Removed variational.py

This commit is contained in:
Alan Saul 2013-12-17 13:44:18 +00:00
parent 6c9c3f9f6d
commit e77f4039ea
16 changed files with 620 additions and 595 deletions

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@ -1,19 +0,0 @@
'''
Created on 6 Nov 2013
@author: maxz
'''
from parameterized import Parameterized
from parameter import Param
class Normal(Parameterized):
'''
Normal distribution for variational approximations.
holds the means and variances for a factorizing multivariate normal distribution
'''
def __init__(self, name, means, variances):
Parameterized.__init__(self, name=name)
self.means = Param("mean", means)
self.variances = Param('variance', variances)
self.add_parameters(self.means, self.variances)

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@ -593,7 +593,6 @@ class LaplaceTests(unittest.TestCase):
grad.checkgrad(verbose=1)
self.assertTrue(grad.checkgrad())
#@unittest.skip('Not working yet, needs to be checked')
def test_laplace_log_likelihood(self):
debug = False
real_std = 0.1

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@ -1,107 +1,102 @@
core Package
============
GPy.core package
================
:mod:`core` Package
-------------------
Submodules
----------
.. automodule:: GPy.core
:members:
:undoc-members:
:show-inheritance:
:mod:`domains` Module
---------------------
GPy.core.domains module
-----------------------
.. automodule:: GPy.core.domains
:members:
:undoc-members:
:show-inheritance:
:mod:`fitc` Module
------------------
GPy.core.fitc module
--------------------
.. automodule:: GPy.core.fitc
:members:
:undoc-members:
:show-inheritance:
:mod:`gp` Module
----------------
GPy.core.gp module
------------------
.. automodule:: GPy.core.gp
:members:
:undoc-members:
:show-inheritance:
:mod:`gp_base` Module
---------------------
GPy.core.gp_base module
-----------------------
.. automodule:: GPy.core.gp_base
:members:
:undoc-members:
:show-inheritance:
:mod:`mapping` Module
---------------------
GPy.core.mapping module
-----------------------
.. automodule:: GPy.core.mapping
:members:
:undoc-members:
:show-inheritance:
:mod:`model` Module
-------------------
GPy.core.model module
---------------------
.. automodule:: GPy.core.model
:members:
:undoc-members:
:show-inheritance:
:mod:`parameterized` Module
---------------------------
GPy.core.parameterized module
-----------------------------
.. automodule:: GPy.core.parameterized
:members:
:undoc-members:
:show-inheritance:
:mod:`priors` Module
--------------------
GPy.core.priors module
----------------------
.. automodule:: GPy.core.priors
:members:
:undoc-members:
:show-inheritance:
:mod:`sparse_gp` Module
-----------------------
GPy.core.sparse_gp module
-------------------------
.. automodule:: GPy.core.sparse_gp
:members:
:undoc-members:
:show-inheritance:
:mod:`svigp` Module
-------------------
GPy.core.svigp module
---------------------
.. automodule:: GPy.core.svigp
:members:
:undoc-members:
:show-inheritance:
:mod:`transformations` Module
-----------------------------
GPy.core.transformations module
-------------------------------
.. automodule:: GPy.core.transformations
:members:
:undoc-members:
:show-inheritance:
:mod:`variational` Module
-------------------------
.. automodule:: GPy.core.variational
Module contents
---------------
.. automodule:: GPy.core
:members:
:undoc-members:
:show-inheritance:

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@ -1,59 +1,62 @@
examples Package
================
GPy.examples package
====================
:mod:`examples` Package
-----------------------
Submodules
----------
.. automodule:: GPy.examples
:members:
:undoc-members:
:show-inheritance:
:mod:`classification` Module
----------------------------
GPy.examples.classification module
----------------------------------
.. automodule:: GPy.examples.classification
:members:
:undoc-members:
:show-inheritance:
:mod:`dimensionality_reduction` Module
--------------------------------------
GPy.examples.dimensionality_reduction module
--------------------------------------------
.. automodule:: GPy.examples.dimensionality_reduction
:members:
:undoc-members:
:show-inheritance:
:mod:`laplace_approximations` Module
------------------------------------
GPy.examples.non_gaussian module
--------------------------------
.. automodule:: GPy.examples.laplace_approximations
.. automodule:: GPy.examples.non_gaussian
:members:
:undoc-members:
:show-inheritance:
:mod:`regression` Module
------------------------
GPy.examples.regression module
------------------------------
.. automodule:: GPy.examples.regression
:members:
:undoc-members:
:show-inheritance:
:mod:`stochastic` Module
------------------------
GPy.examples.stochastic module
------------------------------
.. automodule:: GPy.examples.stochastic
:members:
:undoc-members:
:show-inheritance:
:mod:`tutorials` Module
-----------------------
GPy.examples.tutorials module
-----------------------------
.. automodule:: GPy.examples.tutorials
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.examples
:members:
:undoc-members:
:show-inheritance:

