diff --git a/GPy/examples/__init__.py b/GPy/examples/__init__.py new file mode 100644 index 00000000..e69de29b diff --git a/doc/GPy.core.rst b/doc/GPy.core.rst new file mode 100644 index 00000000..e02aaa2a --- /dev/null +++ b/doc/GPy.core.rst @@ -0,0 +1,35 @@ +core Package +============ + +:mod:`core` Package +------------------- + +.. automodule:: GPy.core + :members: + :undoc-members: + :show-inheritance: + +:mod:`model` Module +------------------- + +.. automodule:: GPy.core.model + :members: + :undoc-members: + :show-inheritance: + +:mod:`parameterised` Module +--------------------------- + +.. automodule:: GPy.core.parameterised + :members: + :undoc-members: + :show-inheritance: + +:mod:`priors` Module +-------------------- + +.. automodule:: GPy.core.priors + :members: + :undoc-members: + :show-inheritance: + diff --git a/doc/GPy.inference.rst b/doc/GPy.inference.rst new file mode 100644 index 00000000..6f4ab691 --- /dev/null +++ b/doc/GPy.inference.rst @@ -0,0 +1,35 @@ +inference Package +================= + +:mod:`Expectation_Propagation` Module +------------------------------------- + +.. automodule:: GPy.inference.Expectation_Propagation + :members: + :undoc-members: + :show-inheritance: + +:mod:`likelihoods` Module +------------------------- + +.. automodule:: GPy.inference.likelihoods + :members: + :undoc-members: + :show-inheritance: + +:mod:`optimization` Module +-------------------------- + +.. automodule:: GPy.inference.optimization + :members: + :undoc-members: + :show-inheritance: + +:mod:`samplers` Module +---------------------- + +.. automodule:: GPy.inference.samplers + :members: + :undoc-members: + :show-inheritance: + diff --git a/doc/GPy.kern.rst b/doc/GPy.kern.rst new file mode 100644 index 00000000..95943178 --- /dev/null +++ b/doc/GPy.kern.rst @@ -0,0 +1,139 @@ +kern Package +============ + +:mod:`kern` Package +------------------- + +.. automodule:: GPy.kern + :members: + :undoc-members: + :show-inheritance: + +:mod:`Brownian` Module +---------------------- + +.. automodule:: GPy.kern.Brownian + :members: + :undoc-members: + :show-inheritance: + +:mod:`Matern32` Module +---------------------- + +.. automodule:: GPy.kern.Matern32 + :members: + :undoc-members: + :show-inheritance: + +:mod:`Matern52` Module +---------------------- + +.. automodule:: GPy.kern.Matern52 + :members: + :undoc-members: + :show-inheritance: + +:mod:`bias` Module +------------------ + +.. automodule:: GPy.kern.bias + :members: + :undoc-members: + :show-inheritance: + +:mod:`constructors` Module +-------------------------- + +.. automodule:: GPy.kern.constructors + :members: + :undoc-members: + :show-inheritance: + +:mod:`exponential` Module +------------------------- + +.. automodule:: GPy.kern.exponential + :members: + :undoc-members: + :show-inheritance: + +:mod:`finite_dimensional` Module +-------------------------------- + +.. automodule:: GPy.kern.finite_dimensional + :members: + :undoc-members: + :show-inheritance: + +:mod:`kern` Module +------------------ + +.. automodule:: GPy.kern.kern + :members: + :undoc-members: + :show-inheritance: + +:mod:`kernpart` Module +---------------------- + +.. automodule:: GPy.kern.kernpart + :members: + :undoc-members: + :show-inheritance: + +:mod:`linear` Module +-------------------- + +.. automodule:: GPy.kern.linear + :members: + :undoc-members: + :show-inheritance: + +:mod:`linear_ARD` Module +------------------------ + +.. automodule:: GPy.kern.linear_ARD + :members: + :undoc-members: + :show-inheritance: + +:mod:`rbf-testing` Module +------------------------- + +.. automodule:: GPy.kern.rbf-testing + :members: + :undoc-members: + :show-inheritance: + +:mod:`rbf` Module +----------------- + +.. automodule:: GPy.kern.rbf + :members: + :undoc-members: + :show-inheritance: + +:mod:`spline` Module +-------------------- + +.. automodule:: GPy.kern.spline + :members: + :undoc-members: + :show-inheritance: + +:mod:`sympykern` Module +----------------------- + +.. automodule:: GPy.kern.sympykern + :members: + :undoc-members: + :show-inheritance: + +:mod:`white` Module +------------------- + +.. automodule:: GPy.kern.white + :members: + :undoc-members: + :show-inheritance: + diff --git a/doc/GPy.models.rst b/doc/GPy.models.rst new file mode 100644 index 00000000..47af78ab --- /dev/null +++ b/doc/GPy.models.rst @@ -0,0 +1,75 @@ +models Package +============== + +:mod:`models` Package +--------------------- + +.. automodule:: GPy.models + :members: + :undoc-members: + :show-inheritance: + +:mod:`GPLVM` Module +------------------- + +.. automodule:: GPy.models.GPLVM + :members: + :undoc-members: + :show-inheritance: + +:mod:`GP_EP` Module +------------------- + +.. automodule:: GPy.models.GP_EP + :members: + :undoc-members: + :show-inheritance: + +:mod:`GP_regression` Module +--------------------------- + +.. automodule:: GPy.models.GP_regression + :members: + :undoc-members: + :show-inheritance: + +:mod:`generalized_FITC` Module +------------------------------ + +.. automodule:: GPy.models.generalized_FITC + :members: + :undoc-members: + :show-inheritance: + +:mod:`sparse_GPLVM` Module +-------------------------- + +.. automodule:: GPy.models.sparse_GPLVM + :members: + :undoc-members: + :show-inheritance: + +:mod:`sparse_GP_regression` Module +---------------------------------- + +.. automodule:: GPy.models.sparse_GP_regression + :members: + :undoc-members: + :show-inheritance: + +:mod:`uncollapsed_sparse_GP` Module +----------------------------------- + +.. automodule:: GPy.models.uncollapsed_sparse_GP + :members: + :undoc-members: + :show-inheritance: + +:mod:`warped_GP` Module +----------------------- + +.. automodule:: GPy.models.warped_GP + :members: + :undoc-members: + :show-inheritance: + diff --git a/doc/GPy.rst b/doc/GPy.rst new file mode 100644 index 00000000..61a4242c --- /dev/null +++ b/doc/GPy.rst @@ -0,0 +1,22 @@ +GPy Package +=========== + +:mod:`GPy` Package +------------------ + +.. automodule:: GPy.__init__ + :members: + :undoc-members: + :show-inheritance: + +Subpackages +----------- + +.. toctree:: + + GPy.core + GPy.inference + GPy.kern + GPy.models + GPy.util + diff --git a/doc/GPy.util.rst b/doc/GPy.util.rst new file mode 100644 index 00000000..5bec990b --- /dev/null +++ b/doc/GPy.util.rst @@ -0,0 +1,67 @@ +util Package +============ + +:mod:`util` Package +------------------- + +.. automodule:: GPy.util + :members: + :undoc-members: + :show-inheritance: + +:mod:`Tango` Module +------------------- + +.. automodule:: GPy.util.Tango + :members: + :undoc-members: + :show-inheritance: + +:mod:`datasets` Module +---------------------- + +.. automodule:: GPy.util.datasets + :members: + :undoc-members: + :show-inheritance: + +:mod:`linalg` Module +-------------------- + +.. automodule:: GPy.util.linalg + :members: + :undoc-members: + :show-inheritance: + +:mod:`misc` Module +------------------ + +.. automodule:: GPy.util.misc + :members: + :undoc-members: + :show-inheritance: + +:mod:`plot` Module +------------------ + +.. automodule:: GPy.util.plot + :members: + :undoc-members: + :show-inheritance: + +:mod:`squashers` Module +----------------------- + +.. automodule:: GPy.util.squashers + :members: + :undoc-members: + :show-inheritance: + +:mod:`warping_functions` Module +------------------------------- + +.. automodule:: GPy.util.warping_functions + :members: + :undoc-members: + :show-inheritance: + diff --git a/doc/modules.rst b/doc/modules.rst new file mode 100644 index 00000000..9c698ca2 --- /dev/null +++ b/doc/modules.rst @@ -0,0 +1,7 @@ +GPy +=== + +.. toctree:: + :maxdepth: 4 + + GPy