WARNING: 'default' html theme has been renamed to 'classic'. Please change your html_theme setting either to the new 'alabaster' default theme, or to 'classic' to keep using the old default.
/usr/local/lib/python2.7/dist-packages/GPy/__init__.py:docstring of GPy.load:1: WARNING: Inline interpreted text or phrase reference start-string without end-string.
/usr/local/lib/python2.7/dist-packages/GPy/core/gp.py:docstring of GPy.core.gp.GP.optimize:8: ERROR: Unknown interpreted text role "module".
/usr/local/lib/python2.7/dist-packages/GPy/core/gp.py:docstring of GPy.core.gp.GP.predictive_gradients:5: ERROR: Unexpected indentation.
/usr/local/lib/python2.7/dist-packages/GPy/core/gp.py:docstring of GPy.core.gp.GP.predictive_gradients:8: WARNING: Block quote ends without a blank line; unexpected unindent.
/usr/local/lib/python2.7/dist-packages/GPy/core/model.py:docstring of GPy.core.model.Model.optimize_restarts:29: WARNING: Explicit markup ends without a blank line; unexpected unindent.
/home/homer/code/strongh/GPy/doc/GPy.core.rst:57: WARNING: autodoc: failed to import module u'GPy.core.svigp'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 385, in import_object
    __import__(self.modname)
ImportError: No module named svigp
/home/homer/code/strongh/GPy/doc/GPy.core.rst:65: WARNING: autodoc: failed to import module u'GPy.core.symbolic'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 385, in import_object
    __import__(self.modname)
  File "/usr/local/lib/python2.7/dist-packages/GPy/core/symbolic.py", line 10, in <module>
    from sympy.utilities.lambdify import lambdastr, _imp_namespace, _get_namespace
ImportError: No module named lambdify
/usr/local/lib/python2.7/dist-packages/GPy/core/parameterization/parameter_core.py:docstring of GPy.core.parameterization.parameter_core.Indexable.unset_priors:1: WARNING: Inline emphasis start-string without end-string.
/usr/local/lib/python2.7/dist-packages/GPy/core/parameterization/parameter_core.py:docstring of GPy.core.parameterization.parameter_core.Nameable.hierarchy_name:4: WARNING: Field list ends without a blank line; unexpected unindent.
/usr/local/lib/python2.7/dist-packages/GPy/core/parameterization/parameter_core.py:docstring of GPy.core.parameterization.parameter_core.Parameterizable.traverse:1: WARNING: Inline emphasis start-string without end-string.
/usr/local/lib/python2.7/dist-packages/GPy/core/parameterization/parameter_core.py:docstring of GPy.core.parameterization.parameter_core.Parameterizable.traverse:1: WARNING: Inline strong start-string without end-string.
/usr/local/lib/python2.7/dist-packages/GPy/core/parameterization/parameterized.py:docstring of GPy.core.parameterization.parameterized.Parameterized:18: ERROR: Unexpected indentation.
/usr/local/lib/python2.7/dist-packages/GPy/core/parameterization/parameterized.py:docstring of GPy.core.parameterization.parameterized.Parameterized:20: WARNING: Block quote ends without a blank line; unexpected unindent.
/usr/local/lib/python2.7/dist-packages/GPy/core/parameterization/ties_and_remappings.py:docstring of GPy.core.parameterization.ties_and_remappings.Tie:18: SEVERE: Unexpected section title or transition.