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@ -1,51 +1,62 @@
inference Package
=================
GPy.inference package
=====================
:mod:`conjugate_gradient_descent` Module
----------------------------------------
Submodules
----------
GPy.inference.conjugate_gradient_descent module
-----------------------------------------------
.. automodule:: GPy.inference.conjugate_gradient_descent
:members:
:undoc-members:
:show-inheritance:
:mod:`gradient_descent_update_rules` Module
-------------------------------------------
GPy.inference.gradient_descent_update_rules module
--------------------------------------------------
.. automodule:: GPy.inference.gradient_descent_update_rules
:members:
:undoc-members:
:show-inheritance:
:mod:`optimization` Module
--------------------------
GPy.inference.optimization module
---------------------------------
.. automodule:: GPy.inference.optimization
:members:
:undoc-members:
:show-inheritance:
:mod:`samplers` Module
----------------------
GPy.inference.samplers module
-----------------------------
.. automodule:: GPy.inference.samplers
:members:
:undoc-members:
:show-inheritance:
:mod:`scg` Module
-----------------
GPy.inference.scg module
------------------------
.. automodule:: GPy.inference.scg
:members:
:undoc-members:
:show-inheritance:
:mod:`sgd` Module
-----------------
GPy.inference.sgd module
------------------------
.. automodule:: GPy.inference.sgd
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.inference
:members:
:undoc-members:
:show-inheritance:

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@ -1,275 +1,278 @@
parts Package
=============
GPy.kern.parts package
======================
:mod:`parts` Package
--------------------
Submodules
----------
.. automodule:: GPy.kern.parts
:members:
:undoc-members:
:show-inheritance:
:mod:`Brownian` Module
----------------------
GPy.kern.parts.Brownian module
------------------------------
.. automodule:: GPy.kern.parts.Brownian
:members:
:undoc-members:
:show-inheritance:
:mod:`Matern32` Module
----------------------
GPy.kern.parts.Matern32 module
------------------------------
.. automodule:: GPy.kern.parts.Matern32
:members:
:undoc-members:
:show-inheritance:
:mod:`Matern52` Module
----------------------
GPy.kern.parts.Matern52 module
------------------------------
.. automodule:: GPy.kern.parts.Matern52
:members:
:undoc-members:
:show-inheritance:
:mod:`ODE_1` Module
-------------------
GPy.kern.parts.ODE_1 module
---------------------------
.. automodule:: GPy.kern.parts.ODE_1
:members:
:undoc-members:
:show-inheritance:
:mod:`ODE_UY` Module
--------------------
GPy.kern.parts.ODE_UY module
----------------------------
.. automodule:: GPy.kern.parts.ODE_UY
:members:
:undoc-members:
:show-inheritance:
:mod:`bias` Module
------------------
GPy.kern.parts.bias module
--------------------------
.. automodule:: GPy.kern.parts.bias
:members:
:undoc-members:
:show-inheritance:
:mod:`coregionalize` Module
---------------------------
GPy.kern.parts.coregionalize module
-----------------------------------
.. automodule:: GPy.kern.parts.coregionalize
:members:
:undoc-members:
:show-inheritance:
:mod:`eq_ode1` Module
---------------------
GPy.kern.parts.eq_ode1 module
-----------------------------
.. automodule:: GPy.kern.parts.eq_ode1
:members:
:undoc-members:
:show-inheritance:
:mod:`exponential` Module
-------------------------
GPy.kern.parts.exponential module
---------------------------------
.. automodule:: GPy.kern.parts.exponential
:members:
:undoc-members:
:show-inheritance:
:mod:`finite_dimensional` Module
--------------------------------
GPy.kern.parts.finite_dimensional module
----------------------------------------
.. automodule:: GPy.kern.parts.finite_dimensional
:members:
:undoc-members:
:show-inheritance:
:mod:`fixed` Module
-------------------
GPy.kern.parts.fixed module
---------------------------
.. automodule:: GPy.kern.parts.fixed
:members:
:undoc-members:
:show-inheritance:
:mod:`gibbs` Module
-------------------
GPy.kern.parts.gibbs module
---------------------------
.. automodule:: GPy.kern.parts.gibbs
:members:
:undoc-members:
:show-inheritance:
:mod:`hetero` Module
--------------------
GPy.kern.parts.hetero module
----------------------------
.. automodule:: GPy.kern.parts.hetero
:members:
:undoc-members:
:show-inheritance:
:mod:`hierarchical` Module
--------------------------
GPy.kern.parts.hierarchical module
----------------------------------
.. automodule:: GPy.kern.parts.hierarchical
:members:
:undoc-members:
:show-inheritance:
:mod:`independent_outputs` Module
---------------------------------
GPy.kern.parts.independent_outputs module
-----------------------------------------
.. automodule:: GPy.kern.parts.independent_outputs
:members:
:undoc-members:
:show-inheritance:
:mod:`kernpart` Module
----------------------
GPy.kern.parts.kernpart module
------------------------------
.. automodule:: GPy.kern.parts.kernpart
:members:
:undoc-members:
:show-inheritance:
:mod:`linear` Module
--------------------
GPy.kern.parts.linear module
----------------------------
.. automodule:: GPy.kern.parts.linear
:members:
:undoc-members:
:show-inheritance:
:mod:`mlp` Module
-----------------
GPy.kern.parts.mlp module
-------------------------
.. automodule:: GPy.kern.parts.mlp
:members:
:undoc-members:
:show-inheritance:
:mod:`periodic_Matern32` Module
-------------------------------
GPy.kern.parts.periodic_Matern32 module
---------------------------------------
.. automodule:: GPy.kern.parts.periodic_Matern32
:members:
:undoc-members:
:show-inheritance:
:mod:`periodic_Matern52` Module
-------------------------------
GPy.kern.parts.periodic_Matern52 module
---------------------------------------
.. automodule:: GPy.kern.parts.periodic_Matern52
:members:
:undoc-members:
:show-inheritance:
:mod:`periodic_exponential` Module
----------------------------------
GPy.kern.parts.periodic_exponential module
------------------------------------------
.. automodule:: GPy.kern.parts.periodic_exponential
:members:
:undoc-members:
:show-inheritance:
:mod:`poly` Module
------------------
GPy.kern.parts.poly module
--------------------------
.. automodule:: GPy.kern.parts.poly
:members:
:undoc-members:
:show-inheritance:
:mod:`prod` Module
------------------
GPy.kern.parts.prod module
--------------------------
.. automodule:: GPy.kern.parts.prod
:members:
:undoc-members:
:show-inheritance:
:mod:`prod_orthogonal` Module
-----------------------------
GPy.kern.parts.prod_orthogonal module
-------------------------------------
.. automodule:: GPy.kern.parts.prod_orthogonal
:members:
:undoc-members:
:show-inheritance:
:mod:`rational_quadratic` Module
--------------------------------
GPy.kern.parts.rational_quadratic module
----------------------------------------
.. automodule:: GPy.kern.parts.rational_quadratic
:members:
:undoc-members:
:show-inheritance:
:mod:`rbf` Module
-----------------
GPy.kern.parts.rbf module
-------------------------
.. automodule:: GPy.kern.parts.rbf
:members:
:undoc-members:
:show-inheritance:
:mod:`rbf_inv` Module
---------------------
GPy.kern.parts.rbf_inv module
-----------------------------
.. automodule:: GPy.kern.parts.rbf_inv
:members:
:undoc-members:
:show-inheritance:
:mod:`rbfcos` Module
--------------------
GPy.kern.parts.rbfcos module
----------------------------
.. automodule:: GPy.kern.parts.rbfcos
:members:
:undoc-members:
:show-inheritance:
:mod:`spline` Module
--------------------
GPy.kern.parts.spline module
----------------------------
.. automodule:: GPy.kern.parts.spline
:members:
:undoc-members:
:show-inheritance:
:mod:`symmetric` Module
-----------------------
GPy.kern.parts.symmetric module
-------------------------------
.. automodule:: GPy.kern.parts.symmetric
:members:
:undoc-members:
:show-inheritance:
:mod:`sympy_helpers` Module
---------------------------
GPy.kern.parts.sympy_helpers module
-----------------------------------
.. automodule:: GPy.kern.parts.sympy_helpers
:members:
:undoc-members:
:show-inheritance:
:mod:`sympykern` Module
-----------------------
GPy.kern.parts.sympykern module
-------------------------------
.. automodule:: GPy.kern.parts.sympykern
:members:
:undoc-members:
:show-inheritance:
:mod:`white` Module
-------------------
GPy.kern.parts.white module
---------------------------
.. automodule:: GPy.kern.parts.white
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.kern.parts
:members:
:undoc-members:
:show-inheritance:

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@ -1,29 +1,5 @@
kern Package
============
:mod:`kern` Package
-------------------
.. automodule:: GPy.kern
:members:
:undoc-members:
:show-inheritance:
:mod:`constructors` Module
--------------------------
.. automodule:: GPy.kern.constructors
:members:
:undoc-members:
:show-inheritance:
:mod:`kern` Module
------------------
.. automodule:: GPy.kern.kern
:members:
:undoc-members:
:show-inheritance:
GPy.kern package
================
Subpackages
-----------
@ -32,3 +8,30 @@ Subpackages
GPy.kern.parts
Submodules
----------
GPy.kern.constructors module
----------------------------
.. automodule:: GPy.kern.constructors
:members:
:undoc-members:
:show-inheritance:
GPy.kern.kern module
--------------------
.. automodule:: GPy.kern.kern
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.kern
:members:
:undoc-members:
:show-inheritance:

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@ -1,75 +1,78 @@
noise_models Package
====================
GPy.likelihoods.noise_models package
====================================
:mod:`noise_models` Package
---------------------------
Submodules
----------
.. automodule:: GPy.likelihoods.noise_models
:members:
:undoc-members:
:show-inheritance:
:mod:`bernoulli_noise` Module
-----------------------------
GPy.likelihoods.noise_models.bernoulli_noise module
---------------------------------------------------
.. automodule:: GPy.likelihoods.noise_models.bernoulli_noise
:members:
:undoc-members:
:show-inheritance:
:mod:`exponential_noise` Module
-------------------------------
GPy.likelihoods.noise_models.exponential_noise module
-----------------------------------------------------
.. automodule:: GPy.likelihoods.noise_models.exponential_noise
:members:
:undoc-members:
:show-inheritance:
:mod:`gamma_noise` Module
-------------------------
GPy.likelihoods.noise_models.gamma_noise module
-----------------------------------------------
.. automodule:: GPy.likelihoods.noise_models.gamma_noise
:members:
:undoc-members:
:show-inheritance:
:mod:`gaussian_noise` Module
----------------------------
GPy.likelihoods.noise_models.gaussian_noise module
--------------------------------------------------
.. automodule:: GPy.likelihoods.noise_models.gaussian_noise
:members:
:undoc-members:
:show-inheritance:
:mod:`gp_transformations` Module
--------------------------------
GPy.likelihoods.noise_models.gp_transformations module
------------------------------------------------------
.. automodule:: GPy.likelihoods.noise_models.gp_transformations
:members:
:undoc-members:
:show-inheritance:
:mod:`noise_distributions` Module
---------------------------------
GPy.likelihoods.noise_models.noise_distributions module
-------------------------------------------------------
.. automodule:: GPy.likelihoods.noise_models.noise_distributions
:members:
:undoc-members:
:show-inheritance:
:mod:`poisson_noise` Module
---------------------------
GPy.likelihoods.noise_models.poisson_noise module
-------------------------------------------------
.. automodule:: GPy.likelihoods.noise_models.poisson_noise
:members:
:undoc-members:
:show-inheritance:
:mod:`student_t_noise` Module
-----------------------------
GPy.likelihoods.noise_models.student_t_noise module
---------------------------------------------------
.. automodule:: GPy.likelihoods.noise_models.student_t_noise
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.likelihoods.noise_models
:members:
:undoc-members:
:show-inheritance:

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@ -1,69 +1,5 @@
likelihoods Package
===================
:mod:`likelihoods` Package
--------------------------
.. automodule:: GPy.likelihoods
:members:
:undoc-members:
:show-inheritance:
:mod:`ep` Module
----------------
.. automodule:: GPy.likelihoods.ep
:members:
:undoc-members:
:show-inheritance:
:mod:`ep_mixed_noise` Module
----------------------------
.. automodule:: GPy.likelihoods.ep_mixed_noise
:members:
:undoc-members:
:show-inheritance:
:mod:`gaussian` Module
----------------------
.. automodule:: GPy.likelihoods.gaussian
:members:
:undoc-members:
:show-inheritance:
:mod:`gaussian_mixed_noise` Module
----------------------------------
.. automodule:: GPy.likelihoods.gaussian_mixed_noise
:members:
:undoc-members:
:show-inheritance:
:mod:`laplace` Module
---------------------
.. automodule:: GPy.likelihoods.laplace
:members:
:undoc-members:
:show-inheritance:
:mod:`likelihood` Module
------------------------
.. automodule:: GPy.likelihoods.likelihood
:members:
:undoc-members:
:show-inheritance:
:mod:`noise_model_constructors` Module
--------------------------------------
.. automodule:: GPy.likelihoods.noise_model_constructors
:members:
:undoc-members:
:show-inheritance:
GPy.likelihoods package
=======================
Subpackages
-----------
@ -72,3 +8,70 @@ Subpackages
GPy.likelihoods.noise_models
Submodules
----------
GPy.likelihoods.ep module
-------------------------
.. automodule:: GPy.likelihoods.ep
:members:
:undoc-members:
:show-inheritance:
GPy.likelihoods.ep_mixed_noise module
-------------------------------------
.. automodule:: GPy.likelihoods.ep_mixed_noise
:members:
:undoc-members:
:show-inheritance:
GPy.likelihoods.gaussian module
-------------------------------
.. automodule:: GPy.likelihoods.gaussian
:members:
:undoc-members:
:show-inheritance:
GPy.likelihoods.gaussian_mixed_noise module
-------------------------------------------
.. automodule:: GPy.likelihoods.gaussian_mixed_noise
:members:
:undoc-members:
:show-inheritance:
GPy.likelihoods.laplace module
------------------------------
.. automodule:: GPy.likelihoods.laplace
:members:
:undoc-members:
:show-inheritance:
GPy.likelihoods.likelihood module
---------------------------------
.. automodule:: GPy.likelihoods.likelihood
:members:
:undoc-members:
:show-inheritance:
GPy.likelihoods.noise_model_constructors module
-----------------------------------------------
.. automodule:: GPy.likelihoods.noise_model_constructors
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.likelihoods
:members:
:undoc-members:
:show-inheritance:

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@ -1,35 +1,38 @@
mappings Package
================
GPy.mappings package
====================
:mod:`mappings` Package
-----------------------
Submodules
----------
.. automodule:: GPy.mappings
:members:
:undoc-members:
:show-inheritance:
:mod:`kernel` Module
--------------------
GPy.mappings.kernel module
--------------------------
.. automodule:: GPy.mappings.kernel
:members:
:undoc-members:
:show-inheritance:
:mod:`linear` Module
--------------------
GPy.mappings.linear module
--------------------------
.. automodule:: GPy.mappings.linear
:members:
:undoc-members:
:show-inheritance:
:mod:`mlp` Module
-----------------
GPy.mappings.mlp module
-----------------------
.. automodule:: GPy.mappings.mlp
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.mappings
:members:
:undoc-members:
:show-inheritance:

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@ -1,131 +1,134 @@
models_modules Package
======================
GPy.models_modules package
==========================
:mod:`models_modules` Package
-----------------------------
Submodules
----------
.. automodule:: GPy.models_modules
:members:
:undoc-members:
:show-inheritance:
:mod:`bayesian_gplvm` Module
----------------------------
GPy.models_modules.bayesian_gplvm module
----------------------------------------
.. automodule:: GPy.models_modules.bayesian_gplvm
:members:
:undoc-members:
:show-inheritance:
:mod:`bcgplvm` Module
---------------------
GPy.models_modules.bcgplvm module
---------------------------------
.. automodule:: GPy.models_modules.bcgplvm
:members:
:undoc-members:
:show-inheritance:
:mod:`fitc_classification` Module
---------------------------------
GPy.models_modules.fitc_classification module
---------------------------------------------
.. automodule:: GPy.models_modules.fitc_classification
:members:
:undoc-members:
:show-inheritance:
:mod:`gp_classification` Module
-------------------------------
GPy.models_modules.gp_classification module
-------------------------------------------
.. automodule:: GPy.models_modules.gp_classification
:members:
:undoc-members:
:show-inheritance:
:mod:`gp_multioutput_regression` Module
---------------------------------------
GPy.models_modules.gp_multioutput_regression module
---------------------------------------------------
.. automodule:: GPy.models_modules.gp_multioutput_regression
:members:
:undoc-members:
:show-inheritance:
:mod:`gp_regression` Module
---------------------------
GPy.models_modules.gp_regression module
---------------------------------------
.. automodule:: GPy.models_modules.gp_regression
:members:
:undoc-members:
:show-inheritance:
:mod:`gplvm` Module
-------------------
GPy.models_modules.gplvm module
-------------------------------
.. automodule:: GPy.models_modules.gplvm
:members:
:undoc-members:
:show-inheritance:
:mod:`gradient_checker` Module
------------------------------
GPy.models_modules.gradient_checker module
------------------------------------------
.. automodule:: GPy.models_modules.gradient_checker
:members:
:undoc-members:
:show-inheritance:
:mod:`mrd` Module
-----------------
GPy.models_modules.mrd module
-----------------------------
.. automodule:: GPy.models_modules.mrd
:members:
:undoc-members:
:show-inheritance:
:mod:`sparse_gp_classification` Module
--------------------------------------
GPy.models_modules.sparse_gp_classification module
--------------------------------------------------
.. automodule:: GPy.models_modules.sparse_gp_classification
:members:
:undoc-members:
:show-inheritance:
:mod:`sparse_gp_multioutput_regression` Module
----------------------------------------------
GPy.models_modules.sparse_gp_multioutput_regression module
----------------------------------------------------------
.. automodule:: GPy.models_modules.sparse_gp_multioutput_regression
:members:
:undoc-members:
:show-inheritance:
:mod:`sparse_gp_regression` Module
----------------------------------
GPy.models_modules.sparse_gp_regression module
----------------------------------------------
.. automodule:: GPy.models_modules.sparse_gp_regression
:members:
:undoc-members:
:show-inheritance:
:mod:`sparse_gplvm` Module
--------------------------
GPy.models_modules.sparse_gplvm module
--------------------------------------
.. automodule:: GPy.models_modules.sparse_gplvm
:members:
:undoc-members:
:show-inheritance:
:mod:`svigp_regression` Module
------------------------------
GPy.models_modules.svigp_regression module
------------------------------------------
.. automodule:: GPy.models_modules.svigp_regression
:members:
:undoc-members:
:show-inheritance:
:mod:`warped_gp` Module
-----------------------
GPy.models_modules.warped_gp module
-----------------------------------
.. automodule:: GPy.models_modules.warped_gp
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.models_modules
:members:
:undoc-members:
:show-inheritance:

