diff --git a/CHANGELOG.md b/CHANGELOG.md index 7990ead2..94d41f81 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,24 +1,133 @@ # Changelog -## v1.9.6 (2018-10-30) -## New +## v1.9.7 (2019-05-17) -* Added a new class that enables using multiple likelihoods [@esiivola] +### Fix -* Alex grig kalman new [@AlexGrig, @mzwiessele] +* Version. [mzwiessele] -## Fix +* Plotting. [mzwiessele] -* fix typo in docstring for GP.opimize() [@RobRomijnders] +* Matplotlib 2.0 mlba -> cbook: [mzwiessele] -* Updates to posterior sampling [@lawrennd] +### Other -* Jayanthkoushik cython fix [@jayanthkoushik, @mzwiessele] +* Bump version: 1.9.6 → 1.9.7. [mzwiessele] -* Added missing columns (:), fixed indentation [@vlavorini] +* Merge branch 'deploy' into devel. [mzwiessele] + +* Merge pull request #703 from SheffieldML/devel. [Zhenwen Dai] + + Deploy the version 1.9.6 + +* Merge pull request #709 from KOLANICH/ignoring_cython-generated_C_sources. [Zhenwen Dai] + + Cython-generated files should be regenerated + +* Cython-generated files should be regenerated. [KOLANICH] + +* Merge pull request #758 from marpulli/py37_travis. [Zhenwen Dai] + + Add travis build for 3.7, remove for 3.5, bump version to 1.9.7 + +* Bump version to 1.9.7. [Mark Pullin] + +* Move python 3.5 build to 3.7. [Mark Pullin] + +* Update README.md. [Mike Smith] + +* I've added these steps to install necessary libraries. [Mike Smith] + + Lots of people seem to have this problem with an "error: command 'gcc' failed with exit status 1" on installing. + E.g. this can be reproduced on a clean AWS Ubuntu install. + + Feel free to revert, but this issue comes up regularly. + +* Merge pull request #722 from jopago/devel. [Zhenwen Dai] + + Add to_dict methods to White and Brownian kernels + +* Update static.py. [Joan Gonzalvez] + +* Update brownian.py. [Joan Gonzalvez] + + added to_dict method + +* Merge pull request #718 from KOLANICH/patch-1. [Zhenwen Dai] + + Don't import `datasets` by default since it is almost never needed + +* Don't import datasets by default since it is almost never needed. [KOLANICH] + +* Merge pull request #708 from KOLANICH/cython_code_fix. [Zhenwen Dai] + + Integer division is needed here. + +* Integer division is needed here. [KOLANICH] + +* Fix the bug due to changes in Numpy (#744) [Zhenwen Dai] + +* Merge pull request #719 from ajgpitch/install_fixes. [Max Zwiessele] + + FIXES - for installing under Python 3.7 + +* Recythonised c files. [Alexander Pitchford] + +* Merge branch 'fix-state_space_cython-misc' into install_fixes. [Alexander Pitchford] + +* Type fixed - Q_square_root_dict. [Alexander Pitchford] + +* Merge branch 'fix-state_space_cython-misc' into install_fixes. [Alexander Pitchford] + +* Merge branch 'devel' into fix-state_space_cython-misc. [Alexander Pitchford] + +* Merge branch 'build_ext-source_pyx' into install_fixes. [Alexander Pitchford] + +* Merge branch 'devel' into build_ext-source_pyx. [Alexander Pitchford] + +* Merge branch 'fix-cython-import_array' into install_fixes. [Alexander Pitchford] + +* Merge branch 'devel' into fix-cython-import_array. [Alexander Pitchford] + +* Fix the version number in appveyor.yml. [Zhenwen Dai] + +* Fix the version number in setup.cfg. [Dai] + +* Merge branch 'deploy' into devel. [Zhenwen Dai] + +* Merge pull request #656 from SheffieldML/devel. [Max Zwiessele] + + push PR to deploy + +* Bump the version: 1.9.5 -> 1.9.6. [Zhenwen Dai] + +* Merge pull request #691 from vlavorini/devel. [Zhenwen Dai] + + Added missing columns (:), fixed indentation + +* Added missing columns (:), fixed indentation. [Vincenzo Lavorini] + +* Fix the bug in the prediction of full covariance matrix (#702) [Zhenwen Dai] + + * fix the bug in the prediction of full covariance matrix + + * Fix the test cases. + + * update the version requirement for matplotlib + +* Merge branch 'build_ext-source_pyx' into install_fixes. [Alexander Pitchford] + +* Ext sources changed to pyx. [Alexander Pitchford] + +* Merge branch 'fix-cython-import_array' into install_fixes. [Alexander Pitchford] + +* Np.import_array() added to files where cimport numpy used. [Alexander Pitchford] + +* Add missing colons and fix indentation. [Alexander Pitchford] + +* Pkg: changelog. [mzwiessele] -* Fix the bug in the prediction of full covariance matrix [@zhenwendai] ## v1.9.5 (2018-09-02) @@ -2503,8 +2612,8 @@ * Merge branch 'devel' into