mirror of
https://github.com/SheffieldML/GPy.git
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301 lines
21 KiB
Text
301 lines
21 KiB
Text
WARNING: 'default' html theme has been renamed to 'classic'. Please change your html_theme setting either to the new 'alabaster' default theme, or to 'classic' to keep using the old default.
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/usr/local/lib/python2.7/dist-packages/GPy/__init__.py:docstring of GPy.load:1: WARNING: Inline interpreted text or phrase reference start-string without end-string.
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/usr/local/lib/python2.7/dist-packages/GPy/core/gp.py:docstring of GPy.core.gp.GP.optimize:8: ERROR: Unknown interpreted text role "module".
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/usr/local/lib/python2.7/dist-packages/GPy/core/gp.py:docstring of GPy.core.gp.GP.predictive_gradients:5: ERROR: Unexpected indentation.
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/usr/local/lib/python2.7/dist-packages/GPy/core/gp.py:docstring of GPy.core.gp.GP.predictive_gradients:8: WARNING: Block quote ends without a blank line; unexpected unindent.
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/usr/local/lib/python2.7/dist-packages/GPy/core/model.py:docstring of GPy.core.model.Model.optimize_restarts:29: WARNING: Explicit markup ends without a blank line; unexpected unindent.
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/home/homer/code/strongh/GPy/doc/GPy.core.rst:57: WARNING: autodoc: failed to import module u'GPy.core.svigp'; the following exception was raised:
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File "/usr/local/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 385, in import_object
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__import__(self.modname)
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ImportError: No module named svigp
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/home/homer/code/strongh/GPy/doc/GPy.core.rst:65: WARNING: autodoc: failed to import module u'GPy.core.symbolic'; the following exception was raised:
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File "/usr/local/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 385, in import_object
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__import__(self.modname)
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File "/usr/local/lib/python2.7/dist-packages/GPy/core/symbolic.py", line 10, in <module>
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from sympy.utilities.lambdify import lambdastr, _imp_namespace, _get_namespace
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ImportError: No module named lambdify
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/usr/local/lib/python2.7/dist-packages/GPy/core/parameterization/parameter_core.py:docstring of GPy.core.parameterization.parameter_core.Indexable.unset_priors:1: WARNING: Inline emphasis start-string without end-string.
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/usr/local/lib/python2.7/dist-packages/GPy/core/parameterization/parameter_core.py:docstring of GPy.core.parameterization.parameter_core.Nameable.hierarchy_name:4: WARNING: Field list ends without a blank line; unexpected unindent.
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/usr/local/lib/python2.7/dist-packages/GPy/core/parameterization/parameter_core.py:docstring of GPy.core.parameterization.parameter_core.Parameterizable.traverse:1: WARNING: Inline emphasis start-string without end-string.
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/usr/local/lib/python2.7/dist-packages/GPy/core/parameterization/parameter_core.py:docstring of GPy.core.parameterization.parameter_core.Parameterizable.traverse:1: WARNING: Inline strong start-string without end-string.
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/usr/local/lib/python2.7/dist-packages/GPy/core/parameterization/parameterized.py:docstring of GPy.core.parameterization.parameterized.Parameterized:18: ERROR: Unexpected indentation.
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/usr/local/lib/python2.7/dist-packages/GPy/core/parameterization/parameterized.py:docstring of GPy.core.parameterization.parameterized.Parameterized:20: WARNING: Block quote ends without a blank line; unexpected unindent.
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/usr/local/lib/python2.7/dist-packages/GPy/core/parameterization/ties_and_remappings.py:docstring of GPy.core.parameterization.ties_and_remappings.Tie:18: SEVERE: Unexpected section title or transition.
