.txt'),
author_email = "gpy.authors@gmail.com",
description = ("The Gaussian Process Toolbox"),
long_description = desc,
license = "BSD 3-clause",
keywords = "machine-learning gaussian-processes kernels",
url = "https://sheffieldml.github.io/GPy/",
download_url='https://github.com/SheffieldML/GPy/archive/refs/heads/devel.zip',
ext_modules = ext_mods,
packages = ["GPy",
"GPy.core",
"GPy.core.parameterization",
"GPy.kern",
"GPy.kern.src",
"GPy.kern.src.psi_comp",
"GPy.models",
"GPy.inference",
"GPy.inference.optimization",
"GPy.inference.mcmc",
"GPy.inference.latent_function_inference",
"GPy.likelihoods",
"GPy.mappings",
"GPy.examples",
"GPy.testing",
"GPy.util",
"GPy.plotting",
"GPy.plotting.gpy_plot",
"GPy.plotting.matplot_dep",
"GPy.plotting.matplot_dep.controllers",
"GPy.plotting.plotly_dep",
],
package_dir={'GPy': 'GPy'},
#package_data = {'GPy': ['defaults.cfg', 'installation.cfg',
# 'util/data_resources.json',
# 'util/football_teams.json',
# 'testing/plotting_tests/baseline/*.png'
# ]},
#data_files=[('GPy/testing/plotting_tests/baseline', 'testing/plotting_tests/baseline/*.png'),
# ('GPy/testing/', 'GPy/testing/pickle_test.pickle'),
# ],
include_package_data = True,
py_modules = ['GPy.__init__'],
test_suite = 'GPy.testing',
setup_requires = ['numpy>=1.7'],
install_requires = install_requirements,
extras_require = {'docs':['sphinx'],
'optional':['mpi4py',
'ipython>=4.0.0',
],
#matplotlib Version see github issue #955
'plotting':[matplotlib_version,
'plotly >= 1.8.6'],
'notebook':['jupyter_client >= 4.0.6',
'ipywidgets >= 4.0.3',
'ipykernel >= 4.1.0',
'notebook >= 4.0.5',
],
},
classifiers=['License :: OSI Approved :: BSD License',
'Natural Language :: English',
'Operating System :: MacOS :: MacOS X',
'Operating System :: Microsoft :: Windows',
'Operating System :: POSIX :: Linux',
'Programming Language :: Python :: 3.5',
'Programming Language :: Python :: 3.6',
'Programming Language :: Python :: 3.7',
'Programming Language :: Python :: 3.8',
'Programming Language :: Python :: 3.9',
'Framework :: IPython',
'Intended Audience :: Science/Research',
'Intended Audience :: Developers',
'Topic :: Software Development',
'Topic :: Software Development :: Libraries :: Python Modules',
],
project_urls = {"Source Code": "https://github.com/SheffieldML/GPy",
"Bug Tracker": "https://github.com/SheffieldML/GPy/issues",
}
)
# Check config files and settings:
local_file = os.path.abspath(os.path.join(os.path.dirname(__file__), 'GPy', 'installation.cfg'))
home = os.getenv('HOME') or os.getenv('USERPROFILE')
user_file = os.path.join(home,'.config', 'GPy', 'user.cfg')
print("")
try:
if not os.path.exists(user_file):
# Does an old config exist?
old_user_file = os.path.join(home,'.gpy_user.cfg')
if os.path.exists(old_user_file):
# Move it to new location:
print("GPy: Found old config file, moving to new location {}".format(user_file))
if not os.path.exists(os.path.dirname(user_file)):
os.makedirs(os.path.dirname(user_file))
os.rename(old_user_file, user_file)
else:
# No config file exists, save informative stub to user config folder:
print("GPy: Saving user configuration file to {}".format(user_file))
if not os.path.exists(os.path.dirname(user_file)):
os.makedirs(os.path.dirname(user_file))
with open(user_file, 'w') as f:
with open(local_file, 'r') as l:
tmp = l.read()
f.write(tmp)
else:
print("GPy: User configuration file at location {}".format(user_file))
except:
print("GPy: Could not write user configuration file {}".format(user_file))
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