================================
/home/homer/code/strongh/GPy/doc/GPy.examples.rst:50: WARNING: autodoc: failed to import module u'GPy.examples.stochastic'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 385, in import_object
    __import__(self.modname)
ImportError: No module named stochastic
/home/homer/code/strongh/GPy/doc/GPy.examples.rst:58: WARNING: autodoc: failed to import module u'GPy.examples.tutorials'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 385, in import_object
    __import__(self.modname)
ImportError: No module named tutorials
/home/homer/code/strongh/GPy/doc/GPy.inference.latent_function_inference.rst:82: WARNING: autodoc: failed to import module u'GPy.inference.latent_function_inference.var_dtc_gpu'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 385, in import_object
    __import__(self.modname)
ImportError: No module named var_dtc_gpu
/home/homer/code/strongh/GPy/doc/GPy.inference.optimization.rst:42: WARNING: autodoc: failed to import module u'GPy.inference.optimization.sgd'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 385, in import_object
    __import__(self.modname)
ImportError: No module named sgd
/usr/local/lib/python2.7/dist-packages/GPy/kern/_src/coregionalize.py:docstring of GPy.kern._src.coregionalize.Coregionalize:5: ERROR: Unexpected indentation.
/home/homer/code/strongh/GPy/doc/GPy.kern._src.rst:73: WARNING: autodoc: failed to import module u'GPy.kern._src.hierarchical'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 385, in import_object
    __import__(self.modname)
ImportError: No module named hierarchical
/usr/local/lib/python2.7/dist-packages/GPy/kern/_src/independent_outputs.py:docstring of GPy.kern._src.independent_outputs.IndependentOutputs:9: WARNING: Field list ends without a blank line; unexpected unindent.
/usr/local/lib/python2.7/dist-packages/GPy/kern/_src/stationary.py:docstring of GPy.kern._src.stationary.Stationary:12: WARNING: Block quote ends without a blank line; unexpected unindent.
/usr/local/lib/python2.7/dist-packages/GPy/kern/_src/stationary.py:docstring of GPy.kern._src.stationary.Stationary:22: ERROR: Unexpected indentation.
/usr/local/lib/python2.7/dist-packages/GPy/kern/_src/stationary.py:docstring of GPy.kern._src.stationary.Stationary:23: WARNING: Block quote ends without a blank line; unexpected unindent.
/home/homer/code/strongh/GPy/doc/GPy.kern._src.rst:177: WARNING: autodoc: failed to import module u'GPy.kern._src.symbolic'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 385, in import_object
    __import__(self.modname)
  File "/usr/local/lib/python2.7/dist-packages/GPy/kern/_src/symbolic.py", line 5, in <module>
    from ...core.symbolic import Symbolic_core
  File "/usr/local/lib/python2.7/dist-packages/GPy/core/symbolic.py", line 10, in <module>
    from sympy.utilities.lambdify import lambdastr, _imp_namespace, _get_namespace
ImportError: No module named lambdify
/usr/local/lib/python2.7/dist-packages/GPy/models/gp_kronecker_gaussian_regression.py:docstring of GPy.models.gp_kronecker_gaussian_regression.GPKroneckerGaussianRegression:13: ERROR: Unexpected indentation.
/usr/local/lib/python2.7/dist-packages/GPy/models/gp_kronecker_gaussian_regression.py:docstring of GPy.models.gp_kronecker_gaussian_regression.GPKroneckerGaussianRegression:18: WARNING: Block quote ends without a blank line; unexpected unindent.
/home/homer/code/strongh/GPy/doc/GPy.models.rst:66: WARNING: autodoc: failed to import module u'GPy.models.gp_multioutput_regression'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 385, in import_object
    __import__(self.modname)
ImportError: No module named gp_multioutput_regression
/usr/local/lib/python2.7/dist-packages/GPy/models/gp_var_gauss.py:docstring of GPy.models.gp_var_gauss.GPVariationalGaussianApproximation:9: WARNING: Definition list ends without a blank line; unexpected unindent.
/usr/local/lib/python2.7/dist-packages/GPy/models/mrd.py:docstring of GPy.models.mrd.MRD:32: WARNING: Field list ends without a blank line; unexpected unindent.
/usr/local/lib/python2.7/dist-packages/GPy/models/mrd.py:docstring of GPy.models.mrd.MRD:32: WARNING: Inline interpreted text or phrase reference start-string without end-string.
/usr/local/lib/python2.7/dist-packages/GPy/models/mrd.py:docstring of GPy.models.mrd.MRD:34: WARNING: Definition list ends without a blank line; unexpected unindent.
/usr/local/lib/python2.7/dist-packages/GPy/models/sparse_gp_minibatch.py:docstring of GPy.models.sparse_gp_minibatch.SparseGPMiniBatch:2: WARNING: Block quote ends without a blank line; unexpected unindent.
/home/homer/code/strongh/GPy/doc/GPy.models.rst:138: WARNING: autodoc: failed to import module u'GPy.models.sparse_gp_multioutput_regression'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 385, in import_object
    __import__(self.modname)
ImportError: No module named sparse_gp_multioutput_regression
/home/homer/code/strongh/GPy/doc/GPy.models.rst:178: WARNING: autodoc: failed to import module u'GPy.models.svigp_regression'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 385, in import_object
    __import__(self.modname)
ImportError: No module named svigp_regression
/usr/local/lib/python2.7/dist-packages/GPy/plotting/matplot_dep/netpbmfile.py:docstring of GPy.plotting.matplot_dep.netpbmfile.imread:6: SEVERE: Unexpected section title.