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================================
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/home/homer/code/strongh/GPy/doc/GPy.examples.rst:50: WARNING: autodoc: failed to import module u'GPy.examples.stochastic'; the following exception was raised:
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Traceback (most recent call last):
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File "/usr/local/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 385, in import_object
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__import__(self.modname)
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ImportError: No module named stochastic
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/home/homer/code/strongh/GPy/doc/GPy.examples.rst:58: WARNING: autodoc: failed to import module u'GPy.examples.tutorials'; the following exception was raised:
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File "/usr/local/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 385, in import_object
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__import__(self.modname)
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ImportError: No module named tutorials
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/home/homer/code/strongh/GPy/doc/GPy.inference.latent_function_inference.rst:82: WARNING: autodoc: failed to import module u'GPy.inference.latent_function_inference.var_dtc_gpu'; the following exception was raised:
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Traceback (most recent call last):
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File "/usr/local/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 385, in import_object
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__import__(self.modname)
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ImportError: No module named var_dtc_gpu
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/home/homer/code/strongh/GPy/doc/GPy.inference.optimization.rst:42: WARNING: autodoc: failed to import module u'GPy.inference.optimization.sgd'; the following exception was raised:
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File "/usr/local/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 385, in import_object
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__import__(self.modname)
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ImportError: No module named sgd
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/usr/local/lib/python2.7/dist-packages/GPy/kern/_src/coregionalize.py:docstring of GPy.kern._src.coregionalize.Coregionalize:5: ERROR: Unexpected indentation.
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/home/homer/code/strongh/GPy/doc/GPy.kern._src.rst:73: WARNING: autodoc: failed to import module u'GPy.kern._src.hierarchical'; the following exception was raised:
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File "/usr/local/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 385, in import_object
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__import__(self.modname)
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ImportError: No module named hierarchical
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/usr/local/lib/python2.7/dist-packages/GPy/kern/_src/independent_outputs.py:docstring of GPy.kern._src.independent_outputs.IndependentOutputs:9: WARNING: Field list ends without a blank line; unexpected unindent.
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/usr/local/lib/python2.7/dist-packages/GPy/kern/_src/stationary.py:docstring of GPy.kern._src.stationary.Stationary:12: WARNING: Block quote ends without a blank line; unexpected unindent.
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/usr/local/lib/python2.7/dist-packages/GPy/kern/_src/stationary.py:docstring of GPy.kern._src.stationary.Stationary:22: ERROR: Unexpected indentation.
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/usr/local/lib/python2.7/dist-packages/GPy/kern/_src/stationary.py:docstring of GPy.kern._src.stationary.Stationary:23: WARNING: Block quote ends without a blank line; unexpected unindent.
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/home/homer/code/strongh/GPy/doc/GPy.kern._src.rst:177: WARNING: autodoc: failed to import module u'GPy.kern._src.symbolic'; the following exception was raised:
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Traceback (most recent call last):
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File "/usr/local/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 385, in import_object
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__import__(self.modname)
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File "/usr/local/lib/python2.7/dist-packages/GPy/kern/_src/symbolic.py", line 5, in <module>
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from ...core.symbolic import Symbolic_core
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File "/usr/local/lib/python2.7/dist-packages/GPy/core/symbolic.py", line 10, in <module>
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from sympy.utilities.lambdify import lambdastr, _imp_namespace, _get_namespace
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ImportError: No module named lambdify
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/usr/local/lib/python2.7/dist-packages/GPy/models/gp_kronecker_gaussian_regression.py:docstring of GPy.models.gp_kronecker_gaussian_regression.GPKroneckerGaussianRegression:13: ERROR: Unexpected indentation.
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/usr/local/lib/python2.7/dist-packages/GPy/models/gp_kronecker_gaussian_regression.py:docstring of GPy.models.gp_kronecker_gaussian_regression.GPKroneckerGaussianRegression:18: WARNING: Block quote ends without a blank line; unexpected unindent.
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/home/homer/code/strongh/GPy/doc/GPy.models.rst:66: WARNING: autodoc: failed to import module u'GPy.models.gp_multioutput_regression'; the following exception was raised:
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Traceback (most recent call last):
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File "/usr/local/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 385, in import_object
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__import__(self.modname)
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ImportError: No module named gp_multioutput_regression
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/usr/local/lib/python2.7/dist-packages/GPy/models/gp_var_gauss.py:docstring of GPy.models.gp_var_gauss.GPVariationalGaussianApproximation:9: WARNING: Definition list ends without a blank line; unexpected unindent.
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/usr/local/lib/python2.7/dist-packages/GPy/models/mrd.py:docstring of GPy.models.mrd.MRD:32: WARNING: Field list ends without a blank line; unexpected unindent.
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/usr/local/lib/python2.7/dist-packages/GPy/models/mrd.py:docstring of GPy.models.mrd.MRD:32: WARNING: Inline interpreted text or phrase reference start-string without end-string.