paramz. [mzwiessele] Conflicts: - GPy/core/parameterization/parameter_core.py - GPy/testing/pickle_tests.py + GPy/core/parameterization/parameter_core.py + GPy/testing/pickle_tests.py * [paramz] wrapping - todo: deprecation warnings. [mzwiessele] @@ -4017,7 +4126,7 @@ * Merge remote-tracking branch 'upstream/devel' into devel. [tjhgit] Conflicts: - GPy/kern/__init__.py + GPy/kern/__init__.py * Added spline kernel (from P. Hennig) to GPy. [tjhgit] @@ -5552,10 +5661,10 @@ * Integrated Laplace and merged Merge remote-tracking branch 'gpy_real/devel' into merge_branch. [Alan Saul] Conflicts: - GPy/core/gp.py - GPy/likelihoods/__init__.py - GPy/likelihoods/likelihood_functions.py - GPy/likelihoods/link_functions.py + GPy/core/gp.py + GPy/likelihoods/__init__.py + GPy/likelihoods/likelihood_functions.py + GPy/likelihoods/link_functions.py * Fixed white variance. [Alan Saul] @@ -5694,7 +5803,7 @@ * Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Max Zwiessele] Conflicts: - GPy/inference/latent_function_inference/inferenceX.py + GPy/inference/latent_function_inference/inferenceX.py * Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Zhenwen Dai] @@ -6209,7 +6318,7 @@ * [dim red plots] plotting big models. [mzwiessele] Conflicts: - GPy/plotting/matplot_dep/dim_reduction_plots.py + GPy/plotting/matplot_dep/dim_reduction_plots.py * Add debug util module and try to debug sparsegp_mpi. [Zhenwen Dai] @@ -6226,8 +6335,8 @@ * [normalizer] first commit for normalizer in GPy. [mzwiessele] Conflicts: - GPy/core/sparse_gp.py - GPy/models/bayesian_gplvm.py + GPy/core/sparse_gp.py + GPy/models/bayesian_gplvm.py * Further bug fix for sparsegp_mpi. [Zhenwen Dai] @@ -6246,8 +6355,8 @@ * [ard] enhanced ard handling and plotting. [mzwiessele] Conflicts: - GPy/kern/_src/linear.py - GPy/models/ss_gplvm.py + GPy/kern/_src/linear.py + GPy/models/ss_gplvm.py * [linear] einsums. [mzwiessele] @@ -6350,14 +6459,14 @@ * [inference] less constant jitter, and jitter adjustements. [mzwiessele] Conflicts: - GPy/util/linalg.py + GPy/util/linalg.py * Fixed a bug in optimize restarts: it now used optimizer_array. [James Hensman] * [vardtc missing] logging. [maxz] Conflicts: - GPy/inference/latent_function_inference/var_dtc.py + GPy/inference/latent_function_inference/var_dtc.py * [init] normalization bugfix. [mzwiessele] @@ -6858,7 +6967,7 @@ * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] Conflicts: - GPy/kern/_src/kern.py + GPy/kern/_src/kern.py * Missing file, import line commented. [Ricardo] @@ -6907,8 +7016,8 @@ * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] Conflicts: - GPy/models/gp_classification.py - GPy/models/sparse_gp_classification.py + GPy/models/gp_classification.py + GPy/models/sparse_gp_classification.py * New file. [Ricardo] @@ -7189,7 +7298,7 @@ * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] Conflicts: - GPy/likelihoods/mixed_noise.py + GPy/likelihoods/mixed_noise.py * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] @@ -7274,14 +7383,14 @@ * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Max Zwiessele] Conflicts: - GPy/likelihoods/gaussian.py + GPy/likelihoods/gaussian.py * Bug fix w.r.t. var_dtc.py. [Zhenwen Dai] * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] Conflicts: - GPy/inference/latent_function_inference/var_dtc.py + GPy/inference/latent_function_inference/var_dtc.py * New model SparseGPCoregionalizedRegression. [Ricardo] @@ -7481,8 +7590,8 @@ * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] Conflicts: - GPy/core/gp.py - GPy/plotting/matplot_dep/models_plots.py + GPy/core/gp.py + GPy/plotting/matplot_dep/models_plots.py * GPCoregionalizedRegresssion added. [Ricardo] @@ -7743,7 +7852,7 @@ * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] Conflicts: - GPy/kern/_src/constructors.py + GPy/kern/_src/constructors.py * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] @@ -7752,8 +7861,8 @@ * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] Conflicts: - GPy/kern/kern.py - GPy/kern/parts/prod.py + GPy/kern/kern.py + GPy/kern/parts/prod.py * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] @@ -7762,7 +7871,7 @@ * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] Conflicts: - GPy/kern/parts/prod.py + GPy/kern/parts/prod.py * Minor changes. [Ricardo] @@ -8125,7 +8234,7 @@ * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Max Zwiessele] Conflicts: - GPy/core/parameterization/param.py + GPy/core/parameterization/param.py * Fixed a couple of small params bugs. [Alan Saul] @@ -8140,9 +8249,9 @@ * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Max Zwiessele] Conflicts: - GPy/core/parameterization/param.py - GPy/core/parameterization/parameter_core.py - GPy/core/parameterization/parameterized.py + GPy/core/parameterization/param.py + GPy/core/parameterization/parameter_core.py + GPy/core/parameterization/parameterized.py * Stupid error, needed to actually USE the gradients in student t... Looks like s2 of rasm's may have an extra -? dW_df == -d2logpdf_df not just d2logpdf_df? [Alan Saul] @@ -8227,7 +8336,7 @@ * Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo] Conflicts: - GPy/core/sparse_gp.py + GPy/core/sparse_gp.py * Typo corrected. [Ricardo] @@ -8641,7 +8750,7 @@ * Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Ricardo] Conflicts: - GPy/examples/classification.py + GPy/examples/classification.py * Fixed a bug in Neil's otherwise tidy hetero kernel. [James Hensman] @@ -8710,8 +8819,8 @@ * Merge branch 'devel' into params. [Max Zwiessele] Conflicts: - GPy/core/transformations.py - GPy/kern/parts/kernpart.py + GPy/core/transformations.py + GPy/kern/parts/kernpart.py * Merge pull request #77 from jamesmcm/devel. [James McMurray] @@ -8770,10 +8879,10 @@ * Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Ricardo] Conflicts: - GPy/examples/regression.py - GPy/kern/constructors.py - GPy/testing/kernel_tests.py - GPy/util/multioutput.py + GPy/examples/regression.py + GPy/kern/constructors.py + GPy/testing/kernel_tests.py + GPy/util/multioutput.py * Other local changes. [Neil Lawrence] @@ -8798,15 +8907,15 @@ * Merge branch 'linK_functions2' into devel. [Ricardo] Conflicts: - GPy/core/gp.py - GPy/core/gp_base.py - GPy/core/sparse_gp.py - GPy/examples/regression.py - GPy/kern/constructors.py - GPy/kern/parts/coregionalise.py - GPy/models/__init__.py - GPy/models/sparse_gp_classification.py - GPy/util/__init__.py + GPy/core/gp.py + GPy/core/gp_base.py + GPy/core/sparse_gp.py + GPy/examples/regression.py + GPy/kern/constructors.py + GPy/kern/parts/coregionalise.py + GPy/models/__init__.py + GPy/models/sparse_gp_classification.py + GPy/util/__init__.py * Useless files deleted. [Ricardo] @@ -9479,7 +9588,7 @@ * Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Ricardo] Conflicts: - GPy/core/fitc.py + GPy/core/fitc.py * FITC example added. [Ricardo] @@ -9647,7 +9756,7 @@ * Merge branch 'devel' of https://github.com/SheffieldML/GPy into devel. [Neil Lawrence] Conflicts: - GPy/models/GPLVM.py + GPy/models/GPLVM.py * Remove copies (they are now in visualize code ...). [Neil Lawrence] @@ -9795,7 +9904,7 @@ * Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Ricardo] Conflicts: - GPy/models/GP.py + GPy/models/GP.py * Plot function got broken with last commit, this fixes it. [Ricardo] @@ -10137,7 +10246,7 @@ * Merge branch 'devel' of https://github.com/SheffieldML/GPy into devel. [Neil Lawrence] Conflicts: - GPy/examples/dimensionality_reduction.py + GPy/examples/dimensionality_reduction.py * Minor changes. [Neil Lawrence] @@ -10208,8 +10317,8 @@ * Merge branch 'devel' into new_constraints. [James Hensman] Conflicts: - GPy/core/model.py - GPy/core/parameterised.py + GPy/core/model.py + GPy/core/parameterised.py * Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Max Zwiessele] @@ -10771,7 +10880,7 @@ * Merge branch 'master' of github.com:SheffieldML/GPy. [Ricardo Andrade] Conflicts: - GPy/examples/__init__.py + GPy/examples/__init__.py * Working on psi cross terms. [Nicolo Fusi] @@ -11211,7 +11320,7 @@ * Merge branch 'newGP' [James Hensman] Conflicts: - GPy/models/GP_regression.py + GPy/models/GP_regression.py * Simplified the checkgrad logic somewhat. [James Hensman] @@ -11242,7 +11351,7 @@ * Merge branch 'newGP' of github.com:SheffieldML/GPy into newGP. [James Hensman] Conflicts: - GPy/likelihoods/EP.py + GPy/likelihoods/EP.py * James' debugging of the EP/GP interface. [Ricardo Andrade] @@ -11253,8 +11362,8 @@ * Merge branch 'newGP' of github.com:SheffieldML/GPy into newGP. [Ricardo Andrade] Conflicts: - GPy/likelihoods/EP.py - GPy/likelihoods/likelihood_functions.py + GPy/likelihoods/EP.py + GPy/likelihoods/likelihood_functions.py * So many changes. [Ricardo Andrade] @@ -12018,3 +12127,5 @@ * Core file. [Nicolo Fusi] * Initial commit. [Nicolò Fusi] + +