Examples
--------
/usr/local/lib/python2.7/dist-packages/GPy/plotting/matplot_dep/netpbmfile.py:docstring of GPy.plotting.matplot_dep.netpbmfile.imsave:4: SEVERE: Unexpected section title.

Examples
--------
/usr/local/lib/python2.7/dist-packages/GPy/testing/likelihood_tests.py:docstring of GPy.testing.likelihood_tests.dparam_checkgrad:6: ERROR: Unexpected indentation.
/usr/local/lib/python2.7/dist-packages/GPy/testing/likelihood_tests.py:docstring of GPy.testing.likelihood_tests.dparam_checkgrad:7: WARNING: Block quote ends without a blank line; unexpected unindent.
/usr/local/lib/python2.7/dist-packages/GPy/testing/likelihood_tests.py:docstring of GPy.testing.likelihood_tests.dparam_partial:7: WARNING: Definition list ends without a blank line; unexpected unindent.
/usr/local/lib/python2.7/dist-packages/GPy/testing/likelihood_tests.py:docstring of GPy.testing.likelihood_tests.dparam_partial:9: ERROR: Unexpected indentation.
/usr/local/lib/python2.7/dist-packages/GPy/util/datasets.py:docstring of GPy.util.datasets.hapmap3:7: WARNING: Block quote ends without a blank line; unexpected unindent.
/home/homer/code/strongh/GPy/doc/GPy.util.rst:146: WARNING: autodoc: failed to import module u'GPy.util.mpi'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 385, in import_object
    __import__(self.modname)
ImportError: No module named mpi
/usr/local/lib/python2.7/dist-packages/GPy/util/netpbmfile.py:docstring of GPy.util.netpbmfile.imread:6: SEVERE: Unexpected section title.

Examples
--------
/usr/local/lib/python2.7/dist-packages/GPy/util/netpbmfile.py:docstring of GPy.util.netpbmfile.imsave:4: SEVERE: Unexpected section title.

Examples
--------
/home/homer/code/strongh/GPy/doc/GPy.util.rst:2: SEVERE: Duplicate ID: "module-GPy.util.subarray_and_sorting".
/usr/local/lib/python2.7/dist-packages/GPy/util/subarray_and_sorting.py:docstring of GPy.util.subarray_and_sorting.common_subarrays:8: ERROR: Unexpected indentation.
/usr/local/lib/python2.7/dist-packages/GPy/util/subarray_and_sorting.py:docstring of GPy.util.subarray_and_sorting.common_subarrays:11: SEVERE: Unexpected section title.

Examples:
=========
/usr/local/lib/python2.7/dist-packages/GPy/util/subarray_and_sorting.py:docstring of GPy.util.subarray_and_sorting.common_subarrays:19: ERROR: Unexpected indentation.
/usr/local/lib/python2.7/dist-packages/GPy/util/subarray_and_sorting.py:docstring of GPy.util.subarray_and_sorting.common_subarrays:21: WARNING: Block quote ends without a blank line; unexpected unindent.
/home/homer/code/strongh/GPy/doc/installation.rst:22: ERROR: Unexpected indentation.
/home/homer/code/strongh/GPy/doc/installation.rst:27: ERROR: Unexpected indentation.
/home/homer/code/strongh/GPy/doc/tuto_creating_new_kernels.rst:58: WARNING: Inline literal start-string without end-string.
/home/homer/code/strongh/GPy/doc/tuto_creating_new_models.rst:24: ERROR: Unknown target name: "parameterized".
/home/homer/code/strongh/GPy/doc/tuto_interacting_with_models.rst:83: WARNING: Title underline too short.