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/usr/local/lib/python2.7/dist-packages/GPy/models/mrd.py:docstring of GPy.models.mrd.MRD:34: WARNING: Definition list ends without a blank line; unexpected unindent.
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/usr/local/lib/python2.7/dist-packages/GPy/models/sparse_gp_minibatch.py:docstring of GPy.models.sparse_gp_minibatch.SparseGPMiniBatch:2: WARNING: Block quote ends without a blank line; unexpected unindent.
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/home/homer/code/strongh/GPy/doc/GPy.models.rst:138: WARNING: autodoc: failed to import module u'GPy.models.sparse_gp_multioutput_regression'; the following exception was raised:
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Traceback (most recent call last):
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File "/usr/local/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 385, in import_object
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__import__(self.modname)
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ImportError: No module named sparse_gp_multioutput_regression
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/home/homer/code/strongh/GPy/doc/GPy.models.rst:178: WARNING: autodoc: failed to import module u'GPy.models.svigp_regression'; the following exception was raised:
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Traceback (most recent call last):
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File "/usr/local/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 385, in import_object
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__import__(self.modname)
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ImportError: No module named svigp_regression
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/usr/local/lib/python2.7/dist-packages/GPy/plotting/matplot_dep/netpbmfile.py:docstring of GPy.plotting.matplot_dep.netpbmfile.imread:6: SEVERE: Unexpected section title.
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Examples
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--------
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/usr/local/lib/python2.7/dist-packages/GPy/plotting/matplot_dep/netpbmfile.py:docstring of GPy.plotting.matplot_dep.netpbmfile.imsave:4: SEVERE: Unexpected section title.
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Examples
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--------
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/usr/local/lib/python2.7/dist-packages/GPy/testing/likelihood_tests.py:docstring of GPy.testing.likelihood_tests.dparam_checkgrad:6: ERROR: Unexpected indentation.
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/usr/local/lib/python2.7/dist-packages/GPy/testing/likelihood_tests.py:docstring of GPy.testing.likelihood_tests.dparam_checkgrad:7: WARNING: Block quote ends without a blank line; unexpected unindent.
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/usr/local/lib/python2.7/dist-packages/GPy/testing/likelihood_tests.py:docstring of GPy.testing.likelihood_tests.dparam_partial:7: WARNING: Definition list ends without a blank line; unexpected unindent.
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/usr/local/lib/python2.7/dist-packages/GPy/testing/likelihood_tests.py:docstring of GPy.testing.likelihood_tests.dparam_partial:9: ERROR: Unexpected indentation.
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/usr/local/lib/python2.7/dist-packages/GPy/util/datasets.py:docstring of GPy.util.datasets.hapmap3:7: WARNING: Block quote ends without a blank line; unexpected unindent.
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/home/homer/code/strongh/GPy/doc/GPy.util.rst:146: WARNING: autodoc: failed to import module u'GPy.util.mpi'; the following exception was raised:
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Traceback (most recent call last):
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File "/usr/local/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 385, in import_object
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__import__(self.modname)
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ImportError: No module named mpi
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/usr/local/lib/python2.7/dist-packages/GPy/util/netpbmfile.py:docstring of GPy.util.netpbmfile.imread:6: SEVERE: Unexpected section title.
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Examples
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--------
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/usr/local/lib/python2.7/dist-packages/GPy/util/netpbmfile.py:docstring of GPy.util.netpbmfile.imsave:4: SEVERE: Unexpected section title.
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Examples
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--------
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/home/homer/code/strongh/GPy/doc/GPy.util.rst:2: SEVERE: Duplicate ID: "module-GPy.util.subarray_and_sorting".
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/usr/local/lib/python2.7/dist-packages/GPy/util/subarray_and_sorting.py:docstring of GPy.util.subarray_and_sorting.common_subarrays:8: ERROR: Unexpected indentation.
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/usr/local/lib/python2.7/dist-packages/GPy/util/subarray_and_sorting.py:docstring of GPy.util.subarray_and_sorting.common_subarrays:11: SEVERE: Unexpected section title.
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Examples:
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=========
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/usr/local/lib/python2.7/dist-packages/GPy/util/subarray_and_sorting.py:docstring of GPy.util.subarray_and_sorting.common_subarrays:19: ERROR: Unexpected indentation.