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@ -1,22 +1,6 @@
GPy Package
GPy package
===========
:mod:`GPy` Package
------------------
.. automodule:: GPy.__init__
:members:
:undoc-members:
:show-inheritance:
:mod:`models` Module
--------------------
.. automodule:: GPy.models
:members:
:undoc-members:
:show-inheritance:
Subpackages
-----------
@ -32,3 +16,22 @@ Subpackages
GPy.testing
GPy.util
Submodules
----------
GPy.models module
-----------------
.. automodule:: GPy.models
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy
:members:
:undoc-members:
:show-inheritance:

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@ -1,131 +1,134 @@
testing Package
===============
GPy.testing package
===================
:mod:`testing` Package
----------------------
Submodules
----------
.. automodule:: GPy.testing
:members:
:undoc-members:
:show-inheritance:
:mod:`bcgplvm_tests` Module
---------------------------
GPy.testing.bcgplvm_tests module
--------------------------------
.. automodule:: GPy.testing.bcgplvm_tests
:members:
:undoc-members:
:show-inheritance:
:mod:`bgplvm_tests` Module
--------------------------
GPy.testing.bgplvm_tests module
-------------------------------
.. automodule:: GPy.testing.bgplvm_tests
:members:
:undoc-members:
:show-inheritance:
:mod:`cgd_tests` Module
-----------------------
GPy.testing.cgd_tests module
----------------------------
.. automodule:: GPy.testing.cgd_tests
:members:
:undoc-members:
:show-inheritance:
:mod:`examples_tests` Module
----------------------------
GPy.testing.examples_tests module
---------------------------------
.. automodule:: GPy.testing.examples_tests
:members:
:undoc-members:
:show-inheritance:
:mod:`gp_transformation_tests` Module
-------------------------------------
GPy.testing.gp_transformation_tests module
------------------------------------------
.. automodule:: GPy.testing.gp_transformation_tests
:members:
:undoc-members:
:show-inheritance:
:mod:`gplvm_tests` Module
-------------------------
GPy.testing.gplvm_tests module
------------------------------
.. automodule:: GPy.testing.gplvm_tests
:members:
:undoc-members:
:show-inheritance:
:mod:`kernel_tests` Module
--------------------------
GPy.testing.kernel_tests module
-------------------------------
.. automodule:: GPy.testing.kernel_tests
:members:
:undoc-members:
:show-inheritance:
:mod:`likelihoods_tests` Module
-------------------------------
GPy.testing.likelihoods_tests module
------------------------------------
.. automodule:: GPy.testing.likelihoods_tests
:members:
:undoc-members:
:show-inheritance:
:mod:`mapping_tests` Module
---------------------------
GPy.testing.mapping_tests module
--------------------------------
.. automodule:: GPy.testing.mapping_tests
:members:
:undoc-members:
:show-inheritance:
:mod:`mrd_tests` Module
-----------------------
GPy.testing.mrd_tests module
----------------------------
.. automodule:: GPy.testing.mrd_tests
:members:
:undoc-members:
:show-inheritance:
:mod:`prior_tests` Module
-------------------------
GPy.testing.prior_tests module
------------------------------
.. automodule:: GPy.testing.prior_tests
:members:
:undoc-members:
:show-inheritance:
:mod:`psi_stat_expectation_tests` Module
----------------------------------------
GPy.testing.psi_stat_expectation_tests module
---------------------------------------------
.. automodule:: GPy.testing.psi_stat_expectation_tests
:members:
:undoc-members:
:show-inheritance:
:mod:`psi_stat_gradient_tests` Module
-------------------------------------
GPy.testing.psi_stat_gradient_tests module
------------------------------------------
.. automodule:: GPy.testing.psi_stat_gradient_tests
:members:
:undoc-members:
:show-inheritance:
:mod:`sparse_gplvm_tests` Module
--------------------------------
GPy.testing.sparse_gplvm_tests module
-------------------------------------
.. automodule:: GPy.testing.sparse_gplvm_tests
:members:
:undoc-members:
:show-inheritance:
:mod:`unit_tests` Module
------------------------
GPy.testing.unit_tests module
-----------------------------
.. automodule:: GPy.testing.unit_tests
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.testing
:members:
:undoc-members:
:show-inheritance:

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@ -1,27 +1,30 @@
controllers Package
===================
GPy.util.latent_space_visualizations.controllers package
========================================================
:mod:`controllers` Package
--------------------------
Submodules
----------
.. automodule:: GPy.util.latent_space_visualizations.controllers
:members:
:undoc-members:
:show-inheritance:
:mod:`axis_event_controller` Module
-----------------------------------
GPy.util.latent_space_visualizations.controllers.axis_event_controller module
-----------------------------------------------------------------------------
.. automodule:: GPy.util.latent_space_visualizations.controllers.axis_event_controller
:members:
:undoc-members:
:show-inheritance:
:mod:`imshow_controller` Module
-------------------------------
GPy.util.latent_space_visualizations.controllers.imshow_controller module
-------------------------------------------------------------------------
.. automodule:: GPy.util.latent_space_visualizations.controllers.imshow_controller
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.util.latent_space_visualizations.controllers
:members:
:undoc-members:
:show-inheritance:

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@ -1,13 +1,5 @@
latent_space_visualizations Package
===================================
:mod:`latent_space_visualizations` Package
------------------------------------------
.. automodule:: GPy.util.latent_space_visualizations
:members:
:undoc-members:
:show-inheritance:
GPy.util.latent_space_visualizations package
============================================
Subpackages
-----------
@ -15,5 +7,11 @@ Subpackages
.. toctree::
GPy.util.latent_space_visualizations.controllers
GPy.util.latent_space_visualizations.views
Module contents
---------------
.. automodule:: GPy.util.latent_space_visualizations
:members:
:undoc-members:
:show-inheritance:

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@ -1,181 +1,5 @@
util Package
============
:mod:`util` Package
-------------------
.. automodule:: GPy.util
:members:
:undoc-members:
:show-inheritance:
:mod:`Tango` Module
-------------------
.. automodule:: GPy.util.Tango
:members:
:undoc-members:
:show-inheritance:
:mod:`block_matrices` Module
----------------------------
.. automodule:: GPy.util.block_matrices
:members:
:undoc-members:
:show-inheritance:
:mod:`classification` Module
----------------------------
.. automodule:: GPy.util.classification
:members:
:undoc-members:
:show-inheritance:
:mod:`config` Module
--------------------
.. automodule:: GPy.util.config
:members:
:undoc-members:
:show-inheritance:
:mod:`datasets` Module
----------------------
.. automodule:: GPy.util.datasets
:members:
:undoc-members:
:show-inheritance:
:mod:`decorators` Module
------------------------
.. automodule:: GPy.util.decorators
:members:
:undoc-members:
:show-inheritance:
:mod:`erfcx` Module
-------------------
.. automodule:: GPy.util.erfcx
:members:
:undoc-members:
:show-inheritance:
:mod:`linalg` Module
--------------------
.. automodule:: GPy.util.linalg
:members:
:undoc-members:
:show-inheritance:
:mod:`ln_diff_erfs` Module
--------------------------
.. automodule:: GPy.util.ln_diff_erfs
:members:
:undoc-members:
:show-inheritance:
:mod:`misc` Module
------------------
.. automodule:: GPy.util.misc
:members:
:undoc-members:
:show-inheritance:
:mod:`mocap` Module
-------------------
.. automodule:: GPy.util.mocap
:members:
:undoc-members:
:show-inheritance:
:mod:`multioutput` Module
-------------------------
.. automodule:: GPy.util.multioutput
:members:
:undoc-members:
:show-inheritance:
:mod:`netpbmfile` Module
------------------------
.. automodule:: GPy.util.netpbmfile
:members:
:undoc-members:
:show-inheritance:
:mod:`pca` Module
-----------------
.. automodule:: GPy.util.pca
:members:
:undoc-members:
:show-inheritance:
:mod:`plot` Module
------------------
.. automodule:: GPy.util.plot
:members:
:undoc-members:
:show-inheritance:
:mod:`plot_latent` Module
-------------------------
.. automodule:: GPy.util.plot_latent
:members:
:undoc-members:
:show-inheritance:
:mod:`squashers` Module
-----------------------
.. automodule:: GPy.util.squashers
:members:
:undoc-members:
:show-inheritance:
:mod:`symbolic` Module
----------------------
.. automodule:: GPy.util.symbolic
:members:
:undoc-members:
:show-inheritance:
:mod:`univariate_Gaussian` Module
---------------------------------
.. automodule:: GPy.util.univariate_Gaussian
:members:
:undoc-members:
:show-inheritance:
:mod:`visualize` Module
-----------------------
.. automodule:: GPy.util.visualize
:members:
:undoc-members:
:show-inheritance:
:mod:`warping_functions` Module
-------------------------------
.. automodule:: GPy.util.warping_functions
:members:
:undoc-members:
:show-inheritance:
GPy.util package
================
Subpackages
-----------
@ -184,3 +8,190 @@ Subpackages
GPy.util.latent_space_visualizations
Submodules
----------
GPy.util.Tango module
---------------------
.. automodule:: GPy.util.Tango
:members:
:undoc-members:
:show-inheritance:
GPy.util.block_matrices module
------------------------------
.. automodule:: GPy.util.block_matrices
:members:
:undoc-members:
:show-inheritance:
GPy.util.classification module
------------------------------
.. automodule:: GPy.util.classification
:members:
:undoc-members:
:show-inheritance:
GPy.util.config module
----------------------
.. automodule:: GPy.util.config
:members:
:undoc-members:
:show-inheritance:
GPy.util.datasets module
------------------------
.. automodule:: GPy.util.datasets
:members:
:undoc-members:
:show-inheritance:
GPy.util.decorators module
--------------------------
.. automodule:: GPy.util.decorators
:members:
:undoc-members:
:show-inheritance:
GPy.util.diag module
--------------------
.. automodule:: GPy.util.diag
:members:
:undoc-members:
:show-inheritance:
GPy.util.erfcx module
---------------------
.. automodule:: GPy.util.erfcx
:members:
:undoc-members:
:show-inheritance:
GPy.util.linalg module
----------------------
.. automodule:: GPy.util.linalg
:members:
:undoc-members:
:show-inheritance:
GPy.util.ln_diff_erfs module
----------------------------
.. automodule:: GPy.util.ln_diff_erfs
:members:
:undoc-members:
:show-inheritance:
GPy.util.misc module
--------------------
.. automodule:: GPy.util.misc
:members:
:undoc-members:
:show-inheritance:
GPy.util.mocap module
---------------------
.. automodule:: GPy.util.mocap
:members:
:undoc-members:
:show-inheritance:
GPy.util.multioutput module
---------------------------
.. automodule:: GPy.util.multioutput
:members:
:undoc-members:
:show-inheritance:
GPy.util.netpbmfile module
--------------------------
.. automodule:: GPy.util.netpbmfile
:members:
:undoc-members:
:show-inheritance:
GPy.util.plot module
--------------------
.. automodule:: GPy.util.plot
:members:
:undoc-members:
:show-inheritance:
GPy.util.plot_latent module
---------------------------
.. automodule:: GPy.util.plot_latent
:members:
:undoc-members:
:show-inheritance:
GPy.util.squashers module
-------------------------
.. automodule:: GPy.util.squashers
:members:
:undoc-members:
:show-inheritance:
GPy.util.subarray_and_sorting module
------------------------------------
.. automodule:: GPy.util.subarray_and_sorting
:members:
:undoc-members:
:show-inheritance:
GPy.util.symbolic module
------------------------
.. automodule:: GPy.util.symbolic
:members:
:undoc-members:
:show-inheritance:
GPy.util.univariate_Gaussian module
-----------------------------------
.. automodule:: GPy.util.univariate_Gaussian
:members:
:undoc-members:
:show-inheritance:
GPy.util.visualize module
-------------------------
.. automodule:: GPy.util.visualize
:members:
:undoc-members:
:show-inheritance:
GPy.util.warping_functions module
---------------------------------
.. automodule:: GPy.util.warping_functions
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.util
:members:
:undoc-members:
:show-inheritance: