diff --git a/GPy/examples/regression.py b/GPy/examples/regression.py index 7ad23d24..6c22b68e 100644 --- a/GPy/examples/regression.py +++ b/GPy/examples/regression.py @@ -41,10 +41,6 @@ def rogers_girolami_olympics(): print(m) return m -def della_gatta_TRP63_gene_expression(number=942): - """Run a standard Gaussian process regression on the della Gatta et al TRP63 Gene Expression data set for a given gene number.""" - - def toy_rbf_1d_50(): """Run a simple demonstration of a standard Gaussian process fitting it to data sampled from an RBF covariance.""" data = GPy.util.datasets.toy_rbf_1d_50() @@ -127,7 +123,7 @@ def coregionalisation_toy(): m.constrain_fixed('rbf_var',1.) m.constrain_positive('kappa') m.ensure_default_constraints() - #m.optimize() + m.optimize() pb.figure() Xtest1 = np.hstack((np.linspace(0,9,100)[:,None],np.zeros((100,1)))) @@ -155,7 +151,6 @@ def coregionalisation_sparse(): M = 40 Z = np.hstack((np.random.rand(M,1)*8,np.random.randint(0,2,M)[:,None])) - #Z = X.copy() k1 = GPy.kern.rbf(1) k2 = GPy.kern.coregionalise(2,2) @@ -181,7 +176,6 @@ def coregionalisation_sparse(): y = pb.ylim()[0] pb.plot(Z[:,0][Z[:,1]==0],np.zeros(np.sum(Z[:,1]==0))+y,'r|',mew=2) pb.plot(Z[:,0][Z[:,1]==1],np.zeros(np.sum(Z[:,1]==1))+y,'g|',mew=2) - print Z return m