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/usr/local/lib/python2.7/dist-packages/GPy/util/subarray_and_sorting.py:docstring of GPy.util.subarray_and_sorting.common_subarrays:21: WARNING: Block quote ends without a blank line; unexpected unindent.
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/home/homer/code/strongh/GPy/doc/installation.rst:22: ERROR: Unexpected indentation.
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/home/homer/code/strongh/GPy/doc/installation.rst:27: ERROR: Unexpected indentation.
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/home/homer/code/strongh/GPy/doc/tuto_creating_new_kernels.rst:58: WARNING: Inline literal start-string without end-string.
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/home/homer/code/strongh/GPy/doc/tuto_creating_new_models.rst:24: ERROR: Unknown target name: "parameterized".
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/home/homer/code/strongh/GPy/doc/tuto_interacting_with_models.rst:83: WARNING: Title underline too short.
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Interacting with Parameters:
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=======================
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/home/homer/code/strongh/GPy/doc/tuto_interacting_with_models.rst:83: WARNING: Title underline too short.
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Interacting with Parameters:
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=======================
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/home/homer/code/strongh/GPy/doc/tuto_interacting_with_models.rst:109: WARNING: Title underline too short.
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Regular expressions
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----------------
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/home/homer/code/strongh/GPy/doc/tuto_interacting_with_models.rst:164: WARNING: Title underline too short.
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Setting and fetching parameters `parameter_array`
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------------------------------------------
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/home/homer/code/strongh/GPy/doc/tuto_interacting_with_models.rst:164: WARNING: Title underline too short.
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Setting and fetching parameters `parameter_array`
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------------------------------------------
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/home/homer/code/strongh/GPy/doc/tuto_interacting_with_models.rst:220: WARNING: Title underline too short.
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Getting the model parameter's gradients
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============================
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/home/homer/code/strongh/GPy/doc/tuto_interacting_with_models.rst:220: WARNING: Title underline too short.
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Getting the model parameter's gradients
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============================
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/home/homer/code/strongh/GPy/doc/tuto_interacting_with_models.rst:236: WARNING: Title underline too short.
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Adjusting the model's constraints
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================================
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/home/homer/code/strongh/GPy/doc/tuto_interacting_with_models.rst:236: WARNING: Title underline too short.
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Adjusting the model's constraints
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================================
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/home/homer/code/strongh/GPy/doc/tuto_interacting_with_models.rst:287: WARNING: Title underline too short.
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Available Constraints
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==============
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/home/homer/code/strongh/GPy/doc/tuto_interacting_with_models.rst:287: WARNING: Title underline too short.
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Available Constraints
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==============
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/home/homer/code/strongh/GPy/doc/tuto_interacting_with_models.rst:299: WARNING: Title underline too short.
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Tying Parameters
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============
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/home/homer/code/strongh/GPy/doc/tuto_interacting_with_models.rst:299: WARNING: Title underline too short.
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Tying Parameters
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============
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/home/homer/code/strongh/GPy/doc/tuto_parameterized.rst:3: WARNING: Title overline too short.
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*******************
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Parameterization handling
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*******************
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Parameter handles
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==============
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/home/homer/code/strongh/GPy/doc/tuto_parameterized.rst:16: WARNING: Title underline too short.
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:py:class:`~GPy.core.parameterization.parameterized.Parameterized`
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==========
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:py:class:`~GPy.core.parameterization.parameterized.Parameterized`
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==========
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:py:class:`~GPy.core.parameterization.param.Param`
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===========
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/home/homer/code/strongh/GPy/doc/tuto_parameterized.rst:21: WARNING: Title underline too short.
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:py:class:`~GPy.core.parameterization.param.Param`
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===========
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WARNING: inline latex u'k(x,y) = \\sum_{i=1}^input_dim \\sigma^2_i \\max(0, x_iy_i - \\simga_q)': latex exited with error
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This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014/Debian) (preloaded format=latex)
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<argument> ...sigma ^2_i \max (0, x_iy_i - \simga
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_q)\end {split}\notag
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[1] (./math.aux) )
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(see the transcript file for additional information)
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Output written on math.dvi (1 page, 616 bytes).
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Transcript written on math.log.
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/home/homer/code/strongh/GPy/doc/tuto_interacting_with_models.rst:336: WARNING: undefined label: creating_new_kernels (if the link has no caption the label must precede a section header)
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