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Fixed examples tests, started changing datasets code which has a few bugs

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This commit is contained in:
Alan Saul 2013-11-29 15:45:18 +00:00
parent 9e6cc7ea6e
commit f26455f2b2
3 changed files with 39 additions and 18 deletions
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37
GPy/testing/examples_tests.py
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@ -10,6 +10,7 @@ import os
import random
from nose.tools import nottest
import sys
import itertools
class ExamplesTests(unittest.TestCase):
def _checkgrad(self, Model):
@ -39,8 +40,19 @@ def model_instance(model):
#assert isinstance(model, GPy.core.model)
return isinstance(model, GPy.core.model.Model)
@nottest
def flatten_nested(lst):
result = []
for element in lst:
if hasattr(element, '__iter__'):
result.extend(flatten_nested(element))
else:
result.append(element)
return result
#@nottest
def test_models():
optimize=False
plot=True
examples_path = os.path.dirname(GPy.examples.__file__)
# Load modules
failing_models = {}
@ -54,29 +66,34 @@ def test_models():
print "After"
print functions
for example in functions:
if example[0] in ['oil', 'silhouette', 'GPLVM_oil_100', 'brendan_faces']:
print "SKIPPING"
continue
#if example[0] in ['oil', 'silhouette', 'GPLVM_oil_100', 'brendan_faces']:
#print "SKIPPING"
#continue
print "Testing example: ", example[0]
# Generate model
try:
model = example[1]()
models = [ example[1](optimize=optimize, plot=plot) ]
#If more than one model returned, flatten them
models = flatten_nested(models)
except Exception as e:
failing_models[example[0]] = "Cannot make model: \n{e}".format(e=e)
else:
print model
print models
model_checkgrads.description = 'test_checkgrads_%s' % example[0]
try:
if not model_checkgrads(model):
failing_models[model_checkgrads.description] = False
for model in models:
if not model_checkgrads(model):
failing_models[model_checkgrads.description] = False
except Exception as e:
failing_models[model_checkgrads.description] = e
model_instance.description = 'test_instance_%s' % example[0]
try:
if not model_instance(model):
failing_models[model_instance.description] = False
for model in models:
if not model_instance(model):
failing_models[model_instance.description] = False
except Exception as e:
failing_models[model_instance.description] = e