Interacting with Parameters:
=======================
/home/homer/code/strongh/GPy/doc/tuto_interacting_with_models.rst:83: WARNING: Title underline too short.

Interacting with Parameters:
=======================
/home/homer/code/strongh/GPy/doc/tuto_interacting_with_models.rst:109: WARNING: Title underline too short.

Regular expressions
----------------
/home/homer/code/strongh/GPy/doc/tuto_interacting_with_models.rst:164: WARNING: Title underline too short.

Setting and fetching parameters `parameter_array`
------------------------------------------
/home/homer/code/strongh/GPy/doc/tuto_interacting_with_models.rst:164: WARNING: Title underline too short.

Setting and fetching parameters `parameter_array`
------------------------------------------
/home/homer/code/strongh/GPy/doc/tuto_interacting_with_models.rst:220: WARNING: Title underline too short.

Getting the model parameter's gradients
============================
/home/homer/code/strongh/GPy/doc/tuto_interacting_with_models.rst:220: WARNING: Title underline too short.

Getting the model parameter's gradients
============================
/home/homer/code/strongh/GPy/doc/tuto_interacting_with_models.rst:236: WARNING: Title underline too short.

Adjusting the model's constraints
================================
/home/homer/code/strongh/GPy/doc/tuto_interacting_with_models.rst:236: WARNING: Title underline too short.

Adjusting the model's constraints
================================
/home/homer/code/strongh/GPy/doc/tuto_interacting_with_models.rst:287: WARNING: Title underline too short.

Available Constraints
==============
/home/homer/code/strongh/GPy/doc/tuto_interacting_with_models.rst:287: WARNING: Title underline too short.

Available Constraints
==============
/home/homer/code/strongh/GPy/doc/tuto_interacting_with_models.rst:299: WARNING: Title underline too short.

Tying Parameters
============
/home/homer/code/strongh/GPy/doc/tuto_interacting_with_models.rst:299: WARNING: Title underline too short.

Tying Parameters
============
/home/homer/code/strongh/GPy/doc/tuto_parameterized.rst:3: WARNING: Title overline too short.

*******************
Parameterization handling
*******************
/home/homer/code/strongh/GPy/doc/tuto_parameterized.rst:10: WARNING: Title underline too short.

Parameter handles
==============
/home/homer/code/strongh/GPy/doc/tuto_parameterized.rst:16: WARNING: Title underline too short.

:py:class:`~GPy.core.parameterization.parameterized.Parameterized`
==========
/home/homer/code/strongh/GPy/doc/tuto_parameterized.rst:16: WARNING: Title underline too short.

:py:class:`~GPy.core.parameterization.parameterized.Parameterized`
==========
/home/homer/code/strongh/GPy/doc/tuto_parameterized.rst:21: WARNING: Title underline too short.

:py:class:`~GPy.core.parameterization.param.Param`
===========
/home/homer/code/strongh/GPy/doc/tuto_parameterized.rst:21: WARNING: Title underline too short.

:py:class:`~GPy.core.parameterization.param.Param`
===========
/home/homer/code/strongh/GPy/doc/installation.rst:: WARNING: document isn't included in any toctree
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WARNING: inline latex u'k(x,y) = \\sum_{i=1}^input_dim \\sigma^2_i \\max(0, x_iy_i - \\simga_q)': latex exited with error
[stdout]
This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014/Debian) (preloaded format=latex)
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entering extended mode
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LaTeX2e <2014/05/01>
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/home/homer/code/strongh/GPy/doc/tuto_interacting_with_models.rst:336: WARNING: undefined label: creating_new_kernels (if the link has no caption the label must precede a section header)
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