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added in documentation the current status of kernel implementation

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Nicolas 2013-03-11 12:40:29 +00:00
parent e9c84484c0
commit e511bb69cf
5 changed files with 70 additions and 17 deletions
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doc/GPy.examples.rst
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@ -73,6 +73,22 @@ examples Package
:undoc-members: :undoc-members:
:show-inheritance: :show-inheritance:
:mod:`tuto_GP_regression` Module
--------------------------------
.. automodule:: GPy.examples.tuto_GP_regression
:members:
:undoc-members:
:show-inheritance:
:mod:`tuto_kernel_overview` Module
----------------------------------
.. automodule:: GPy.examples.tuto_kernel_overview
:members:
:undoc-members:
:show-inheritance:
:mod:`uncertain_input_GP_regression_demo` Module :mod:`uncertain_input_GP_regression_demo` Module
------------------------------------------------ ------------------------------------------------

28
doc/GPy.kern.rst
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@ -49,6 +49,14 @@ kern Package
:undoc-members: :undoc-members:
:show-inheritance: :show-inheritance:
:mod:`coregionalise` Module
---------------------------
.. automodule:: GPy.kern.coregionalise
:members:
:undoc-members:
:show-inheritance:
:mod:`exponential` Module :mod:`exponential` Module
------------------------- -------------------------
@ -113,18 +121,18 @@ kern Package
:undoc-members: :undoc-members:
:show-inheritance: :show-inheritance:
:mod:`product` Module :mod:`prod` Module
--------------------- ------------------
.. automodule:: GPy.kern.product .. automodule:: GPy.kern.prod
:members: :members:
:undoc-members: :undoc-members:
:show-inheritance: :show-inheritance:
:mod:`product_orthogonal` Module :mod:`prod_orthogonal` Module
-------------------------------- -----------------------------
.. automodule:: GPy.kern.product_orthogonal .. automodule:: GPy.kern.prod_orthogonal
:members: :members:
:undoc-members: :undoc-members:
:show-inheritance: :show-inheritance:
@ -145,6 +153,14 @@ kern Package
:undoc-members: :undoc-members:
:show-inheritance: :show-inheritance:
:mod:`symmetric` Module
-----------------------
.. automodule:: GPy.kern.symmetric
:members:
:undoc-members:
:show-inheritance:
:mod:`sympykern` Module :mod:`sympykern` Module
----------------------- -----------------------

41
doc/kernel_implementation.rst
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@ -3,15 +3,36 @@
List of implemented kernels List of implemented kernels
*************************** ***************************
The :math:`\checkmark` symbol represents the functions that have been implemented for each kernel. The following table shows the implemented kernels in GPy and gives the details of the implemented function for each kernel.
.. |tick| ==================== =========== ====== ======= =========== =============== ======= =========== ====== ====== =======
NAME get/set K Kdiag dK_dtheta dKdiag_dtheta dK_dX dKdiag_dX psi0 psi1 psi2
==================== =========== ====== ======= =========== =============== ======= =========== ====== ====== =======
bias |tick| |tick| |tick| |tick| |tick| |tick| |tick| |tick| |tick| |tick|
-------------------- ----------- ------ ------- ----------- --------------- ------- ----------- ------ ------ -------
Brownian |tick| |tick| |tick| |tick| |tick| |tick| |tick|
-------------------- ----------- ------ ------- ----------- --------------- ------- ----------- ------ ------ -------
exponential |tick| |tick| |tick| |tick| |tick| |tick| |tick|
-------------------- ----------- ------ ------- ----------- --------------- ------- ----------- ------ ------ -------
finite_dimensional |tick| |tick| |tick| |tick| |tick|
-------------------- ----------- ------ ------- ----------- --------------- ------- ----------- ------ ------ -------
linear |tick| |tick| |tick| |tick| |tick| |tick| |tick| |tick| |tick|
-------------------- ----------- ------ ------- ----------- --------------- ------- ----------- ------ ------ -------
Matern32 |tick| |tick| |tick| |tick| |tick| |tick| |tick|
-------------------- ----------- ------ ------- ----------- --------------- ------- ----------- ------ ------ -------
Matern52 |tick| |tick| |tick| |tick| |tick| |tick| |tick|
-------------------- ----------- ------ ------- ----------- --------------- ------- ----------- ------ ------ -------
periodic_exponential |tick| |tick| |tick| |tick| |tick|
-------------------- ----------- ------ ------- ----------- --------------- ------- ----------- ------ ------ -------
periodic_Matern32 |tick| |tick| |tick| |tick| |tick|
-------------------- ----------- ------ ------- ----------- --------------- ------- ----------- ------ ------ -------
periodic_Matern52 |tick| |tick| |tick| |tick| |tick|
-------------------- ----------- ------ ------- ----------- --------------- ------- ----------- ------ ------ -------
rbf |tick| |tick| |tick| |tick| |tick| |tick| |tick| |tick| |tick| |tick|
-------------------- ----------- ------ ------- ----------- --------------- ------- ----------- ------ ------ -------
spline |tick| |tick| |tick| |tick| |tick| |tick|
-------------------- ----------- ------ ------- ----------- --------------- ------- ----------- ------ ------ -------
white |tick| |tick| |tick| |tick| |tick| |tick| |tick| |tick| |tick| |tick|
==================== =========== ====== ======= =========== =============== ======= =========== ====== ====== =======
.. |tick| image:: tick.png .. |tick| image:: Figures/tick.png
====== =========== === ======= =========== =============== ======= =========== ====== ====== =======
NAME get/set K Kdiag dK_dtheta dKdiag_dtheta dK_dX dKdiag_dX psi0 psi1 psi2
====== =========== === ======= =========== =============== ======= =========== ====== ====== =======
rbf \\checkmark y
====== =========== === ======= =========== =============== ======= =========== ====== ====== =======

2
doc/tuto_kernel_overview.rst
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@ -39,7 +39,7 @@ return::
Implemented kernels Implemented kernels
=================== ===================
Many kernels are already implemented in GPy. A comprehensive list can be found `here <kernel_implementation.html>`_ . The following figure gives a summary of most of them: Many kernels are already implemented in GPy. A comprehensive list can be found `here <kernel_implementation.html>`_ and the following figure gives a summary of most of them:
.. figure:: Figures/tuto_kern_overview_allkern.png .. figure:: Figures/tuto_kern_overview_allkern.png
:align: center :align: center