From e0de2805b62b01f20a884611b9dca9979583728b Mon Sep 17 00:00:00 2001 From: Alexander Pitchford Date: Fri, 19 Oct 2018 09:11:31 +0100 Subject: [PATCH] add missing colons and fix indentation --- GPy/models/state_space_cython.c | 28783 +++++++++++++++++++--------- GPy/models/state_space_cython.pyx | 8 +- 2 files changed, 19531 insertions(+), 9260 deletions(-) diff --git a/GPy/models/state_space_cython.c b/GPy/models/state_space_cython.c index 3e6f3513..b23832f1 100644 --- a/GPy/models/state_space_cython.c +++ b/GPy/models/state_space_cython.c @@ -1,36 +1,31 @@ -/* Generated by Cython 0.22 */ +/* Generated by Cython 0.29 */ /* BEGIN: Cython Metadata { "distutils": { - "depends": [] - } + "depends": [], + "name": "GPy.models.state_space_cython", + "sources": [ + "/home/agp1/GitHub/ajgpitch/GPy/GPy/models/state_space_cython.pyx" + ] + }, + "module_name": "GPy.models.state_space_cython" } END: Cython Metadata */ #define PY_SSIZE_T_CLEAN -#ifndef CYTHON_USE_PYLONG_INTERNALS -#ifdef PYLONG_BITS_IN_DIGIT -#define CYTHON_USE_PYLONG_INTERNALS 0 -#else -#include "pyconfig.h" -#ifdef PYLONG_BITS_IN_DIGIT -#define CYTHON_USE_PYLONG_INTERNALS 1 -#else -#define CYTHON_USE_PYLONG_INTERNALS 0 -#endif -#endif -#endif #include "Python.h" #ifndef Py_PYTHON_H #error Python headers needed to compile C extensions, please install development version of Python. -#elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03020000) - #error Cython requires Python 2.6+ or Python 3.2+. +#elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03030000) + #error Cython requires Python 2.6+ or Python 3.3+. #else -#define CYTHON_ABI "0_22" +#define CYTHON_ABI "0_29" +#define CYTHON_HEX_VERSION 0x001D00F0 +#define CYTHON_FUTURE_DIVISION 0 #include #ifndef offsetof -#define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) + #define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) #endif #if !defined(WIN32) && !defined(MS_WINDOWS) #ifndef __stdcall @@ -49,6 +44,12 @@ END: Cython Metadata */ #ifndef DL_EXPORT #define DL_EXPORT(t) t #endif +#define __PYX_COMMA , +#ifndef HAVE_LONG_LONG + #if PY_VERSION_HEX >= 0x02070000 + #define HAVE_LONG_LONG + #endif +#endif #ifndef PY_LONG_LONG #define PY_LONG_LONG LONG_LONG #endif @@ -56,77 +57,459 @@ END: Cython Metadata */ #define Py_HUGE_VAL HUGE_VAL #endif #ifdef PYPY_VERSION -#define CYTHON_COMPILING_IN_PYPY 1 -#define CYTHON_COMPILING_IN_CPYTHON 0 + #define CYTHON_COMPILING_IN_PYPY 1 + #define CYTHON_COMPILING_IN_PYSTON 0 + #define CYTHON_COMPILING_IN_CPYTHON 0 + #undef CYTHON_USE_TYPE_SLOTS + #define CYTHON_USE_TYPE_SLOTS 0 + #undef CYTHON_USE_PYTYPE_LOOKUP + #define CYTHON_USE_PYTYPE_LOOKUP 0 + #if PY_VERSION_HEX < 0x03050000 + #undef CYTHON_USE_ASYNC_SLOTS + #define CYTHON_USE_ASYNC_SLOTS 0 + #elif !defined(CYTHON_USE_ASYNC_SLOTS) + #define CYTHON_USE_ASYNC_SLOTS 1 + #endif + #undef CYTHON_USE_PYLIST_INTERNALS + #define CYTHON_USE_PYLIST_INTERNALS 0 + #undef CYTHON_USE_UNICODE_INTERNALS + #define CYTHON_USE_UNICODE_INTERNALS 0 + #undef CYTHON_USE_UNICODE_WRITER + #define CYTHON_USE_UNICODE_WRITER 0 + #undef CYTHON_USE_PYLONG_INTERNALS + #define CYTHON_USE_PYLONG_INTERNALS 0 + #undef CYTHON_AVOID_BORROWED_REFS + #define CYTHON_AVOID_BORROWED_REFS 1 + #undef CYTHON_ASSUME_SAFE_MACROS + #define CYTHON_ASSUME_SAFE_MACROS 0 + #undef CYTHON_UNPACK_METHODS + #define CYTHON_UNPACK_METHODS 0 + #undef CYTHON_FAST_THREAD_STATE + #define CYTHON_FAST_THREAD_STATE 0 + #undef CYTHON_FAST_PYCALL + #define CYTHON_FAST_PYCALL 0 + #undef CYTHON_PEP489_MULTI_PHASE_INIT + #define CYTHON_PEP489_MULTI_PHASE_INIT 0 + #undef CYTHON_USE_TP_FINALIZE + #define CYTHON_USE_TP_FINALIZE 0 + #undef CYTHON_USE_DICT_VERSIONS + #define CYTHON_USE_DICT_VERSIONS 0 + #undef CYTHON_USE_EXC_INFO_STACK + #define CYTHON_USE_EXC_INFO_STACK 0 +#elif defined(PYSTON_VERSION) + #define CYTHON_COMPILING_IN_PYPY 0 + #define CYTHON_COMPILING_IN_PYSTON 1 + #define CYTHON_COMPILING_IN_CPYTHON 0 + #ifndef CYTHON_USE_TYPE_SLOTS + #define CYTHON_USE_TYPE_SLOTS 1 + #endif + #undef CYTHON_USE_PYTYPE_LOOKUP + #define CYTHON_USE_PYTYPE_LOOKUP 0 + #undef CYTHON_USE_ASYNC_SLOTS + #define CYTHON_USE_ASYNC_SLOTS 0 + #undef CYTHON_USE_PYLIST_INTERNALS + #define CYTHON_USE_PYLIST_INTERNALS 0 + #ifndef CYTHON_USE_UNICODE_INTERNALS + #define CYTHON_USE_UNICODE_INTERNALS 1 + #endif + #undef CYTHON_USE_UNICODE_WRITER + #define CYTHON_USE_UNICODE_WRITER 0 + #undef CYTHON_USE_PYLONG_INTERNALS + #define CYTHON_USE_PYLONG_INTERNALS 0 + #ifndef CYTHON_AVOID_BORROWED_REFS + #define CYTHON_AVOID_BORROWED_REFS 0 + #endif + #ifndef CYTHON_ASSUME_SAFE_MACROS + #define CYTHON_ASSUME_SAFE_MACROS 1 + #endif + #ifndef CYTHON_UNPACK_METHODS + #define CYTHON_UNPACK_METHODS 1 + #endif + #undef CYTHON_FAST_THREAD_STATE + #define CYTHON_FAST_THREAD_STATE 0 + #undef CYTHON_FAST_PYCALL + #define CYTHON_FAST_PYCALL 0 + #undef CYTHON_PEP489_MULTI_PHASE_INIT + #define CYTHON_PEP489_MULTI_PHASE_INIT 0 + #undef CYTHON_USE_TP_FINALIZE + #define CYTHON_USE_TP_FINALIZE 0 + #undef CYTHON_USE_DICT_VERSIONS + #define CYTHON_USE_DICT_VERSIONS 0 + #undef CYTHON_USE_EXC_INFO_STACK + #define CYTHON_USE_EXC_INFO_STACK 0 #else -#define CYTHON_COMPILING_IN_PYPY 0 -#define CYTHON_COMPILING_IN_CPYTHON 1 + #define CYTHON_COMPILING_IN_PYPY 0 + #define CYTHON_COMPILING_IN_PYSTON 0 + #define CYTHON_COMPILING_IN_CPYTHON 1 + #ifndef CYTHON_USE_TYPE_SLOTS + #define CYTHON_USE_TYPE_SLOTS 1 + #endif + #if PY_VERSION_HEX < 0x02070000 + #undef CYTHON_USE_PYTYPE_LOOKUP + #define CYTHON_USE_PYTYPE_LOOKUP 0 + #elif !defined(CYTHON_USE_PYTYPE_LOOKUP) + #define CYTHON_USE_PYTYPE_LOOKUP 1 + #endif + #if PY_MAJOR_VERSION < 3 + #undef CYTHON_USE_ASYNC_SLOTS + #define CYTHON_USE_ASYNC_SLOTS 0 + #elif !defined(CYTHON_USE_ASYNC_SLOTS) + #define CYTHON_USE_ASYNC_SLOTS 1 + #endif + #if PY_VERSION_HEX < 0x02070000 + #undef CYTHON_USE_PYLONG_INTERNALS + #define CYTHON_USE_PYLONG_INTERNALS 0 + #elif !defined(CYTHON_USE_PYLONG_INTERNALS) + #define CYTHON_USE_PYLONG_INTERNALS 1 + #endif + #ifndef CYTHON_USE_PYLIST_INTERNALS + #define CYTHON_USE_PYLIST_INTERNALS 1 + #endif + #ifndef CYTHON_USE_UNICODE_INTERNALS + #define CYTHON_USE_UNICODE_INTERNALS 1 + #endif + #if PY_VERSION_HEX < 0x030300F0 + #undef CYTHON_USE_UNICODE_WRITER + #define CYTHON_USE_UNICODE_WRITER 0 + #elif !defined(CYTHON_USE_UNICODE_WRITER) + #define CYTHON_USE_UNICODE_WRITER 1 + #endif + #ifndef CYTHON_AVOID_BORROWED_REFS + #define CYTHON_AVOID_BORROWED_REFS 0 + #endif + #ifndef CYTHON_ASSUME_SAFE_MACROS + #define CYTHON_ASSUME_SAFE_MACROS 1 + #endif + #ifndef CYTHON_UNPACK_METHODS + #define CYTHON_UNPACK_METHODS 1 + #endif + #ifndef CYTHON_FAST_THREAD_STATE + #define CYTHON_FAST_THREAD_STATE 1 + #endif + #ifndef CYTHON_FAST_PYCALL + #define CYTHON_FAST_PYCALL 1 + #endif + #ifndef CYTHON_PEP489_MULTI_PHASE_INIT + #define CYTHON_PEP489_MULTI_PHASE_INIT (PY_VERSION_HEX >= 0x03050000) + #endif + #ifndef CYTHON_USE_TP_FINALIZE + #define CYTHON_USE_TP_FINALIZE (PY_VERSION_HEX >= 0x030400a1) + #endif + #ifndef CYTHON_USE_DICT_VERSIONS + #define CYTHON_USE_DICT_VERSIONS (PY_VERSION_HEX >= 0x030600B1) + #endif + #ifndef CYTHON_USE_EXC_INFO_STACK + #define CYTHON_USE_EXC_INFO_STACK (PY_VERSION_HEX >= 0x030700A3) + #endif #endif +#if !defined(CYTHON_FAST_PYCCALL) +#define CYTHON_FAST_PYCCALL (CYTHON_FAST_PYCALL && PY_VERSION_HEX >= 0x030600B1) +#endif +#if CYTHON_USE_PYLONG_INTERNALS + #include "longintrepr.h" + #undef SHIFT + #undef BASE + #undef MASK +#endif +#ifndef __has_attribute + #define __has_attribute(x) 0 +#endif +#ifndef __has_cpp_attribute + #define __has_cpp_attribute(x) 0 +#endif +#ifndef CYTHON_RESTRICT + #if defined(__GNUC__) + #define CYTHON_RESTRICT __restrict__ + #elif defined(_MSC_VER) && _MSC_VER >= 1400 + #define CYTHON_RESTRICT __restrict + #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L + #define CYTHON_RESTRICT restrict + #else + #define CYTHON_RESTRICT + #endif +#endif +#ifndef CYTHON_UNUSED +# if defined(__GNUC__) +# if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4)) +# define CYTHON_UNUSED __attribute__ ((__unused__)) +# else +# define CYTHON_UNUSED +# endif +# elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER)) +# define CYTHON_UNUSED __attribute__ ((__unused__)) +# else +# define CYTHON_UNUSED +# endif +#endif +#ifndef CYTHON_MAYBE_UNUSED_VAR +# if defined(__cplusplus) + template void CYTHON_MAYBE_UNUSED_VAR( const T& ) { } +# else +# define CYTHON_MAYBE_UNUSED_VAR(x) (void)(x) +# endif +#endif +#ifndef CYTHON_NCP_UNUSED +# if CYTHON_COMPILING_IN_CPYTHON +# define CYTHON_NCP_UNUSED +# else +# define CYTHON_NCP_UNUSED CYTHON_UNUSED +# endif +#endif +#define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None) +#ifdef _MSC_VER + #ifndef _MSC_STDINT_H_ + #if _MSC_VER < 1300 + typedef unsigned char uint8_t; + typedef unsigned int uint32_t; + #else + typedef unsigned __int8 uint8_t; + typedef unsigned __int32 uint32_t; + #endif + #endif +#else + #include +#endif +#ifndef CYTHON_FALLTHROUGH + #if defined(__cplusplus) && __cplusplus >= 201103L + #if __has_cpp_attribute(fallthrough) + #define CYTHON_FALLTHROUGH [[fallthrough]] + #elif __has_cpp_attribute(clang::fallthrough) + #define CYTHON_FALLTHROUGH [[clang::fallthrough]] + #elif __has_cpp_attribute(gnu::fallthrough) + #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] + #endif + #endif + #ifndef CYTHON_FALLTHROUGH + #if __has_attribute(fallthrough) + #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) + #else + #define CYTHON_FALLTHROUGH + #endif + #endif + #if defined(__clang__ ) && defined(__apple_build_version__) + #if __apple_build_version__ < 7000000 + #undef CYTHON_FALLTHROUGH + #define CYTHON_FALLTHROUGH + #endif + #endif +#endif + +#ifndef CYTHON_INLINE + #if defined(__clang__) + #define CYTHON_INLINE __inline__ __attribute__ ((__unused__)) + #elif defined(__GNUC__) + #define CYTHON_INLINE __inline__ + #elif defined(_MSC_VER) + #define CYTHON_INLINE __inline + #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L + #define CYTHON_INLINE inline + #else + #define CYTHON_INLINE + #endif +#endif + #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x02070600 && !defined(Py_OptimizeFlag) -#define Py_OptimizeFlag 0 + #define Py_OptimizeFlag 0 #endif #define __PYX_BUILD_PY_SSIZE_T "n" #define CYTHON_FORMAT_SSIZE_T "z" #if PY_MAJOR_VERSION < 3 #define __Pyx_BUILTIN_MODULE_NAME "__builtin__" - #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) \ + #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) #define __Pyx_DefaultClassType PyClass_Type #else #define __Pyx_BUILTIN_MODULE_NAME "builtins" - #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) \ + #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) #define __Pyx_DefaultClassType PyType_Type #endif -#if PY_MAJOR_VERSION >= 3 +#ifndef Py_TPFLAGS_CHECKTYPES #define Py_TPFLAGS_CHECKTYPES 0 +#endif +#ifndef Py_TPFLAGS_HAVE_INDEX #define Py_TPFLAGS_HAVE_INDEX 0 +#endif +#ifndef Py_TPFLAGS_HAVE_NEWBUFFER #define Py_TPFLAGS_HAVE_NEWBUFFER 0 #endif -#if PY_VERSION_HEX < 0x030400a1 && !defined(Py_TPFLAGS_HAVE_FINALIZE) +#ifndef Py_TPFLAGS_HAVE_FINALIZE #define Py_TPFLAGS_HAVE_FINALIZE 0 #endif +#ifndef METH_STACKLESS + #define METH_STACKLESS 0 +#endif +#if PY_VERSION_HEX <= 0x030700A3 || !defined(METH_FASTCALL) + #ifndef METH_FASTCALL + #define METH_FASTCALL 0x80 + #endif + typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject *const *args, Py_ssize_t nargs); + typedef PyObject *(*__Pyx_PyCFunctionFastWithKeywords) (PyObject *self, PyObject *const *args, + Py_ssize_t nargs, PyObject *kwnames); +#else + #define __Pyx_PyCFunctionFast _PyCFunctionFast + #define __Pyx_PyCFunctionFastWithKeywords _PyCFunctionFastWithKeywords +#endif +#if CYTHON_FAST_PYCCALL +#define __Pyx_PyFastCFunction_Check(func)\ + ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS | METH_STACKLESS))))) +#else +#define __Pyx_PyFastCFunction_Check(func) 0 +#endif +#if CYTHON_USE_DICT_VERSIONS +#define __PYX_GET_DICT_VERSION(dict) (((PyDictObject*)(dict))->ma_version_tag) +#define __PYX_UPDATE_DICT_CACHE(dict, value, cache_var, version_var)\ + (version_var) = __PYX_GET_DICT_VERSION(dict);\ + (cache_var) = (value); +#define __PYX_PY_DICT_LOOKUP_IF_MODIFIED(VAR, DICT, LOOKUP) {\ + static PY_UINT64_T __pyx_dict_version = 0;\ + static PyObject *__pyx_dict_cached_value = NULL;\ + if (likely(__PYX_GET_DICT_VERSION(DICT) == __pyx_dict_version)) {\ + (VAR) = __pyx_dict_cached_value;\ + } else {\ + (VAR) = __pyx_dict_cached_value = (LOOKUP);\ + __pyx_dict_version = __PYX_GET_DICT_VERSION(DICT);\ + }\ + } +#else +#define __PYX_GET_DICT_VERSION(dict) (0) +#define __PYX_UPDATE_DICT_CACHE(dict, value, cache_var, version_var) +#define __PYX_PY_DICT_LOOKUP_IF_MODIFIED(VAR, DICT, LOOKUP) (VAR) = (LOOKUP); +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Malloc) + #define PyObject_Malloc(s) PyMem_Malloc(s) + #define PyObject_Free(p) PyMem_Free(p) + #define PyObject_Realloc(p) PyMem_Realloc(p) +#endif +#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030400A1 + #define PyMem_RawMalloc(n) PyMem_Malloc(n) + #define PyMem_RawRealloc(p, n) PyMem_Realloc(p, n) + #define PyMem_RawFree(p) PyMem_Free(p) +#endif +#if CYTHON_COMPILING_IN_PYSTON + #define __Pyx_PyCode_HasFreeVars(co) PyCode_HasFreeVars(co) + #define __Pyx_PyFrame_SetLineNumber(frame, lineno) PyFrame_SetLineNumber(frame, lineno) +#else + #define __Pyx_PyCode_HasFreeVars(co) (PyCode_GetNumFree(co) > 0) + #define __Pyx_PyFrame_SetLineNumber(frame, lineno) (frame)->f_lineno = (lineno) +#endif +#if !CYTHON_FAST_THREAD_STATE || PY_VERSION_HEX < 0x02070000 + #define __Pyx_PyThreadState_Current PyThreadState_GET() +#elif PY_VERSION_HEX >= 0x03060000 + #define __Pyx_PyThreadState_Current _PyThreadState_UncheckedGet() +#elif PY_VERSION_HEX >= 0x03000000 + #define __Pyx_PyThreadState_Current PyThreadState_GET() +#else + #define __Pyx_PyThreadState_Current _PyThreadState_Current +#endif +#if PY_VERSION_HEX < 0x030700A2 && !defined(PyThread_tss_create) && !defined(Py_tss_NEEDS_INIT) +#include "pythread.h" +#define Py_tss_NEEDS_INIT 0 +typedef int Py_tss_t; +static CYTHON_INLINE int PyThread_tss_create(Py_tss_t *key) { + *key = PyThread_create_key(); + return 0; // PyThread_create_key reports success always +} +static CYTHON_INLINE Py_tss_t * PyThread_tss_alloc(void) { + Py_tss_t *key = (Py_tss_t *)PyObject_Malloc(sizeof(Py_tss_t)); + *key = Py_tss_NEEDS_INIT; + return key; +} +static CYTHON_INLINE void PyThread_tss_free(Py_tss_t *key) { + PyObject_Free(key); +} +static CYTHON_INLINE int PyThread_tss_is_created(Py_tss_t *key) { + return *key != Py_tss_NEEDS_INIT; +} +static CYTHON_INLINE void PyThread_tss_delete(Py_tss_t *key) { + PyThread_delete_key(*key); + *key = Py_tss_NEEDS_INIT; +} +static CYTHON_INLINE int PyThread_tss_set(Py_tss_t *key, void *value) { + return PyThread_set_key_value(*key, value); +} +static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) { + return PyThread_get_key_value(*key); +} +#endif // TSS (Thread Specific Storage) API +#if CYTHON_COMPILING_IN_CPYTHON || defined(_PyDict_NewPresized) +#define __Pyx_PyDict_NewPresized(n) ((n <= 8) ? PyDict_New() : _PyDict_NewPresized(n)) +#else +#define __Pyx_PyDict_NewPresized(n) PyDict_New() +#endif +#if PY_MAJOR_VERSION >= 3 || CYTHON_FUTURE_DIVISION + #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y) + #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y) +#else + #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y) + #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y) +#endif +#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1 && CYTHON_USE_UNICODE_INTERNALS +#define __Pyx_PyDict_GetItemStr(dict, name) _PyDict_GetItem_KnownHash(dict, name, ((PyASCIIObject *) name)->hash) +#else +#define __Pyx_PyDict_GetItemStr(dict, name) PyDict_GetItem(dict, name) +#endif #if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND) #define CYTHON_PEP393_ENABLED 1 - #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ? \ + #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ?\ 0 : _PyUnicode_Ready((PyObject *)(op))) #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u) #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i) + #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) PyUnicode_MAX_CHAR_VALUE(u) #define __Pyx_PyUnicode_KIND(u) PyUnicode_KIND(u) #define __Pyx_PyUnicode_DATA(u) PyUnicode_DATA(u) #define __Pyx_PyUnicode_READ(k, d, i) PyUnicode_READ(k, d, i) + #define __Pyx_PyUnicode_WRITE(k, d, i, ch) PyUnicode_WRITE(k, d, i, ch) + #define __Pyx_PyUnicode_IS_TRUE(u) (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : PyUnicode_GET_SIZE(u))) #else #define CYTHON_PEP393_ENABLED 0 + #define PyUnicode_1BYTE_KIND 1 + #define PyUnicode_2BYTE_KIND 2 + #define PyUnicode_4BYTE_KIND 4 #define __Pyx_PyUnicode_READY(op) (0) #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_SIZE(u) #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i])) + #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) ((sizeof(Py_UNICODE) == 2) ? 65535 : 1114111) #define __Pyx_PyUnicode_KIND(u) (sizeof(Py_UNICODE)) #define __Pyx_PyUnicode_DATA(u) ((void*)PyUnicode_AS_UNICODE(u)) #define __Pyx_PyUnicode_READ(k, d, i) ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i])) + #define __Pyx_PyUnicode_WRITE(k, d, i, ch) (((void)(k)), ((Py_UNICODE*)d)[i] = ch) + #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GET_SIZE(u)) #endif #if CYTHON_COMPILING_IN_PYPY #define __Pyx_PyUnicode_Concat(a, b) PyNumber_Add(a, b) #define __Pyx_PyUnicode_ConcatSafe(a, b) PyNumber_Add(a, b) - #define __Pyx_PyFrozenSet_Size(s) PyObject_Size(s) #else #define __Pyx_PyUnicode_Concat(a, b) PyUnicode_Concat(a, b) - #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ? \ + #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ?\ PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b)) - #define __Pyx_PyFrozenSet_Size(s) PySet_Size(s) #endif -#define __Pyx_PyString_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b)) -#define __Pyx_PyUnicode_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b)) +#if CYTHON_COMPILING_IN_PYPY && !defined(PyUnicode_Contains) + #define PyUnicode_Contains(u, s) PySequence_Contains(u, s) +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyByteArray_Check) + #define PyByteArray_Check(obj) PyObject_TypeCheck(obj, &PyByteArray_Type) +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Format) + #define PyObject_Format(obj, fmt) PyObject_CallMethod(obj, "__format__", "O", fmt) +#endif +#define __Pyx_PyString_FormatSafe(a, b) ((unlikely((a) == Py_None || (PyString_Check(b) && !PyString_CheckExact(b)))) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b)) +#define __Pyx_PyUnicode_FormatSafe(a, b) ((unlikely((a) == Py_None || (PyUnicode_Check(b) && !PyUnicode_CheckExact(b)))) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b)) #if PY_MAJOR_VERSION >= 3 #define __Pyx_PyString_Format(a, b) PyUnicode_Format(a, b) #else #define __Pyx_PyString_Format(a, b) PyString_Format(a, b) #endif +#if PY_MAJOR_VERSION < 3 && !defined(PyObject_ASCII) + #define PyObject_ASCII(o) PyObject_Repr(o) +#endif #if PY_MAJOR_VERSION >= 3 #define PyBaseString_Type PyUnicode_Type #define PyStringObject PyUnicodeObject #define PyString_Type PyUnicode_Type #define PyString_Check PyUnicode_Check #define PyString_CheckExact PyUnicode_CheckExact + #define PyObject_Unicode PyObject_Str #endif #if PY_MAJOR_VERSION >= 3 #define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj) @@ -138,7 +521,11 @@ END: Cython Metadata */ #ifndef PySet_CheckExact #define PySet_CheckExact(obj) (Py_TYPE(obj) == &PySet_Type) #endif -#define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type) +#if CYTHON_ASSUME_SAFE_MACROS + #define __Pyx_PySequence_SIZE(seq) Py_SIZE(seq) +#else + #define __Pyx_PySequence_SIZE(seq) PySequence_Size(seq) +#endif #if PY_MAJOR_VERSION >= 3 #define PyIntObject PyLongObject #define PyInt_Type PyLong_Type @@ -173,71 +560,53 @@ END: Cython Metadata */ #define __Pyx_PyInt_AsHash_t PyInt_AsSsize_t #endif #if PY_MAJOR_VERSION >= 3 - #define __Pyx_PyMethod_New(func, self, klass) ((self) ? PyMethod_New(func, self) : PyInstanceMethod_New(func)) + #define __Pyx_PyMethod_New(func, self, klass) ((self) ? PyMethod_New(func, self) : (Py_INCREF(func), func)) #else #define __Pyx_PyMethod_New(func, self, klass) PyMethod_New(func, self, klass) #endif -#ifndef CYTHON_INLINE - #if defined(__GNUC__) - #define CYTHON_INLINE __inline__ - #elif defined(_MSC_VER) - #define CYTHON_INLINE __inline - #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L - #define CYTHON_INLINE inline +#if CYTHON_USE_ASYNC_SLOTS + #if PY_VERSION_HEX >= 0x030500B1 + #define __Pyx_PyAsyncMethodsStruct PyAsyncMethods + #define __Pyx_PyType_AsAsync(obj) (Py_TYPE(obj)->tp_as_async) #else - #define CYTHON_INLINE + #define __Pyx_PyType_AsAsync(obj) ((__Pyx_PyAsyncMethodsStruct*) (Py_TYPE(obj)->tp_reserved)) #endif +#else + #define __Pyx_PyType_AsAsync(obj) NULL #endif -#ifndef CYTHON_RESTRICT - #if defined(__GNUC__) - #define CYTHON_RESTRICT __restrict__ - #elif defined(_MSC_VER) && _MSC_VER >= 1400 - #define CYTHON_RESTRICT __restrict - #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L - #define CYTHON_RESTRICT restrict - #else - #define CYTHON_RESTRICT - #endif +#ifndef __Pyx_PyAsyncMethodsStruct + typedef struct { + unaryfunc am_await; + unaryfunc am_aiter; + unaryfunc am_anext; + } __Pyx_PyAsyncMethodsStruct; #endif + +#if defined(WIN32) || defined(MS_WINDOWS) + #define _USE_MATH_DEFINES +#endif +#include #ifdef NAN #define __PYX_NAN() ((float) NAN) #else static CYTHON_INLINE float __PYX_NAN() { - /* Initialize NaN. The sign is irrelevant, an exponent with all bits 1 and - a nonzero mantissa means NaN. If the first bit in the mantissa is 1, it is - a quiet NaN. */ float value; memset(&value, 0xFF, sizeof(value)); return value; } #endif -#define __Pyx_void_to_None(void_result) (void_result, Py_INCREF(Py_None), Py_None) -#ifdef __cplusplus -template -void __Pyx_call_destructor(T* x) { - x->~T(); -} -template -class __Pyx_FakeReference { - public: - __Pyx_FakeReference() : ptr(NULL) { } - __Pyx_FakeReference(T& ref) : ptr(&ref) { } - T *operator->() { return ptr; } - operator T&() { return *ptr; } - private: - T *ptr; -}; -#endif - - -#if PY_MAJOR_VERSION >= 3 - #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y) - #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y) +#if defined(__CYGWIN__) && defined(_LDBL_EQ_DBL) +#define __Pyx_truncl trunc #else - #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y) - #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y) +#define __Pyx_truncl truncl #endif + +#define __PYX_ERR(f_index, lineno, Ln_error) \ +{ \ + __pyx_filename = __pyx_f[f_index]; __pyx_lineno = lineno; __pyx_clineno = __LINE__; goto Ln_error; \ +} + #ifndef __PYX_EXTERN_C #ifdef __cplusplus #define __PYX_EXTERN_C extern "C" @@ -246,15 +615,11 @@ class __Pyx_FakeReference { #endif #endif -#if defined(WIN32) || defined(MS_WINDOWS) -#define _USE_MATH_DEFINES -#endif -#include #define __PYX_HAVE__GPy__models__state_space_cython #define __PYX_HAVE_API__GPy__models__state_space_cython -#include "string.h" -#include "stdio.h" -#include "stdlib.h" +/* Early includes */ +#include +#include #include "numpy/arrayobject.h" #include "numpy/ufuncobject.h" #include "numpy/npy_math.h" @@ -262,24 +627,11 @@ class __Pyx_FakeReference { #include #endif /* _OPENMP */ -#ifdef PYREX_WITHOUT_ASSERTIONS +#if defined(PYREX_WITHOUT_ASSERTIONS) && !defined(CYTHON_WITHOUT_ASSERTIONS) #define CYTHON_WITHOUT_ASSERTIONS #endif -#ifndef CYTHON_UNUSED -# if defined(__GNUC__) -# if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4)) -# define CYTHON_UNUSED __attribute__ ((__unused__)) -# else -# define CYTHON_UNUSED -# endif -# elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER)) -# define CYTHON_UNUSED __attribute__ ((__unused__)) -# else -# define CYTHON_UNUSED -# endif -#endif -typedef struct {PyObject **p; char *s; const Py_ssize_t n; const char* encoding; +typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* encoding; const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry; #define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0 @@ -287,18 +639,39 @@ typedef struct {PyObject **p; char *s; const Py_ssize_t n; const char* encoding; #define __PYX_DEFAULT_STRING_ENCODING "" #define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString #define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize -#define __Pyx_fits_Py_ssize_t(v, type, is_signed) ( \ - (sizeof(type) < sizeof(Py_ssize_t)) || \ - (sizeof(type) > sizeof(Py_ssize_t) && \ - likely(v < (type)PY_SSIZE_T_MAX || \ - v == (type)PY_SSIZE_T_MAX) && \ - (!is_signed || likely(v > (type)PY_SSIZE_T_MIN || \ - v == (type)PY_SSIZE_T_MIN))) || \ - (sizeof(type) == sizeof(Py_ssize_t) && \ - (is_signed || likely(v < (type)PY_SSIZE_T_MAX || \ +#define __Pyx_uchar_cast(c) ((unsigned char)c) +#define __Pyx_long_cast(x) ((long)x) +#define __Pyx_fits_Py_ssize_t(v, type, is_signed) (\ + (sizeof(type) < sizeof(Py_ssize_t)) ||\ + (sizeof(type) > sizeof(Py_ssize_t) &&\ + likely(v < (type)PY_SSIZE_T_MAX ||\ + v == (type)PY_SSIZE_T_MAX) &&\ + (!is_signed || likely(v > (type)PY_SSIZE_T_MIN ||\ + v == (type)PY_SSIZE_T_MIN))) ||\ + (sizeof(type) == sizeof(Py_ssize_t) &&\ + (is_signed || likely(v < (type)PY_SSIZE_T_MAX ||\ v == (type)PY_SSIZE_T_MAX))) ) -static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject*); -static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); +static CYTHON_INLINE int __Pyx_is_valid_index(Py_ssize_t i, Py_ssize_t limit) { + return (size_t) i < (size_t) limit; +} +#if defined (__cplusplus) && __cplusplus >= 201103L + #include + #define __Pyx_sst_abs(value) std::abs(value) +#elif SIZEOF_INT >= SIZEOF_SIZE_T + #define __Pyx_sst_abs(value) abs(value) +#elif SIZEOF_LONG >= SIZEOF_SIZE_T + #define __Pyx_sst_abs(value) labs(value) +#elif defined (_MSC_VER) + #define __Pyx_sst_abs(value) ((Py_ssize_t)_abs64(value)) +#elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L + #define __Pyx_sst_abs(value) llabs(value) +#elif defined (__GNUC__) + #define __Pyx_sst_abs(value) __builtin_llabs(value) +#else + #define __Pyx_sst_abs(value) ((value<0) ? -value : value) +#endif +static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject*); +static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); #define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s)) #define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l) #define __Pyx_PyBytes_FromString PyBytes_FromString @@ -311,38 +684,52 @@ static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*); #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize #endif -#define __Pyx_PyObject_AsSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) -#define __Pyx_PyObject_AsUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyBytes_AsWritableString(s) ((char*) PyBytes_AS_STRING(s)) +#define __Pyx_PyBytes_AsWritableSString(s) ((signed char*) PyBytes_AS_STRING(s)) +#define __Pyx_PyBytes_AsWritableUString(s) ((unsigned char*) PyBytes_AS_STRING(s)) +#define __Pyx_PyBytes_AsString(s) ((const char*) PyBytes_AS_STRING(s)) +#define __Pyx_PyBytes_AsSString(s) ((const signed char*) PyBytes_AS_STRING(s)) +#define __Pyx_PyBytes_AsUString(s) ((const unsigned char*) PyBytes_AS_STRING(s)) +#define __Pyx_PyObject_AsWritableString(s) ((char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsWritableSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsWritableUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsSString(s) ((const signed char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsUString(s) ((const unsigned char*) __Pyx_PyObject_AsString(s)) #define __Pyx_PyObject_FromCString(s) __Pyx_PyObject_FromString((const char*)s) #define __Pyx_PyBytes_FromCString(s) __Pyx_PyBytes_FromString((const char*)s) #define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s) #define __Pyx_PyStr_FromCString(s) __Pyx_PyStr_FromString((const char*)s) #define __Pyx_PyUnicode_FromCString(s) __Pyx_PyUnicode_FromString((const char*)s) -#if PY_MAJOR_VERSION < 3 -static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u) -{ +static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u) { const Py_UNICODE *u_end = u; while (*u_end++) ; return (size_t)(u_end - u - 1); } -#else -#define __Pyx_Py_UNICODE_strlen Py_UNICODE_strlen -#endif #define __Pyx_PyUnicode_FromUnicode(u) PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u)) #define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode #define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode -#define __Pyx_Owned_Py_None(b) (Py_INCREF(Py_None), Py_None) -#define __Pyx_PyBool_FromLong(b) ((b) ? (Py_INCREF(Py_True), Py_True) : (Py_INCREF(Py_False), Py_False)) +#define __Pyx_NewRef(obj) (Py_INCREF(obj), obj) +#define __Pyx_Owned_Py_None(b) __Pyx_NewRef(Py_None) +static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b); static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*); -static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x); +static CYTHON_INLINE int __Pyx_PyObject_IsTrueAndDecref(PyObject*); +static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x); +#define __Pyx_PySequence_Tuple(obj)\ + (likely(PyTuple_CheckExact(obj)) ? __Pyx_NewRef(obj) : PySequence_Tuple(obj)) static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*); static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t); -#if CYTHON_COMPILING_IN_CPYTHON +#if CYTHON_ASSUME_SAFE_MACROS #define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x)) #else #define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x) #endif #define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x)) +#if PY_MAJOR_VERSION >= 3 +#define __Pyx_PyNumber_Int(x) (PyLong_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Long(x)) +#else +#define __Pyx_PyNumber_Int(x) (PyInt_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Int(x)) +#endif +#define __Pyx_PyNumber_Float(x) (PyFloat_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Float(x)) #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII static int __Pyx_sys_getdefaultencoding_not_ascii; static int __Pyx_init_sys_getdefaultencoding_params(void) { @@ -406,7 +793,7 @@ static int __Pyx_init_sys_getdefaultencoding_params(void) { if (!default_encoding) goto bad; default_encoding_c = PyBytes_AsString(default_encoding); if (!default_encoding_c) goto bad; - __PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c)); + __PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c) + 1); if (!__PYX_DEFAULT_STRING_ENCODING) goto bad; strcpy(__PYX_DEFAULT_STRING_ENCODING, default_encoding_c); Py_DECREF(default_encoding); @@ -427,17 +814,21 @@ bad: #define likely(x) (x) #define unlikely(x) (x) #endif /* __GNUC__ */ +static CYTHON_INLINE void __Pyx_pretend_to_initialize(void* ptr) { (void)ptr; } -static PyObject *__pyx_m; +static PyObject *__pyx_m = NULL; static PyObject *__pyx_d; static PyObject *__pyx_b; +static PyObject *__pyx_cython_runtime = NULL; static PyObject *__pyx_empty_tuple; static PyObject *__pyx_empty_bytes; +static PyObject *__pyx_empty_unicode; static int __pyx_lineno; static int __pyx_clineno = 0; static const char * __pyx_cfilenm= __FILE__; static const char *__pyx_filename; +/* Header.proto */ #if !defined(CYTHON_CCOMPLEX) #if defined(__cplusplus) #define CYTHON_CCOMPLEX 1 @@ -461,10 +852,12 @@ static const char *__pyx_filename; static const char *__pyx_f[] = { - "GPy/models/state_space_cython.pyx", + "state_space_cython.pyx", + "stringsource", "__init__.pxd", "type.pxd", }; +/* BufferFormatStructs.proto */ #define IS_UNSIGNED(type) (((type) -1) > 0) struct __Pyx_StructField_; #define __PYX_BUF_FLAGS_PACKED_STRUCT (1 << 0) @@ -501,7 +894,7 @@ typedef struct { } __Pyx_BufFmt_Context; -/* "../../../../../../../Work/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":726 +/* "../../../../../anaconda3/envs/bayesopt/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":776 * # in Cython to enable them only on the right systems. * * ctypedef npy_int8 int8_t # <<<<<<<<<<<<<< @@ -510,7 +903,7 @@ typedef struct { */ typedef npy_int8 __pyx_t_5numpy_int8_t; -/* "../../../../../../../Work/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":727 +/* "../../../../../anaconda3/envs/bayesopt/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":777 * * ctypedef npy_int8 int8_t * ctypedef npy_int16 int16_t # <<<<<<<<<<<<<< @@ -519,7 +912,7 @@ typedef npy_int8 __pyx_t_5numpy_int8_t; */ typedef npy_int16 __pyx_t_5numpy_int16_t; -/* "../../../../../../../Work/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":728 +/* "../../../../../anaconda3/envs/bayesopt/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":778 * ctypedef npy_int8 int8_t * ctypedef npy_int16 int16_t * ctypedef npy_int32 int32_t # <<<<<<<<<<<<<< @@ -528,7 +921,7 @@ typedef npy_int16 __pyx_t_5numpy_int16_t; */ typedef npy_int32 __pyx_t_5numpy_int32_t; -/* "../../../../../../../Work/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":729 +/* "../../../../../anaconda3/envs/bayesopt/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":779 * ctypedef npy_int16 int16_t * ctypedef npy_int32 int32_t * ctypedef npy_int64 int64_t # <<<<<<<<<<<<<< @@ -537,7 +930,7 @@ typedef npy_int32 __pyx_t_5numpy_int32_t; */ typedef npy_int64 __pyx_t_5numpy_int64_t; -/* "../../../../../../../Work/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":733 +/* "../../../../../anaconda3/envs/bayesopt/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":783 * #ctypedef npy_int128 int128_t * * ctypedef npy_uint8 uint8_t # <<<<<<<<<<<<<< @@ -546,7 +939,7 @@ typedef npy_int64 __pyx_t_5numpy_int64_t; */ typedef npy_uint8 __pyx_t_5numpy_uint8_t; -/* "../../../../../../../Work/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":734 +/* "../../../../../anaconda3/envs/bayesopt/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":784 * * ctypedef npy_uint8 uint8_t * ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<< @@ -555,7 +948,7 @@ typedef npy_uint8 __pyx_t_5numpy_uint8_t; */ typedef npy_uint16 __pyx_t_5numpy_uint16_t; -/* "../../../../../../../Work/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":735 +/* "../../../../../anaconda3/envs/bayesopt/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":785 * ctypedef npy_uint8 uint8_t * ctypedef npy_uint16 uint16_t * ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<< @@ -564,7 +957,7 @@ typedef npy_uint16 __pyx_t_5numpy_uint16_t; */ typedef npy_uint32 __pyx_t_5numpy_uint32_t; -/* "../../../../../../../Work/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":736 +/* "../../../../../anaconda3/envs/bayesopt/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":786 * ctypedef npy_uint16 uint16_t * ctypedef npy_uint32 uint32_t * ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<< @@ -573,7 +966,7 @@ typedef npy_uint32 __pyx_t_5numpy_uint32_t; */ typedef npy_uint64 __pyx_t_5numpy_uint64_t; -/* "../../../../../../../Work/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":740 +/* "../../../../../anaconda3/envs/bayesopt/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":790 * #ctypedef npy_uint128 uint128_t * * ctypedef npy_float32 float32_t # <<<<<<<<<<<<<< @@ -582,7 +975,7 @@ typedef npy_uint64 __pyx_t_5numpy_uint64_t; */ typedef npy_float32 __pyx_t_5numpy_float32_t; -/* "../../../../../../../Work/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":741 +/* "../../../../../anaconda3/envs/bayesopt/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":791 * * ctypedef npy_float32 float32_t * ctypedef npy_float64 float64_t # <<<<<<<<<<<<<< @@ -591,7 +984,7 @@ typedef npy_float32 __pyx_t_5numpy_float32_t; */ typedef npy_float64 __pyx_t_5numpy_float64_t; -/* "../../../../../../../Work/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":750 +/* "../../../../../anaconda3/envs/bayesopt/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":800 * # The int types are mapped a bit surprising -- * # numpy.int corresponds to 'l' and numpy.long to 'q' * ctypedef npy_long int_t # <<<<<<<<<<<<<< @@ -600,7 +993,7 @@ typedef npy_float64 __pyx_t_5numpy_float64_t; */ typedef npy_long __pyx_t_5numpy_int_t; -/* "../../../../../../../Work/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":751 +/* "../../../../../anaconda3/envs/bayesopt/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":801 * # numpy.int corresponds to 'l' and numpy.long to 'q' * ctypedef npy_long int_t * ctypedef npy_longlong long_t # <<<<<<<<<<<<<< @@ -609,7 +1002,7 @@ typedef npy_long __pyx_t_5numpy_int_t; */ typedef npy_longlong __pyx_t_5numpy_long_t; -/* "../../../../../../../Work/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":752 +/* "../../../../../anaconda3/envs/bayesopt/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":802 * ctypedef npy_long int_t * ctypedef npy_longlong long_t * ctypedef npy_longlong longlong_t # <<<<<<<<<<<<<< @@ -618,7 +1011,7 @@ typedef npy_longlong __pyx_t_5numpy_long_t; */ typedef npy_longlong __pyx_t_5numpy_longlong_t; -/* "../../../../../../../Work/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":754 +/* "../../../../../anaconda3/envs/bayesopt/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":804 * ctypedef npy_longlong longlong_t * * ctypedef npy_ulong uint_t # <<<<<<<<<<<<<< @@ -627,7 +1020,7 @@ typedef npy_longlong __pyx_t_5numpy_longlong_t; */ typedef npy_ulong __pyx_t_5numpy_uint_t; -/* "../../../../../../../Work/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":755 +/* "../../../../../anaconda3/envs/bayesopt/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":805 * * ctypedef npy_ulong uint_t * ctypedef npy_ulonglong ulong_t # <<<<<<<<<<<<<< @@ -636,7 +1029,7 @@ typedef npy_ulong __pyx_t_5numpy_uint_t; */ typedef npy_ulonglong __pyx_t_5numpy_ulong_t; -/* "../../../../../../../Work/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":756 +/* "../../../../../anaconda3/envs/bayesopt/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":806 * ctypedef npy_ulong uint_t * ctypedef npy_ulonglong ulong_t * ctypedef npy_ulonglong ulonglong_t # <<<<<<<<<<<<<< @@ -645,7 +1038,7 @@ typedef npy_ulonglong __pyx_t_5numpy_ulong_t; */ typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t; -/* "../../../../../../../Work/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":758 +/* "../../../../../anaconda3/envs/bayesopt/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":808 * ctypedef npy_ulonglong ulonglong_t * * ctypedef npy_intp intp_t # <<<<<<<<<<<<<< @@ -654,7 +1047,7 @@ typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t; */ typedef npy_intp __pyx_t_5numpy_intp_t; -/* "../../../../../../../Work/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":759 +/* "../../../../../anaconda3/envs/bayesopt/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":809 * * ctypedef npy_intp intp_t * ctypedef npy_uintp uintp_t # <<<<<<<<<<<<<< @@ -663,7 +1056,7 @@ typedef npy_intp __pyx_t_5numpy_intp_t; */ typedef npy_uintp __pyx_t_5numpy_uintp_t; -/* "../../../../../../../Work/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":761 +/* "../../../../../anaconda3/envs/bayesopt/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":811 * ctypedef npy_uintp uintp_t * * ctypedef npy_double float_t # <<<<<<<<<<<<<< @@ -672,7 +1065,7 @@ typedef npy_uintp __pyx_t_5numpy_uintp_t; */ typedef npy_double __pyx_t_5numpy_float_t; -/* "../../../../../../../Work/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":762 +/* "../../../../../anaconda3/envs/bayesopt/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":812 * * ctypedef npy_double float_t * ctypedef npy_double double_t # <<<<<<<<<<<<<< @@ -681,7 +1074,7 @@ typedef npy_double __pyx_t_5numpy_float_t; */ typedef npy_double __pyx_t_5numpy_double_t; -/* "../../../../../../../Work/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":763 +/* "../../../../../anaconda3/envs/bayesopt/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":813 * ctypedef npy_double float_t * ctypedef npy_double double_t * ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<< @@ -707,6 +1100,7 @@ typedef __pyx_t_5numpy_float64_t __pyx_t_3GPy_6models_18state_space_cython_DTYPE * # Template class for dynamic callables */ typedef __pyx_t_5numpy_int64_t __pyx_t_3GPy_6models_18state_space_cython_DTYPE_int_t; +/* Declarations.proto */ #if CYTHON_CCOMPLEX #ifdef __cplusplus typedef ::std::complex< float > __pyx_t_float_complex; @@ -716,7 +1110,9 @@ typedef __pyx_t_5numpy_int64_t __pyx_t_3GPy_6models_18state_space_cython_DTYPE_i #else typedef struct { float real, imag; } __pyx_t_float_complex; #endif +static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float, float); +/* Declarations.proto */ #if CYTHON_CCOMPLEX #ifdef __cplusplus typedef ::std::complex< double > __pyx_t_double_complex; @@ -726,6 +1122,7 @@ typedef __pyx_t_5numpy_int64_t __pyx_t_3GPy_6models_18state_space_cython_DTYPE_i #else typedef struct { double real, imag; } __pyx_t_double_complex; #endif +static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double, double); /*--- Type declarations ---*/ @@ -737,7 +1134,7 @@ struct __pyx_obj_3GPy_6models_18state_space_cython_Q_handling_Cython; struct __pyx_obj_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython; struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython; -/* "../../../../../../../Work/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":765 +/* "../../../../../anaconda3/envs/bayesopt/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":815 * ctypedef npy_longdouble longdouble_t * * ctypedef npy_cfloat cfloat_t # <<<<<<<<<<<<<< @@ -746,7 +1143,7 @@ struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython; */ typedef npy_cfloat __pyx_t_5numpy_cfloat_t; -/* "../../../../../../../Work/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":766 +/* "../../../../../anaconda3/envs/bayesopt/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":816 * * ctypedef npy_cfloat cfloat_t * ctypedef npy_cdouble cdouble_t # <<<<<<<<<<<<<< @@ -755,7 +1152,7 @@ typedef npy_cfloat __pyx_t_5numpy_cfloat_t; */ typedef npy_cdouble __pyx_t_5numpy_cdouble_t; -/* "../../../../../../../Work/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":767 +/* "../../../../../anaconda3/envs/bayesopt/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":817 * ctypedef npy_cfloat cfloat_t * ctypedef npy_cdouble cdouble_t * ctypedef npy_clongdouble clongdouble_t # <<<<<<<<<<<<<< @@ -764,7 +1161,7 @@ typedef npy_cdouble __pyx_t_5numpy_cdouble_t; */ typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t; -/* "../../../../../../../Work/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":769 +/* "../../../../../anaconda3/envs/bayesopt/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":819 * ctypedef npy_clongdouble clongdouble_t * * ctypedef npy_cdouble complex_t # <<<<<<<<<<<<<< @@ -776,6 +1173,7 @@ struct __pyx_opt_args_3GPy_6models_18state_space_cython_24Dynamic_Callables_Cyth struct __pyx_opt_args_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_reset; struct __pyx_opt_args_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython_reset; struct __pyx_opt_args_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_reset; +struct __pyx_opt_args_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_Q_inverse; /* "GPy/models/state_space_cython.pyx":40 * raise NotImplemented("(cython) dQk is not implemented!") @@ -813,7 +1211,7 @@ struct __pyx_opt_args_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_ int compute_derivatives; }; -/* "GPy/models/state_space_cython.pyx":444 +/* "GPy/models/state_space_cython.pyx":446 * return np.dot(A, m) # default dynamic model * * cpdef reset(self, bint compute_derivatives=False): # <<<<<<<<<<<<<< @@ -825,6 +1223,18 @@ struct __pyx_opt_args_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython int compute_derivatives; }; +/* "GPy/models/state_space_cython.pyx":501 + * + * + * cpdef Q_inverse(self, int k, float jitter=0.0): # <<<<<<<<<<<<<< + * """ + * Square root of the noise matrix Q + */ +struct __pyx_opt_args_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_Q_inverse { + int __pyx_n; 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+#else +#define __Pyx_PyCFunction_FastCall(func, args, nargs) (assert(0), NULL) +#endif + +/* PyObjectCall.proto */ #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw); #else #define __Pyx_PyObject_Call(func, arg, kw) PyObject_Call(func, arg, kw) #endif -static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb); -static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb); +/* PyThreadStateGet.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate; +#define __Pyx_PyThreadState_assign __pyx_tstate = __Pyx_PyThreadState_Current; +#define __Pyx_PyErr_Occurred() __pyx_tstate->curexc_type +#else +#define __Pyx_PyThreadState_declare +#define __Pyx_PyThreadState_assign +#define __Pyx_PyErr_Occurred() PyErr_Occurred() +#endif +/* PyErrFetchRestore.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_PyErr_Clear() __Pyx_ErrRestore(NULL, NULL, NULL) +#define __Pyx_ErrRestoreWithState(type, value, tb) __Pyx_ErrRestoreInState(PyThreadState_GET(), type, value, tb) +#define __Pyx_ErrFetchWithState(type, value, tb) __Pyx_ErrFetchInState(PyThreadState_GET(), type, value, tb) +#define __Pyx_ErrRestore(type, value, tb) __Pyx_ErrRestoreInState(__pyx_tstate, type, value, tb) +#define __Pyx_ErrFetch(type, value, tb) __Pyx_ErrFetchInState(__pyx_tstate, type, value, tb) +static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb); +static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); +#if CYTHON_COMPILING_IN_CPYTHON +#define __Pyx_PyErr_SetNone(exc) (Py_INCREF(exc), __Pyx_ErrRestore((exc), NULL, NULL)) +#else +#define __Pyx_PyErr_SetNone(exc) PyErr_SetNone(exc) +#endif +#else +#define __Pyx_PyErr_Clear() PyErr_Clear() +#define __Pyx_PyErr_SetNone(exc) PyErr_SetNone(exc) +#define __Pyx_ErrRestoreWithState(type, value, tb) PyErr_Restore(type, value, tb) +#define __Pyx_ErrFetchWithState(type, value, tb) PyErr_Fetch(type, value, tb) +#define __Pyx_ErrRestoreInState(tstate, type, value, tb) PyErr_Restore(type, value, tb) +#define __Pyx_ErrFetchInState(tstate, type, value, tb) PyErr_Fetch(type, value, tb) +#define __Pyx_ErrRestore(type, value, tb) PyErr_Restore(type, value, tb) +#define __Pyx_ErrFetch(type, value, tb) PyErr_Fetch(type, value, tb) +#endif + +/* RaiseException.proto */ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause); +/* RaiseArgTupleInvalid.proto */ static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact, Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found); +/* RaiseDoubleKeywords.proto */ static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name); -static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[], \ - PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args, \ +/* ParseKeywords.proto */ +static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[],\ + PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args,\ const char* function_name); -static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed, - const char *name, int exact); +/* ArgTypeTest.proto */ +#define __Pyx_ArgTypeTest(obj, type, none_allowed, name, exact)\ + ((likely((Py_TYPE(obj) == type) | (none_allowed && (obj == Py_None)))) ? 1 :\ + __Pyx__ArgTypeTest(obj, type, name, exact)) +static int __Pyx__ArgTypeTest(PyObject *obj, PyTypeObject *type, const char *name, int exact); +/* PyObjectCall2Args.proto */ +static CYTHON_UNUSED PyObject* __Pyx_PyObject_Call2Args(PyObject* function, PyObject* arg1, PyObject* arg2); + +/* PyObjectCallMethO.proto */ #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg); #endif +/* PyObjectCallOneArg.proto */ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg); -static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name); +/* PyErrExceptionMatches.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_PyErr_ExceptionMatches(err) __Pyx_PyErr_ExceptionMatchesInState(__pyx_tstate, err) +static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err); +#else +#define __Pyx_PyErr_ExceptionMatches(err) PyErr_ExceptionMatches(err) +#endif +/* GetAttr.proto */ +static CYTHON_INLINE PyObject *__Pyx_GetAttr(PyObject *, PyObject *); + +/* GetAttr3.proto */ +static CYTHON_INLINE PyObject *__Pyx_GetAttr3(PyObject *, PyObject *, PyObject *); + +/* GetModuleGlobalName.proto */ +#if CYTHON_USE_DICT_VERSIONS +#define __Pyx_GetModuleGlobalName(var, name) {\ + static PY_UINT64_T __pyx_dict_version = 0;\ + static PyObject *__pyx_dict_cached_value = NULL;\ + (var) = (likely(__pyx_dict_version == __PYX_GET_DICT_VERSION(__pyx_d))) ?\ + (likely(__pyx_dict_cached_value) ? __Pyx_NewRef(__pyx_dict_cached_value) : __Pyx_GetBuiltinName(name)) :\ + __Pyx__GetModuleGlobalName(name, &__pyx_dict_version, &__pyx_dict_cached_value);\ +} +#define __Pyx_GetModuleGlobalNameUncached(var, name) {\ + PY_UINT64_T __pyx_dict_version;\ + PyObject *__pyx_dict_cached_value;\ + (var) = __Pyx__GetModuleGlobalName(name, &__pyx_dict_version, &__pyx_dict_cached_value);\ +} +static PyObject *__Pyx__GetModuleGlobalName(PyObject *name, PY_UINT64_T *dict_version, PyObject **dict_cached_value); +#else +#define __Pyx_GetModuleGlobalName(var, name) (var) = __Pyx__GetModuleGlobalName(name) +#define __Pyx_GetModuleGlobalNameUncached(var, name) (var) = __Pyx__GetModuleGlobalName(name) +static CYTHON_INLINE PyObject *__Pyx__GetModuleGlobalName(PyObject *name); +#endif + +/* GetItemInt.proto */ +#define __Pyx_GetItemInt(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ + (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ + __Pyx_GetItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound, boundscheck) :\ + (is_list ? (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) :\ + __Pyx_GetItemInt_Generic(o, to_py_func(i)))) +#define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ + (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ + __Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\ + (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL)) +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, + int wraparound, int boundscheck); +#define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ + (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ + __Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\ + (PyErr_SetString(PyExc_IndexError, "tuple index out of range"), (PyObject*)NULL)) +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, + int wraparound, int boundscheck); +static PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j); +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, + int is_list, int wraparound, int boundscheck); + +/* ObjectGetItem.proto */ +#if CYTHON_USE_TYPE_SLOTS +static CYTHON_INLINE PyObject *__Pyx_PyObject_GetItem(PyObject *obj, PyObject* key); +#else +#define __Pyx_PyObject_GetItem(obj, key) PyObject_GetItem(obj, key) +#endif + +/* ExtTypeTest.proto */ static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type); +/* BufferFallbackError.proto */ static void __Pyx_RaiseBufferFallbackError(void); +/* RaiseTooManyValuesToUnpack.proto */ static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected); +/* RaiseNeedMoreValuesToUnpack.proto */ static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index); +/* IterFinish.proto */ static CYTHON_INLINE int __Pyx_IterFinish(void); +/* UnpackItemEndCheck.proto */ static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected); -static CYTHON_INLINE int __Pyx_PyDict_Contains(PyObject* item, PyObject* dict, int eq) { +/* PyDictContains.proto */ +static CYTHON_INLINE int __Pyx_PyDict_ContainsTF(PyObject* item, PyObject* dict, int eq) { int result = PyDict_Contains(dict, item); return unlikely(result < 0) ? result : (result == (eq == Py_EQ)); } -#if PY_MAJOR_VERSION >= 3 -static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key) { - PyObject *value; - value = PyDict_GetItemWithError(d, key); - if (unlikely(!value)) { - if (!PyErr_Occurred()) { - PyObject* args = PyTuple_Pack(1, key); - if (likely(args)) - PyErr_SetObject(PyExc_KeyError, args); - Py_XDECREF(args); - } - return NULL; - } - Py_INCREF(value); - return value; -} +/* DictGetItem.proto */ +#if PY_MAJOR_VERSION >= 3 && !CYTHON_COMPILING_IN_PYPY +static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key); +#define __Pyx_PyObject_Dict_GetItem(obj, name)\ + (likely(PyDict_CheckExact(obj)) ?\ + __Pyx_PyDict_GetItem(obj, name) : PyObject_GetItem(obj, name)) #else - #define __Pyx_PyDict_GetItem(d, key) PyObject_GetItem(d, key) +#define __Pyx_PyDict_GetItem(d, key) PyObject_GetItem(d, key) +#define __Pyx_PyObject_Dict_GetItem(obj, name) PyObject_GetItem(obj, name) #endif -#if CYTHON_COMPILING_IN_CPYTHON -#define __Pyx_PyObject_DelAttrStr(o,n) __Pyx_PyObject_SetAttrStr(o,n,NULL) -static CYTHON_INLINE int __Pyx_PyObject_SetAttrStr(PyObject* obj, PyObject* attr_name, PyObject* value) { - PyTypeObject* tp = Py_TYPE(obj); - if (likely(tp->tp_setattro)) - return tp->tp_setattro(obj, attr_name, value); -#if PY_MAJOR_VERSION < 3 - if (likely(tp->tp_setattr)) - return tp->tp_setattr(obj, PyString_AS_STRING(attr_name), value); -#endif - return PyObject_SetAttr(obj, attr_name, value); -} +/* PyObjectSetAttrStr.proto */ +#if CYTHON_USE_TYPE_SLOTS +#define __Pyx_PyObject_DelAttrStr(o,n) __Pyx_PyObject_SetAttrStr(o, n, NULL) +static CYTHON_INLINE int __Pyx_PyObject_SetAttrStr(PyObject* obj, PyObject* attr_name, PyObject* value); #else #define __Pyx_PyObject_DelAttrStr(o,n) PyObject_DelAttr(o,n) #define __Pyx_PyObject_SetAttrStr(o,n,v) PyObject_SetAttr(o,n,v) #endif -#define __Pyx_GetItemInt(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck) \ - (__Pyx_fits_Py_ssize_t(i, type, is_signed) ? \ - __Pyx_GetItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound, boundscheck) : \ - (is_list ? (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) : \ - __Pyx_GetItemInt_Generic(o, to_py_func(i)))) -#define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck) \ - (__Pyx_fits_Py_ssize_t(i, type, is_signed) ? \ - __Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) : \ - (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL)) -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, - int wraparound, int boundscheck); -#define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck) \ - (__Pyx_fits_Py_ssize_t(i, type, is_signed) ? \ - __Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) : \ - (PyErr_SetString(PyExc_IndexError, "tuple index out of range"), (PyObject*)NULL)) -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, - int wraparound, int boundscheck); -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j); -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, - int is_list, int wraparound, int boundscheck); +/* PySequenceContains.proto */ +static CYTHON_INLINE int __Pyx_PySequence_ContainsTF(PyObject* item, PyObject* seq, int eq) { + int result = PySequence_Contains(seq, item); + return unlikely(result < 0) ? result : (result == (eq == Py_EQ)); +} +/* SetItemInt.proto */ +#define __Pyx_SetItemInt(o, i, v, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ + (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ + __Pyx_SetItemInt_Fast(o, (Py_ssize_t)i, v, is_list, wraparound, boundscheck) :\ + (is_list ? (PyErr_SetString(PyExc_IndexError, "list assignment index out of range"), -1) :\ + __Pyx_SetItemInt_Generic(o, to_py_func(i), v))) +static int __Pyx_SetItemInt_Generic(PyObject *o, PyObject *j, PyObject *v); +static CYTHON_INLINE int __Pyx_SetItemInt_Fast(PyObject *o, Py_ssize_t i, PyObject *v, + int is_list, int wraparound, int boundscheck); + +/* PyFloatBinop.proto */ +#if !CYTHON_COMPILING_IN_PYPY +static PyObject* __Pyx_PyFloat_DivideCObj(PyObject *op1, PyObject *op2, double floatval, int inplace); +#else +#define __Pyx_PyFloat_DivideCObj(op1, op2, floatval, inplace)\ + ((inplace ? __Pyx_PyNumber_InPlaceDivide(op1, op2) : __Pyx_PyNumber_Divide(op1, op2))) + #endif + +/* Import.proto */ +static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level); + +/* ImportFrom.proto */ +static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name); + +/* HasAttr.proto */ +static CYTHON_INLINE int __Pyx_HasAttr(PyObject *, PyObject *); + +/* RaiseNoneIterError.proto */ static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void); +/* GetTopmostException.proto */ +#if CYTHON_USE_EXC_INFO_STACK +static _PyErr_StackItem * __Pyx_PyErr_GetTopmostException(PyThreadState *tstate); +#endif + +/* SaveResetException.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_ExceptionSave(type, value, tb) __Pyx__ExceptionSave(__pyx_tstate, type, value, tb) +static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); +#define __Pyx_ExceptionReset(type, value, tb) __Pyx__ExceptionReset(__pyx_tstate, type, value, tb) +static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb); +#else +#define __Pyx_ExceptionSave(type, value, tb) PyErr_GetExcInfo(type, value, tb) +#define __Pyx_ExceptionReset(type, value, tb) PyErr_SetExcInfo(type, value, tb) +#endif + +/* GetException.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_GetException(type, value, tb) __Pyx__GetException(__pyx_tstate, type, value, tb) +static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); +#else +static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb); +#endif + +/* CallNextTpTraverse.proto */ static int __Pyx_call_next_tp_traverse(PyObject* obj, visitproc v, void *a, traverseproc current_tp_traverse); +/* CallNextTpClear.proto */ static void __Pyx_call_next_tp_clear(PyObject* obj, inquiry current_tp_dealloc); +/* PyObject_GenericGetAttrNoDict.proto */ +#if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000 +static CYTHON_INLINE PyObject* __Pyx_PyObject_GenericGetAttrNoDict(PyObject* obj, PyObject* attr_name); +#else +#define __Pyx_PyObject_GenericGetAttrNoDict PyObject_GenericGetAttr +#endif + +/* PyObject_GenericGetAttr.proto */ +#if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000 +static PyObject* __Pyx_PyObject_GenericGetAttr(PyObject* obj, PyObject* attr_name); +#else +#define __Pyx_PyObject_GenericGetAttr PyObject_GenericGetAttr +#endif + +/* SetVTable.proto */ static int __Pyx_SetVtable(PyObject *dict, void *vtable); +/* SetupReduce.proto */ +static int __Pyx_setup_reduce(PyObject* type_obj); + +/* TypeImport.proto */ +#ifndef __PYX_HAVE_RT_ImportType_proto +#define __PYX_HAVE_RT_ImportType_proto +enum __Pyx_ImportType_CheckSize { + __Pyx_ImportType_CheckSize_Error = 0, + __Pyx_ImportType_CheckSize_Warn = 1, + __Pyx_ImportType_CheckSize_Ignore = 2 +}; +static PyTypeObject *__Pyx_ImportType(PyObject* module, const char *module_name, const char *class_name, size_t size, enum __Pyx_ImportType_CheckSize check_size); +#endif + +/* CLineInTraceback.proto */ +#ifdef CYTHON_CLINE_IN_TRACEBACK +#define __Pyx_CLineForTraceback(tstate, c_line) (((CYTHON_CLINE_IN_TRACEBACK)) ? c_line : 0) +#else +static int __Pyx_CLineForTraceback(PyThreadState *tstate, int c_line); +#endif + +/* CodeObjectCache.proto */ typedef struct { - int code_line; PyCodeObject* code_object; + int code_line; } __Pyx_CodeObjectCacheEntry; struct __Pyx_CodeObjectCache { int count; @@ -1258,9 +1884,14 @@ static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int co static PyCodeObject *__pyx_find_code_object(int code_line); static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object); +/* AddTraceback.proto */ static void __Pyx_AddTraceback(const char *funcname, int c_line, int py_line, const char *filename); +/* CIntToPy.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value); + +/* BufferStructDeclare.proto */ typedef struct { Py_ssize_t shape, strides, suboffsets; } __Pyx_Buf_DimInfo; @@ -1283,21 +1914,13 @@ typedef struct { #endif -static Py_ssize_t __Pyx_zeros[] = {0, 0, 0, 0, 0, 0, 0, 0}; -static Py_ssize_t __Pyx_minusones[] = {-1, -1, -1, -1, -1, -1, -1, -1}; - -static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level); - -static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *); - -static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *); - -static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value); - +/* CIntToPy.proto */ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value); +/* CIntToPy.proto */ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value); +/* RealImag.proto */ #if CYTHON_CCOMPLEX #ifdef __cplusplus #define __Pyx_CREAL(z) ((z).real()) @@ -1310,7 +1933,8 @@ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value); #define __Pyx_CREAL(z) ((z).real) #define __Pyx_CIMAG(z) ((z).imag) #endif -#if (defined(_WIN32) || defined(__clang__)) && defined(__cplusplus) && CYTHON_CCOMPLEX +#if defined(__cplusplus) && CYTHON_CCOMPLEX\ + && (defined(_WIN32) || defined(__clang__) || (defined(__GNUC__) && (__GNUC__ >= 5 || __GNUC__ == 4 && __GNUC_MINOR__ >= 4 )) || __cplusplus >= 201103) #define __Pyx_SET_CREAL(z,x) ((z).real(x)) #define __Pyx_SET_CIMAG(z,y) ((z).imag(y)) #else @@ -1318,98 +1942,108 @@ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value); #define __Pyx_SET_CIMAG(z,y) __Pyx_CIMAG(z) = (y) #endif -static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float, float); - +/* Arithmetic.proto */ #if CYTHON_CCOMPLEX - #define __Pyx_c_eqf(a, b) ((a)==(b)) - #define __Pyx_c_sumf(a, b) ((a)+(b)) - #define __Pyx_c_difff(a, b) ((a)-(b)) - #define __Pyx_c_prodf(a, b) ((a)*(b)) - #define __Pyx_c_quotf(a, b) ((a)/(b)) - #define __Pyx_c_negf(a) (-(a)) + #define __Pyx_c_eq_float(a, b) ((a)==(b)) + #define __Pyx_c_sum_float(a, b) ((a)+(b)) + #define __Pyx_c_diff_float(a, b) ((a)-(b)) + #define __Pyx_c_prod_float(a, b) ((a)*(b)) + #define __Pyx_c_quot_float(a, b) ((a)/(b)) + #define __Pyx_c_neg_float(a) (-(a)) #ifdef __cplusplus - #define __Pyx_c_is_zerof(z) ((z)==(float)0) - #define __Pyx_c_conjf(z) (::std::conj(z)) + #define __Pyx_c_is_zero_float(z) ((z)==(float)0) + #define __Pyx_c_conj_float(z) (::std::conj(z)) #if 1 - #define __Pyx_c_absf(z) (::std::abs(z)) - #define __Pyx_c_powf(a, b) (::std::pow(a, b)) + #define __Pyx_c_abs_float(z) (::std::abs(z)) + #define __Pyx_c_pow_float(a, b) (::std::pow(a, b)) #endif #else - #define __Pyx_c_is_zerof(z) ((z)==0) - #define __Pyx_c_conjf(z) (conjf(z)) + #define __Pyx_c_is_zero_float(z) ((z)==0) + #define __Pyx_c_conj_float(z) (conjf(z)) #if 1 - #define __Pyx_c_absf(z) (cabsf(z)) - #define __Pyx_c_powf(a, b) (cpowf(a, b)) + #define __Pyx_c_abs_float(z) (cabsf(z)) + #define __Pyx_c_pow_float(a, b) (cpowf(a, b)) #endif #endif #else - static CYTHON_INLINE int __Pyx_c_eqf(__pyx_t_float_complex, __pyx_t_float_complex); - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sumf(__pyx_t_float_complex, __pyx_t_float_complex); - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_difff(__pyx_t_float_complex, __pyx_t_float_complex); - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prodf(__pyx_t_float_complex, __pyx_t_float_complex); - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quotf(__pyx_t_float_complex, __pyx_t_float_complex); - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_negf(__pyx_t_float_complex); - static CYTHON_INLINE int __Pyx_c_is_zerof(__pyx_t_float_complex); - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conjf(__pyx_t_float_complex); + static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sum_float(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_diff_float(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prod_float(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_neg_float(__pyx_t_float_complex); + static CYTHON_INLINE int __Pyx_c_is_zero_float(__pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conj_float(__pyx_t_float_complex); #if 1 - static CYTHON_INLINE float __Pyx_c_absf(__pyx_t_float_complex); - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_powf(__pyx_t_float_complex, __pyx_t_float_complex); + static CYTHON_INLINE float __Pyx_c_abs_float(__pyx_t_float_complex); + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_pow_float(__pyx_t_float_complex, __pyx_t_float_complex); #endif #endif -static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double, double); - +/* Arithmetic.proto */ #if CYTHON_CCOMPLEX - #define __Pyx_c_eq(a, b) ((a)==(b)) - #define __Pyx_c_sum(a, b) ((a)+(b)) - #define __Pyx_c_diff(a, b) ((a)-(b)) - #define __Pyx_c_prod(a, b) ((a)*(b)) - #define __Pyx_c_quot(a, b) ((a)/(b)) - #define __Pyx_c_neg(a) (-(a)) + #define __Pyx_c_eq_double(a, b) ((a)==(b)) + #define __Pyx_c_sum_double(a, b) ((a)+(b)) + #define __Pyx_c_diff_double(a, b) ((a)-(b)) + #define __Pyx_c_prod_double(a, b) ((a)*(b)) + #define __Pyx_c_quot_double(a, b) ((a)/(b)) + #define __Pyx_c_neg_double(a) (-(a)) #ifdef __cplusplus - #define __Pyx_c_is_zero(z) ((z)==(double)0) - #define __Pyx_c_conj(z) (::std::conj(z)) + #define __Pyx_c_is_zero_double(z) ((z)==(double)0) + #define __Pyx_c_conj_double(z) (::std::conj(z)) #if 1 - #define __Pyx_c_abs(z) (::std::abs(z)) - #define __Pyx_c_pow(a, b) (::std::pow(a, b)) + #define __Pyx_c_abs_double(z) (::std::abs(z)) + #define __Pyx_c_pow_double(a, b) (::std::pow(a, b)) #endif #else - #define __Pyx_c_is_zero(z) ((z)==0) - #define __Pyx_c_conj(z) (conj(z)) + #define __Pyx_c_is_zero_double(z) ((z)==0) + #define __Pyx_c_conj_double(z) (conj(z)) #if 1 - #define __Pyx_c_abs(z) (cabs(z)) - #define __Pyx_c_pow(a, b) (cpow(a, b)) + #define __Pyx_c_abs_double(z) (cabs(z)) + #define __Pyx_c_pow_double(a, b) (cpow(a, b)) #endif #endif #else - static CYTHON_INLINE int __Pyx_c_eq(__pyx_t_double_complex, __pyx_t_double_complex); - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum(__pyx_t_double_complex, __pyx_t_double_complex); - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff(__pyx_t_double_complex, __pyx_t_double_complex); - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod(__pyx_t_double_complex, __pyx_t_double_complex); - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot(__pyx_t_double_complex, __pyx_t_double_complex); - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg(__pyx_t_double_complex); - static CYTHON_INLINE int __Pyx_c_is_zero(__pyx_t_double_complex); - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj(__pyx_t_double_complex); + static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum_double(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff_double(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod_double(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg_double(__pyx_t_double_complex); + static CYTHON_INLINE int __Pyx_c_is_zero_double(__pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj_double(__pyx_t_double_complex); #if 1 - static CYTHON_INLINE double __Pyx_c_abs(__pyx_t_double_complex); - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow(__pyx_t_double_complex, __pyx_t_double_complex); + static CYTHON_INLINE double __Pyx_c_abs_double(__pyx_t_double_complex); + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow_double(__pyx_t_double_complex, __pyx_t_double_complex); #endif #endif +/* CIntToPy.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value); + +/* CIntFromPy.proto */ +static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *); + +/* CIntFromPy.proto */ +static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *); + +/* FastTypeChecks.proto */ +#if CYTHON_COMPILING_IN_CPYTHON +#define __Pyx_TypeCheck(obj, type) __Pyx_IsSubtype(Py_TYPE(obj), (PyTypeObject *)type) +static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b); +static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches(PyObject *err, PyObject *type); +static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches2(PyObject *err, PyObject *type1, PyObject *type2); +#else +#define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type) +#define __Pyx_PyErr_GivenExceptionMatches(err, type) PyErr_GivenExceptionMatches(err, type) +#define __Pyx_PyErr_GivenExceptionMatches2(err, type1, type2) (PyErr_GivenExceptionMatches(err, type1) || PyErr_GivenExceptionMatches(err, type2)) +#endif +#define __Pyx_PyException_Check(obj) __Pyx_TypeCheck(obj, PyExc_Exception) + +/* CheckBinaryVersion.proto */ static int __Pyx_check_binary_version(void); -#if !defined(__Pyx_PyIdentifier_FromString) -#if PY_MAJOR_VERSION < 3 - #define __Pyx_PyIdentifier_FromString(s) PyString_FromString(s) -#else - #define __Pyx_PyIdentifier_FromString(s) PyUnicode_FromString(s) -#endif -#endif - -static PyObject *__Pyx_ImportModule(const char *name); - -static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict); - +/* InitStrings.proto */ static int __Pyx_InitStrings(__Pyx_StringTabEntry *t); static PyObject *__pyx_f_3GPy_6models_18state_space_cython_24Dynamic_Callables_Cython_f_a(CYTHON_UNUSED struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *__pyx_v_self, CYTHON_UNUSED int __pyx_v_k, CYTHON_UNUSED PyArrayObject *__pyx_v_m, CYTHON_UNUSED PyArrayObject *__pyx_v_A, int __pyx_skip_dispatch); /* proto*/ @@ -1446,23 +2080,26 @@ static PyObject *__pyx_f_3GPy_6models_18state_space_cython_22AQcompute_batch_Cyt static PyObject *__pyx_f_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_dAk(struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython *__pyx_v_self, int __pyx_v_k, int __pyx_skip_dispatch); /* proto*/ static PyObject *__pyx_f_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_dQk(struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython *__pyx_v_self, int __pyx_v_k, int __pyx_skip_dispatch); /* proto*/ static PyObject *__pyx_f_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_Q_srk(struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython *__pyx_v_self, int __pyx_v_k, int __pyx_skip_dispatch); /* proto*/ +static PyObject *__pyx_f_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_Q_inverse(struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython *__pyx_v_self, int __pyx_v_k, int __pyx_skip_dispatch, struct __pyx_opt_args_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_Q_inverse *__pyx_optional_args); /* proto*/ /* Module declarations from 'cpython.buffer' */ -/* Module declarations from 'cpython.ref' */ - /* Module declarations from 'libc.string' */ /* Module declarations from 'libc.stdio' */ -/* Module declarations from 'cpython.object' */ - /* Module declarations from '__builtin__' */ /* Module declarations from 'cpython.type' */ static PyTypeObject *__pyx_ptype_7cpython_4type_type = 0; -/* Module declarations from 'libc.stdlib' */ +/* Module declarations from 'cpython' */ + +/* Module declarations from 'cpython.object' */ + +/* Module declarations from 'cpython.ref' */ + +/* Module declarations from 'cpython.mem' */ /* Module declarations from 'numpy' */ @@ -1484,9 +2121,17 @@ static PyTypeObject *__pyx_ptype_3GPy_6models_18state_space_cython_Std_Measureme static PyTypeObject *__pyx_ptype_3GPy_6models_18state_space_cython_Q_handling_Cython = 0; static PyTypeObject *__pyx_ptype_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython = 0; static PyTypeObject *__pyx_ptype_3GPy_6models_18state_space_cython_AQcompute_batch_Cython = 0; +static PyObject *__pyx_f_3GPy_6models_18state_space_cython___pyx_unpickle_Dynamic_Callables_Cython__set_state(struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *, PyObject *); /*proto*/ +static PyObject *__pyx_f_3GPy_6models_18state_space_cython___pyx_unpickle_Measurement_Callables_Cython__set_state(struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *, PyObject *); /*proto*/ +static PyObject *__pyx_f_3GPy_6models_18state_space_cython___pyx_unpickle_R_handling_Cython__set_state(struct __pyx_obj_3GPy_6models_18state_space_cython_R_handling_Cython *, PyObject *); /*proto*/ +static PyObject *__pyx_f_3GPy_6models_18state_space_cython___pyx_unpickle_Std_Measurement_Callables_Cython__set_state(struct __pyx_obj_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython *, PyObject *); /*proto*/ +static PyObject *__pyx_f_3GPy_6models_18state_space_cython___pyx_unpickle_Q_handling_Cython__set_state(struct __pyx_obj_3GPy_6models_18state_space_cython_Q_handling_Cython *, PyObject *); /*proto*/ +static PyObject *__pyx_f_3GPy_6models_18state_space_cython___pyx_unpickle_Std_Dynamic_Callables_Cython__set_state(struct __pyx_obj_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython *, PyObject *); /*proto*/ +static PyObject *__pyx_f_3GPy_6models_18state_space_cython___pyx_unpickle_AQcompute_batch_Cython__set_state(struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython *, PyObject *); /*proto*/ static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_3GPy_6models_18state_space_cython_DTYPE_t = { "DTYPE_t", NULL, sizeof(__pyx_t_3GPy_6models_18state_space_cython_DTYPE_t), { 0 }, 0, 'R', 0, 0 }; static __Pyx_TypeInfo __Pyx_TypeInfo_nn___pyx_t_3GPy_6models_18state_space_cython_DTYPE_int_t = { "DTYPE_int_t", NULL, sizeof(__pyx_t_3GPy_6models_18state_space_cython_DTYPE_int_t), { 0 }, 0, IS_UNSIGNED(__pyx_t_3GPy_6models_18state_space_cython_DTYPE_int_t) ? 'U' : 'I', IS_UNSIGNED(__pyx_t_3GPy_6models_18state_space_cython_DTYPE_int_t), 0 }; #define __Pyx_MODULE_NAME "GPy.models.state_space_cython" +extern int __pyx_module_is_main_GPy__models__state_space_cython; int __pyx_module_is_main_GPy__models__state_space_cython = 0; /* Implementation of 'GPy.models.state_space_cython' */ @@ -1495,272 +2140,264 @@ static PyObject *__pyx_builtin_ValueError; static PyObject *__pyx_builtin_super; static PyObject *__pyx_builtin_range; static PyObject *__pyx_builtin_RuntimeError; -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_24Dynamic_Callables_Cython_f_a(struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *__pyx_v_self, int __pyx_v_k, PyArrayObject *__pyx_v_m, PyArrayObject *__pyx_v_A); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_24Dynamic_Callables_Cython_2Ak(struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *__pyx_v_self, int __pyx_v_k, PyArrayObject *__pyx_v_m, PyArrayObject *__pyx_v_P); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_24Dynamic_Callables_Cython_4Qk(struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_24Dynamic_Callables_Cython_6Q_srk(struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_24Dynamic_Callables_Cython_8dAk(struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_24Dynamic_Callables_Cython_10dQk(struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_24Dynamic_Callables_Cython_12reset(struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *__pyx_v_self, int __pyx_v_compute_derivatives); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_f_h(struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *__pyx_v_self, int __pyx_v_k, PyArrayObject *__pyx_v_m_pred, PyArrayObject *__pyx_v_Hk); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_2Hk(struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *__pyx_v_self, int __pyx_v_k, PyArrayObject *__pyx_v_m_pred, PyArrayObject *__pyx_v_P_pred); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_4Rk(struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_6R_isrk(struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_8dHk(struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_10dRk(struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_12reset(struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *__pyx_v_self, PyObject *__pyx_v_compute_derivatives); /* proto */ -static int __pyx_pf_3GPy_6models_18state_space_cython_17R_handling_Cython___init__(struct __pyx_obj_3GPy_6models_18state_space_cython_R_handling_Cython *__pyx_v_self, PyArrayObject *__pyx_v_R, PyArrayObject *__pyx_v_index, int __pyx_v_R_time_var_index, int __pyx_v_p_unique_R_number, PyArrayObject *__pyx_v_dR); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_17R_handling_Cython_2Rk(struct __pyx_obj_3GPy_6models_18state_space_cython_R_handling_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_17R_handling_Cython_4dRk(struct __pyx_obj_3GPy_6models_18state_space_cython_R_handling_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_17R_handling_Cython_6R_isrk(struct __pyx_obj_3GPy_6models_18state_space_cython_R_handling_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ -static int __pyx_pf_3GPy_6models_18state_space_cython_32Std_Measurement_Callables_Cython___init__(struct __pyx_obj_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython *__pyx_v_self, PyArrayObject *__pyx_v_H, int __pyx_v_H_time_var_index, PyArrayObject *__pyx_v_R, PyArrayObject *__pyx_v_index, int __pyx_v_R_time_var_index, int __pyx_v_unique_R_number, PyArrayObject *__pyx_v_dH, PyArrayObject *__pyx_v_dR); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_32Std_Measurement_Callables_Cython_2f_h(struct __pyx_obj_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython *__pyx_v_self, int __pyx_v_k, PyArrayObject *__pyx_v_m, PyArrayObject *__pyx_v_H); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_32Std_Measurement_Callables_Cython_4Hk(struct __pyx_obj_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython *__pyx_v_self, int __pyx_v_k, PyArrayObject *__pyx_v_m_pred, PyArrayObject *__pyx_v_P_pred); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_32Std_Measurement_Callables_Cython_6dHk(struct __pyx_obj_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ -static int __pyx_pf_3GPy_6models_18state_space_cython_17Q_handling_Cython___init__(struct __pyx_obj_3GPy_6models_18state_space_cython_Q_handling_Cython *__pyx_v_self, PyArrayObject *__pyx_v_Q, PyArrayObject *__pyx_v_index, int __pyx_v_Q_time_var_index, int __pyx_v_p_unique_Q_number, PyArrayObject *__pyx_v_dQ); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_17Q_handling_Cython_2Qk(struct __pyx_obj_3GPy_6models_18state_space_cython_Q_handling_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_17Q_handling_Cython_4dQk(struct __pyx_obj_3GPy_6models_18state_space_cython_Q_handling_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_17Q_handling_Cython_6Q_srk(struct __pyx_obj_3GPy_6models_18state_space_cython_Q_handling_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ -static int __pyx_pf_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython___init__(struct __pyx_obj_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython *__pyx_v_self, PyArrayObject *__pyx_v_A, int __pyx_v_A_time_var_index, PyArrayObject *__pyx_v_Q, PyArrayObject *__pyx_v_index, int __pyx_v_Q_time_var_index, int __pyx_v_unique_Q_number, PyArrayObject *__pyx_v_dA, PyArrayObject *__pyx_v_dQ); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython_2f_a(struct __pyx_obj_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython *__pyx_v_self, int __pyx_v_k, PyArrayObject *__pyx_v_m, PyArrayObject *__pyx_v_A); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython_4Ak(struct __pyx_obj_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython *__pyx_v_self, int __pyx_v_k, PyArrayObject *__pyx_v_m_pred, PyArrayObject *__pyx_v_P_pred); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython_6dAk(struct __pyx_obj_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython_8reset(struct __pyx_obj_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython *__pyx_v_self, int __pyx_v_compute_derivatives); /* proto */ -static int __pyx_pf_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython___init__(struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython *__pyx_v_self, PyArrayObject *__pyx_v_As, PyArrayObject *__pyx_v_Qs, PyArrayObject *__pyx_v_reconstruct_indices, PyArrayObject *__pyx_v_dAs, PyArrayObject *__pyx_v_dQs); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_2f_a(struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython *__pyx_v_self, int __pyx_v_k, PyArrayObject *__pyx_v_m, PyArrayObject *__pyx_v_A); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_4reset(struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython *__pyx_v_self, int __pyx_v_compute_derivatives); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_6Ak(struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython *__pyx_v_self, int __pyx_v_k, PyArrayObject *__pyx_v_m, PyArrayObject *__pyx_v_P); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_8Qk(struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_10dAk(struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_12dQk(struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_14Q_srk(struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython__kalman_prediction_step_SVD_Cython(CYTHON_UNUSED PyObject *__pyx_self, long __pyx_v_k, PyArrayObject *__pyx_v_p_m, PyObject *__pyx_v_p_P, struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *__pyx_v_p_dynamic_callables, int __pyx_v_calc_grad_log_likelihood, PyArrayObject *__pyx_v_p_dm, PyArrayObject *__pyx_v_p_dP); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_2_kalman_update_step_SVD_Cython(CYTHON_UNUSED PyObject *__pyx_self, long __pyx_v_k, PyArrayObject *__pyx_v_p_m, PyObject *__pyx_v_p_P, struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *__pyx_v_p_measurement_callables, PyArrayObject *__pyx_v_measurement, int __pyx_v_calc_log_likelihood, int __pyx_v_calc_grad_log_likelihood, PyArrayObject *__pyx_v_p_dm, PyArrayObject *__pyx_v_p_dP); /* proto */ -static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_4_cont_discr_kalman_filter_raw_Cython(CYTHON_UNUSED PyObject *__pyx_self, int __pyx_v_state_dim, struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *__pyx_v_p_dynamic_callables, struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *__pyx_v_p_measurement_callables, CYTHON_UNUSED PyObject *__pyx_v_X, PyObject *__pyx_v_Y, PyArrayObject *__pyx_v_m_init, PyArrayObject *__pyx_v_P_init, CYTHON_UNUSED PyObject *__pyx_v_p_kalman_filter_type, int __pyx_v_calc_log_likelihood, int __pyx_v_calc_grad_log_likelihood, int __pyx_v_grad_params_no, PyArrayObject *__pyx_v_dm_init, PyArrayObject *__pyx_v_dP_init); /* proto */ -static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */ -static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */ -static PyObject *__pyx_tp_new_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ -static PyObject *__pyx_tp_new_3GPy_6models_18state_space_cython_Measurement_Callables_Cython(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ -static PyObject *__pyx_tp_new_3GPy_6models_18state_space_cython_R_handling_Cython(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ -static PyObject *__pyx_tp_new_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ -static PyObject *__pyx_tp_new_3GPy_6models_18state_space_cython_Q_handling_Cython(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ -static PyObject *__pyx_tp_new_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ -static PyObject *__pyx_tp_new_3GPy_6models_18state_space_cython_AQcompute_batch_Cython(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ -static char __pyx_k_A[] = "A"; -static char __pyx_k_B[] = "B"; -static char __pyx_k_H[] = "H"; -static char __pyx_k_I[] = "I"; -static char __pyx_k_K[] = "K"; -static char __pyx_k_L[] = "L"; -static char __pyx_k_M[] = "M"; -static char __pyx_k_O[] = "O"; -static char __pyx_k_P[] = "P"; -static char __pyx_k_Q[] = "Q"; -static char __pyx_k_R[] = "R"; -static char __pyx_k_S[] = "S"; -static char __pyx_k_T[] = "T"; -static char __pyx_k_U[] = "U"; -static char __pyx_k_X[] = "X"; -static char __pyx_k_Y[] = "Y"; -static char __pyx_k_b[] = "b"; -static char __pyx_k_d[] = "d"; -static char __pyx_k_f[] = "f"; -static char __pyx_k_g[] = "g"; -static char __pyx_k_h[] = "h"; -static char __pyx_k_i[] = "i"; -static char __pyx_k_j[] = "j"; -static char __pyx_k_k[] = "k"; -static char __pyx_k_l[] = "l"; -static char __pyx_k_m[] = "m"; -static char __pyx_k_q[] = "q"; -static char __pyx_k_v[] = "v"; -static char __pyx_k_Ak[] = "Ak"; -static char __pyx_k_As[] = "As"; -static char __pyx_k_Hk[] = "Hk"; -static char __pyx_k_Qk[] = "Qk"; -static char __pyx_k_Qs[] = "Qs"; -static char __pyx_k_Rk[] = "Rk"; -static char __pyx_k_Vh[] = "Vh"; -static char __pyx_k_Zd[] = "Zd"; -static char __pyx_k_Zf[] = "Zf"; -static char __pyx_k_Zg[] = "Zg"; -static char __pyx_k_dA[] = "dA"; -static char __pyx_k_dH[] = "dH"; -static char __pyx_k_dK[] = "dK"; -static char __pyx_k_dQ[] = "dQ"; -static char __pyx_k_dR[] = "dR"; -static char __pyx_k_dS[] = "dS"; -static char __pyx_k_dv[] = "dv"; -static char __pyx_k_np[] = "np"; -static char __pyx_k_pi[] = "pi"; -static char __pyx_k_sp[] = "sp"; -static char __pyx_k_all[] = "all"; -static char __pyx_k_any[] = "any"; -static char __pyx_k_dAk[] = "dAk"; -static char __pyx_k_dAs[] = "dAs"; -static char __pyx_k_dHk[] = "dHk"; -static char __pyx_k_dQk[] = "dQk"; -static char __pyx_k_dQs[] = "dQs"; -static char __pyx_k_dRk[] = "dRk"; -static char __pyx_k_dot[] = "dot"; -static char __pyx_k_f_a[] = "f_a"; -static char __pyx_k_f_h[] = "f_h"; -static char __pyx_k_log[] = "log"; -static char __pyx_k_p_P[] = "p_P"; -static char __pyx_k_p_m[] = "p_m"; -static char __pyx_k_res[] = "res"; -static char __pyx_k_ret[] = "ret"; -static char __pyx_k_sum[] = "sum"; -static char __pyx_k_svd[] = "svd"; -static char __pyx_k_Q_sr[] = "Q_sr"; -static char __pyx_k_axis[] = "axis"; -static char __pyx_k_diag[] = "diag"; -static char __pyx_k_init[] = "__init__"; -static char __pyx_k_main[] = "__main__"; -static char __pyx_k_p_dP[] = "p_dP"; -static char __pyx_k_p_dm[] = "p_dm"; -static char __pyx_k_sqrt[] = "sqrt"; -static char __pyx_k_test[] = "__test__"; -static char __pyx_k_tmp1[] = "tmp1"; -static char __pyx_k_tmp2[] = "tmp2"; -static char __pyx_k_tmp3[] = "tmp3"; -static char __pyx_k_tmp5[] = "tmp5"; -static char __pyx_k_DTYPE[] = "DTYPE"; -static char __pyx_k_P_upd[] = "P_upd"; -static char __pyx_k_Q_srk[] = "Q_srk"; -static char __pyx_k_R_isr[] = "R_isr"; -static char __pyx_k_S_new[] = "S_new"; -static char __pyx_k_S_old[] = "S_old"; -static char __pyx_k_S_svd[] = "S_svd"; -static char __pyx_k_S_upd[] = "S_upd"; -static char __pyx_k_U_upd[] = "U_upd"; -static char __pyx_k_V_new[] = "V_new"; -static char __pyx_k_V_old[] = "V_old"; -static char __pyx_k_dtype[] = "dtype"; -static char __pyx_k_empty[] = "empty"; -static char __pyx_k_index[] = "index"; -static char __pyx_k_int64[] = "int64"; -static char __pyx_k_isnan[] = "isnan"; -static char __pyx_k_m_upd[] = "m_upd"; -static char __pyx_k_numpy[] = "numpy"; -static char __pyx_k_param[] = "param"; -static char __pyx_k_range[] = "range"; -static char __pyx_k_reset[] = "reset"; -static char __pyx_k_scipy[] = "scipy"; -static char __pyx_k_shape[] = "shape"; -static char __pyx_k_super[] = "super"; -static char __pyx_k_zeros[] = "zeros"; -static char __pyx_k_P_init[] = "P_init"; -static char __pyx_k_P_pred[] = "P_pred"; -static char __pyx_k_R_isrk[] = "R_isrk"; -static char __pyx_k_S_pred[] = "S_pred"; -static char __pyx_k_V_pred[] = "V_pred"; -static char __pyx_k_dP_upd[] = "dP_upd"; -static char __pyx_k_dm_upd[] = "dm_upd"; -static char __pyx_k_import[] = "__import__"; -static char __pyx_k_linalg[] = "linalg"; -static char __pyx_k_m_init[] = "m_init"; -static char __pyx_k_m_pred[] = "m_pred"; -static char __pyx_k_nbytes[] = "nbytes"; -static char __pyx_k_unique[] = "unique"; -static char __pyx_k_vstack[] = "vstack"; -static char __pyx_k_dP_init[] = "dP_init"; -static char __pyx_k_dP_pred[] = "dP_pred"; -static char __pyx_k_dm_init[] = "dm_init"; -static char __pyx_k_dm_pred[] = "dm_pred"; -static char __pyx_k_float64[] = "float64"; -static char __pyx_k_regular[] = "regular"; -static char __pyx_k_Prev_cov[] = "Prev_cov"; -static char __pyx_k_steps_no[] = "steps_no"; -static char __pyx_k_DTYPE_int[] = "DTYPE_int"; -static char __pyx_k_prev_mean[] = "prev_mean"; -static char __pyx_k_state_dim[] = "state_dim"; -static char __pyx_k_ValueError[] = "ValueError"; -static char __pyx_k_compute_uv[] = "compute_uv"; -static char __pyx_k_pyx_vtable[] = "__pyx_vtable__"; -static char __pyx_k_svd_1_matr[] = "svd_1_matr"; -static char __pyx_k_svd_2_matr[] = "svd_2_matr"; -static char __pyx_k_measurement[] = "measurement"; -static char __pyx_k_overwrite_a[] = "overwrite_a"; -static char __pyx_k_RuntimeError[] = "RuntimeError"; -static char __pyx_k_check_finite[] = "check_finite"; -static char __pyx_k_k_measurment[] = "k_measurment"; -static char __pyx_k_param_number[] = "param_number"; -static char __pyx_k_dA_all_params[] = "dA_all_params"; -static char __pyx_k_dH_all_params[] = "dH_all_params"; -static char __pyx_k_dQ_all_params[] = "dQ_all_params"; -static char __pyx_k_dR_all_params[] = "dR_all_params"; -static char __pyx_k_full_matrices[] = "full_matrices"; -static char __pyx_k_NotImplemented[] = "NotImplemented"; -static char __pyx_k_grad_params_no[] = "grad_params_no"; -static char __pyx_k_log_likelihood[] = "log_likelihood"; -static char __pyx_k_time_series_no[] = "time_series_no"; -static char __pyx_k_unique_Q_number[] = "unique_Q_number"; -static char __pyx_k_unique_R_number[] = "unique_R_number"; -static char __pyx_k_A_time_var_index[] = "A_time_var_index"; -static char __pyx_k_H_time_var_index[] = "H_time_var_index"; -static char __pyx_k_Q_time_var_index[] = "Q_time_var_index"; -static char __pyx_k_R_time_var_index[] = "R_time_var_index"; -static char __pyx_k_p_unique_Q_number[] = "p_unique_Q_number"; -static char __pyx_k_p_unique_R_number[] = "p_unique_R_number"; -static char __pyx_k_dP_pred_all_params[] = "dP_pred_all_params"; -static char __pyx_k_dm_pred_all_params[] = "dm_pred_all_params"; -static char __pyx_k_total_size_of_data[] = "total_size_of_data"; -static char __pyx_k_calc_log_likelihood[] = "calc_log_likelihood"; -static char __pyx_k_compute_derivatives[] = "compute_derivatives"; -static char __pyx_k_grad_log_likelihood[] = "grad_log_likelihood"; -static char __pyx_k_p_dynamic_callables[] = "p_dynamic_callables"; -static char __pyx_k_reconstruct_indices[] = "reconstruct_indices"; -static char __pyx_k_p_kalman_filter_type[] = "p_kalman_filter_type"; -static char __pyx_k_dA_derivative_is_None[] = "dA derivative is None"; -static char __pyx_k_dH_derivative_is_None[] = "dH derivative is None"; -static char __pyx_k_dQ_derivative_is_None[] = "dQ derivative is None"; -static char __pyx_k_dR_derivative_is_None[] = "dR derivative is None"; -static char __pyx_k_log_likelihood_update[] = "log_likelihood_update"; -static char __pyx_k_measurement_dim_gt_one[] = "measurement_dim_gt_one"; -static char __pyx_k_d_log_likelihood_update[] = "d_log_likelihood_update"; -static char __pyx_k_p_measurement_callables[] = "p_measurement_callables"; -static char __pyx_k_calc_grad_log_likelihood[] = "calc_grad_log_likelihood"; -static char __pyx_k_ndarray_is_not_C_contiguous[] = "ndarray is not C contiguous"; -static char __pyx_k_cython_Ak_is_not_implemented[] = "(cython) Ak is not implemented!"; -static char __pyx_k_cython_Hk_is_not_implemented[] = "(cython) Hk is not implemented!"; -static char __pyx_k_cython_Qk_is_not_implemented[] = "(cython) Qk is not implemented!"; -static char __pyx_k_cython_Rk_is_not_implemented[] = "(cython) Rk is not implemented!"; -static char __pyx_k_GPy_models_state_space_cython[] = "GPy.models.state_space_cython"; -static char __pyx_k_cython_dAk_is_not_implemented[] = "(cython) dAk is not implemented!"; -static char __pyx_k_cython_dQk_is_not_implemented[] = "(cython) dQk is not implemented!"; -static char __pyx_k_cython_f_a_is_not_implemented[] = "(cython) f_a is not implemented!"; -static char __pyx_k_kalman_update_step_SVD_Cython[] = "_kalman_update_step_SVD_Cython"; -static char __pyx_k_Contains_some_cython_code_for_s[] = "\nContains some cython code for state space modelling.\n"; -static char __pyx_k_Nan_values_in_likelihood_update[] = "Nan values in likelihood update!"; -static char __pyx_k_cont_discr_kalman_filter_raw_Cy[] = "_cont_discr_kalman_filter_raw_Cython"; -static char __pyx_k_cython_Q_srk_is_not_implemented[] = "(cython) Q_srk is not implemented!"; -static char __pyx_k_cython_reset_is_not_implemented[] = "(cython) reset is not implemented!"; -static char __pyx_k_kalman_prediction_step_SVD_Cyth[] = "_kalman_prediction_step_SVD_Cython"; -static char __pyx_k_unknown_dtype_code_in_numpy_pxd[] = "unknown dtype code in numpy.pxd (%d)"; -static char __pyx_k_users_agrigori_SpiderOak_sp_hiv[] = "/users/agrigori/SpiderOak/sp_hive/Programming/python/GPy/GPy/models/state_space_cython.pyx"; -static char __pyx_k_Format_string_allocated_too_shor[] = "Format string allocated too short, see comment in numpy.pxd"; -static char __pyx_k_Kalman_Filter_Update_SVD_S_is_ne[] = "Kalman Filter Update SVD: S is negative step %i"; -static char __pyx_k_Measurement_dimension_larger_the[] = "Measurement dimension larger then 1 is currently not supported"; -static char __pyx_k_Nan_measurements_are_currently_n[] = "Nan measurements are currently not supported if\n they are intermixed with not NaN measurements"; -static char __pyx_k_Non_native_byte_order_not_suppor[] = "Non-native byte order not supported"; -static char __pyx_k_ndarray_is_not_Fortran_contiguou[] = "ndarray is not Fortran contiguous"; -static char __pyx_k_Format_string_allocated_too_shor_2[] = "Format string allocated too short."; +static PyObject *__pyx_builtin_ImportError; +static const char __pyx_k_A[] = "A"; +static const char __pyx_k_H[] = "H"; +static const char __pyx_k_K[] = "K"; +static const char __pyx_k_M[] = "M"; +static const char __pyx_k_P[] = "P"; +static const char __pyx_k_Q[] = "Q"; +static const char __pyx_k_R[] = "R"; +static const char __pyx_k_S[] = "S"; +static const char __pyx_k_T[] = "T"; +static const char __pyx_k_U[] = "U"; +static const char __pyx_k_X[] = "X"; +static const char __pyx_k_Y[] = "Y"; +static const char __pyx_k_j[] = "j"; +static const char __pyx_k_k[] = "k"; +static const char __pyx_k_m[] = "m"; +static const char __pyx_k_v[] = "v"; +static const char __pyx_k_Ak[] = "Ak"; +static const char __pyx_k_As[] = "As"; +static const char __pyx_k_Hk[] = "Hk"; +static const char __pyx_k_Qk[] = "Qk"; +static const char __pyx_k_Qs[] = "Qs"; +static const char __pyx_k_Rk[] = "Rk"; +static const char __pyx_k_Vh[] = "Vh"; +static const char __pyx_k_dA[] = "dA"; +static const char __pyx_k_dH[] = "dH"; +static const char __pyx_k_dK[] = "dK"; +static const char __pyx_k_dQ[] = "dQ"; +static const char __pyx_k_dR[] = "dR"; +static const char __pyx_k_dS[] = "dS"; +static const char __pyx_k_dv[] = "dv"; +static const char __pyx_k_np[] = "np"; +static const char __pyx_k_pi[] = "pi"; +static const char __pyx_k_sp[] = "sp"; +static const char __pyx_k_all[] = "all"; +static const char __pyx_k_any[] = "any"; +static const char __pyx_k_dAk[] = "dAk"; +static const char __pyx_k_dAs[] = "dAs"; +static const char __pyx_k_dHk[] = "dHk"; +static const char __pyx_k_dQk[] = "dQk"; +static const char __pyx_k_dQs[] = "dQs"; +static const char __pyx_k_dRk[] = "dRk"; +static const char __pyx_k_dot[] = "dot"; +static const char __pyx_k_f_a[] = "f_a"; +static const char __pyx_k_f_h[] = "f_h"; +static const char __pyx_k_log[] = "log"; +static const char __pyx_k_new[] = "__new__"; +static const char __pyx_k_p_P[] = "p_P"; +static const char __pyx_k_p_m[] = "p_m"; +static const char __pyx_k_res[] = "res"; +static const char __pyx_k_ret[] = "ret"; +static const char __pyx_k_sum[] = "sum"; +static const char __pyx_k_svd[] = "svd"; +static const char __pyx_k_Q_sr[] = "Q_sr"; +static const char __pyx_k_axis[] = "axis"; +static const char __pyx_k_diag[] = "diag"; +static const char __pyx_k_dict[] = "__dict__"; +static const char __pyx_k_init[] = "__init__"; +static const char __pyx_k_main[] = "__main__"; +static const char __pyx_k_name[] = "__name__"; +static const char __pyx_k_p_dP[] = "p_dP"; +static const char __pyx_k_p_dm[] = "p_dm"; +static const char __pyx_k_sqrt[] = "sqrt"; +static const char __pyx_k_test[] = "__test__"; +static const char __pyx_k_tmp1[] = "tmp1"; +static const char __pyx_k_tmp2[] = "tmp2"; +static const char __pyx_k_tmp3[] = "tmp3"; +static const char __pyx_k_tmp5[] = "tmp5"; +static const char __pyx_k_DTYPE[] = "DTYPE"; +static const char __pyx_k_P_upd[] = "P_upd"; +static const char __pyx_k_Q_srk[] = "Q_srk"; +static const char __pyx_k_R_isr[] = "R_isr"; +static const char __pyx_k_S_new[] = "S_new"; +static const char __pyx_k_S_old[] = "S_old"; +static const char __pyx_k_S_svd[] = "S_svd"; +static const char __pyx_k_S_upd[] = "S_upd"; +static const char __pyx_k_U_upd[] = "U_upd"; +static const char __pyx_k_V_new[] = "V_new"; +static const char __pyx_k_V_old[] = "V_old"; +static const char __pyx_k_dtype[] = "dtype"; +static const char __pyx_k_empty[] = "empty"; +static const char __pyx_k_index[] = "index"; +static const char __pyx_k_int64[] = "int64"; +static const char __pyx_k_isnan[] = "isnan"; +static const char __pyx_k_m_upd[] = "m_upd"; +static const char __pyx_k_numpy[] = "numpy"; +static const char __pyx_k_param[] = "param"; +static const char __pyx_k_range[] = "range"; +static const char __pyx_k_reset[] = "reset"; +static const char __pyx_k_scipy[] = "scipy"; +static const char __pyx_k_shape[] = "shape"; +static const char __pyx_k_super[] = "super"; +static const char __pyx_k_zeros[] = "zeros"; +static const char __pyx_k_P_init[] = "P_init"; +static const char __pyx_k_P_pred[] = "P_pred"; +static const char __pyx_k_R_isrk[] = "R_isrk"; +static const char __pyx_k_S_pred[] = "S_pred"; +static const char __pyx_k_V_pred[] = "V_pred"; +static const char __pyx_k_dP_upd[] = "dP_upd"; +static const char __pyx_k_dm_upd[] = "dm_upd"; +static const char __pyx_k_import[] = "__import__"; +static const char __pyx_k_jitter[] = "jitter"; +static const char __pyx_k_linalg[] = "linalg"; +static const char __pyx_k_m_init[] = "m_init"; +static const char __pyx_k_m_pred[] = "m_pred"; +static const char __pyx_k_nbytes[] = "nbytes"; +static const char __pyx_k_pickle[] = "pickle"; +static const char __pyx_k_reduce[] = "__reduce__"; +static const char __pyx_k_unique[] = "unique"; +static const char __pyx_k_update[] = "update"; +static const char __pyx_k_vstack[] = "vstack"; +static const char __pyx_k_dP_init[] = "dP_init"; +static const char __pyx_k_dP_pred[] = "dP_pred"; +static const char __pyx_k_dm_init[] = "dm_init"; +static const char __pyx_k_dm_pred[] = "dm_pred"; +static const char __pyx_k_float64[] = "float64"; +static const char __pyx_k_regular[] = "regular"; +static const char __pyx_k_Prev_cov[] = "Prev_cov"; +static const char __pyx_k_getstate[] = "__getstate__"; +static const char __pyx_k_pyx_type[] = "__pyx_type"; +static const char __pyx_k_setstate[] = "__setstate__"; +static const char __pyx_k_steps_no[] = "steps_no"; +static const char __pyx_k_DTYPE_int[] = "DTYPE_int"; +static const char __pyx_k_Q_inverse[] = "Q_inverse"; +static const char __pyx_k_prev_mean[] = "prev_mean"; +static const char __pyx_k_pyx_state[] = "__pyx_state"; +static const char __pyx_k_reduce_ex[] = "__reduce_ex__"; +static const char __pyx_k_state_dim[] = "state_dim"; +static const char __pyx_k_ValueError[] = "ValueError"; +static const char __pyx_k_compute_uv[] = "compute_uv"; +static const char __pyx_k_pyx_result[] = "__pyx_result"; +static const char __pyx_k_pyx_vtable[] = "__pyx_vtable__"; +static const char __pyx_k_svd_1_matr[] = "svd_1_matr"; +static const char __pyx_k_svd_2_matr[] = "svd_2_matr"; +static const char __pyx_k_ImportError[] = "ImportError"; +static const char __pyx_k_PickleError[] = "PickleError"; +static const char __pyx_k_measurement[] = "measurement"; +static const char __pyx_k_overwrite_a[] = "overwrite_a"; +static const char __pyx_k_RuntimeError[] = "RuntimeError"; +static const char __pyx_k_check_finite[] = "check_finite"; +static const char __pyx_k_k_measurment[] = "k_measurment"; +static const char __pyx_k_param_number[] = "param_number"; +static const char __pyx_k_pyx_checksum[] = "__pyx_checksum"; +static const char __pyx_k_stringsource[] = "stringsource"; +static const char __pyx_k_dA_all_params[] = "dA_all_params"; +static const char __pyx_k_dH_all_params[] = "dH_all_params"; +static const char __pyx_k_dQ_all_params[] = "dQ_all_params"; +static const char __pyx_k_dR_all_params[] = "dR_all_params"; +static const char __pyx_k_full_matrices[] = "full_matrices"; +static const char __pyx_k_reduce_cython[] = "__reduce_cython__"; +static const char __pyx_k_NotImplemented[] = "NotImplemented"; +static const char __pyx_k_Q_inverse_dict[] = "Q_inverse_dict"; +static const char __pyx_k_grad_params_no[] = "grad_params_no"; +static const char __pyx_k_log_likelihood[] = "log_likelihood"; +static const char __pyx_k_time_series_no[] = "time_series_no"; +static const char __pyx_k_pyx_PickleError[] = "__pyx_PickleError"; +static const char __pyx_k_setstate_cython[] = "__setstate_cython__"; +static const char __pyx_k_unique_Q_number[] = "unique_Q_number"; +static const char __pyx_k_unique_R_number[] = "unique_R_number"; +static const char __pyx_k_A_time_var_index[] = "A_time_var_index"; +static const char __pyx_k_H_time_var_index[] = "H_time_var_index"; +static const char __pyx_k_Q_time_var_index[] = "Q_time_var_index"; +static const char __pyx_k_R_time_var_index[] = "R_time_var_index"; +static const char __pyx_k_Q_handling_Cython[] = "Q_handling_Cython"; +static const char __pyx_k_R_handling_Cython[] = "R_handling_Cython"; +static const char __pyx_k_p_unique_Q_number[] = "p_unique_Q_number"; +static const char __pyx_k_p_unique_R_number[] = "p_unique_R_number"; +static const char __pyx_k_Q_square_root_dict[] = "Q_square_root_dict"; +static const char __pyx_k_Q_suqare_root_dict[] = "Q_suqare_root_dict"; +static const char __pyx_k_cline_in_traceback[] = "cline_in_traceback"; +static const char __pyx_k_dP_pred_all_params[] = "dP_pred_all_params"; +static const char __pyx_k_dm_pred_all_params[] = "dm_pred_all_params"; +static const char __pyx_k_total_size_of_data[] = "total_size_of_data"; +static const char __pyx_k_calc_log_likelihood[] = "calc_log_likelihood"; +static const char __pyx_k_compute_derivatives[] = "compute_derivatives"; +static const char __pyx_k_grad_log_likelihood[] = "grad_log_likelihood"; +static const char __pyx_k_p_dynamic_callables[] = "p_dynamic_callables"; +static const char __pyx_k_reconstruct_indices[] = "reconstruct_indices"; +static const char __pyx_k_p_kalman_filter_type[] = "p_kalman_filter_type"; +static const char __pyx_k_dA_derivative_is_None[] = "dA derivative is None"; +static const char __pyx_k_dH_derivative_is_None[] = "dH derivative is None"; +static const char __pyx_k_dQ_derivative_is_None[] = "dQ derivative is None"; +static const char __pyx_k_dR_derivative_is_None[] = "dR derivative is None"; +static const char __pyx_k_log_likelihood_update[] = "log_likelihood_update"; +static const char __pyx_k_AQcompute_batch_Cython[] = "AQcompute_batch_Cython"; +static const char __pyx_k_measurement_dim_gt_one[] = "measurement_dim_gt_one"; +static const char __pyx_k_state_space_cython_pyx[] = "state_space_cython.pyx"; +static const char __pyx_k_d_log_likelihood_update[] = "d_log_likelihood_update"; +static const char __pyx_k_p_measurement_callables[] = "p_measurement_callables"; +static const char __pyx_k_Dynamic_Callables_Cython[] = "Dynamic_Callables_Cython"; +static const char __pyx_k_calc_grad_log_likelihood[] = "calc_grad_log_likelihood"; +static const char __pyx_k_ndarray_is_not_C_contiguous[] = "ndarray is not C contiguous"; +static const char __pyx_k_Measurement_Callables_Cython[] = "Measurement_Callables_Cython"; +static const char __pyx_k_Std_Dynamic_Callables_Cython[] = "Std_Dynamic_Callables_Cython"; +static const char __pyx_k_cython_Ak_is_not_implemented[] = "(cython) Ak is not implemented!"; +static const char __pyx_k_cython_Hk_is_not_implemented[] = "(cython) Hk is not implemented!"; +static const char __pyx_k_cython_Qk_is_not_implemented[] = "(cython) Qk is not implemented!"; +static const char __pyx_k_cython_Rk_is_not_implemented[] = "(cython) Rk is not implemented!"; +static const char __pyx_k_GPy_models_state_space_cython[] = "GPy.models.state_space_cython"; +static const char __pyx_k_cython_dAk_is_not_implemented[] = "(cython) dAk is not implemented!"; +static const char __pyx_k_cython_dQk_is_not_implemented[] = "(cython) dQk is not implemented!"; +static const char __pyx_k_cython_f_a_is_not_implemented[] = "(cython) f_a is not implemented!"; +static const char __pyx_k_kalman_update_step_SVD_Cython[] = "_kalman_update_step_SVD_Cython"; +static const char __pyx_k_pyx_unpickle_AQcompute_batch_C[] = "__pyx_unpickle_AQcompute_batch_Cython"; +static const char __pyx_k_pyx_unpickle_Dynamic_Callables[] = "__pyx_unpickle_Dynamic_Callables_Cython"; +static const char __pyx_k_pyx_unpickle_Measurement_Calla[] = "__pyx_unpickle_Measurement_Callables_Cython"; +static const char __pyx_k_pyx_unpickle_Q_handling_Cython[] = "__pyx_unpickle_Q_handling_Cython"; +static const char __pyx_k_pyx_unpickle_R_handling_Cython[] = "__pyx_unpickle_R_handling_Cython"; +static const char __pyx_k_pyx_unpickle_Std_Dynamic_Calla[] = "__pyx_unpickle_Std_Dynamic_Callables_Cython"; +static const char __pyx_k_pyx_unpickle_Std_Measurement_C[] = "__pyx_unpickle_Std_Measurement_Callables_Cython"; +static const char __pyx_k_Contains_some_cython_code_for_s[] = "\nContains some cython code for state space modelling.\n"; +static const char __pyx_k_Nan_values_in_likelihood_update[] = "Nan values in likelihood update!"; +static const char __pyx_k_cont_discr_kalman_filter_raw_Cy[] = "_cont_discr_kalman_filter_raw_Cython"; +static const char __pyx_k_cython_Q_srk_is_not_implemented[] = "(cython) Q_srk is not implemented!"; +static const char __pyx_k_cython_reset_is_not_implemented[] = "(cython) reset is not implemented!"; +static const char __pyx_k_kalman_prediction_step_SVD_Cyth[] = "_kalman_prediction_step_SVD_Cython"; +static const char __pyx_k_numpy_core_multiarray_failed_to[] = "numpy.core.multiarray failed to import"; +static const char __pyx_k_unknown_dtype_code_in_numpy_pxd[] = "unknown dtype code in numpy.pxd (%d)"; +static const char __pyx_k_Format_string_allocated_too_shor[] = "Format string allocated too short, see comment in numpy.pxd"; +static const char __pyx_k_Incompatible_checksums_s_vs_0x14[] = "Incompatible checksums (%s vs 0x146e1f7 = (As, Q, Q_square_root, Q_svd_dict, Q_time_var_index, Qs, dAs, dQ, dQs, index, last_k, reconstruct_indices, svd_each_time))"; +static const char __pyx_k_Incompatible_checksums_s_vs_0x70[] = "Incompatible checksums (%s vs 0x706c35f = (H, H_time_var_index, R, R_square_root, R_time_var_index, dH, dR, index, svd_each_time))"; +static const char __pyx_k_Incompatible_checksums_s_vs_0x77[] = "Incompatible checksums (%s vs 0x77b5360 = (Q, Q_square_root, Q_time_var_index, dQ, index, svd_each_time))"; +static const char __pyx_k_Incompatible_checksums_s_vs_0x9e[] = "Incompatible checksums (%s vs 0x9e97ca7 = (R, R_square_root, R_time_var_index, dR, index, svd_each_time))"; +static const char __pyx_k_Incompatible_checksums_s_vs_0xd4[] = "Incompatible checksums (%s vs 0xd41d8cd = ())"; +static const char __pyx_k_Incompatible_checksums_s_vs_0xdf[] = "Incompatible checksums (%s vs 0xdff0f56 = (A, A_time_var_index, Q, Q_square_root, Q_time_var_index, dA, dQ, index, svd_each_time))"; +static const char __pyx_k_Kalman_Filter_Update_SVD_S_is_ne[] = "Kalman Filter Update SVD: S is negative step %i"; +static const char __pyx_k_Measurement_dimension_larger_the[] = "Measurement dimension larger then 1 is currently not supported"; +static const char __pyx_k_Nan_measurements_are_currently_n[] = "Nan measurements are currently not supported if\n they are intermixed with not NaN measurements"; +static const char __pyx_k_Non_native_byte_order_not_suppor[] = "Non-native byte order not supported"; +static const char __pyx_k_Std_Measurement_Callables_Cython[] = "Std_Measurement_Callables_Cython"; +static const char __pyx_k_ndarray_is_not_Fortran_contiguou[] = "ndarray is not Fortran contiguous"; +static const char __pyx_k_numpy_core_umath_failed_to_impor[] = "numpy.core.umath failed to import"; +static const char __pyx_k_Format_string_allocated_too_shor_2[] = "Format string allocated too short."; static PyObject *__pyx_n_s_A; +static PyObject *__pyx_n_s_AQcompute_batch_Cython; static PyObject *__pyx_n_s_A_time_var_index; static PyObject *__pyx_n_s_Ak; static PyObject *__pyx_n_s_As; static PyObject *__pyx_n_s_DTYPE; static PyObject *__pyx_n_s_DTYPE_int; +static PyObject *__pyx_n_s_Dynamic_Callables_Cython; static PyObject *__pyx_kp_u_Format_string_allocated_too_shor; static PyObject *__pyx_kp_u_Format_string_allocated_too_shor_2; static PyObject *__pyx_n_s_GPy_models_state_space_cython; static PyObject *__pyx_n_s_H; static PyObject *__pyx_n_s_H_time_var_index; static PyObject *__pyx_n_s_Hk; +static PyObject *__pyx_n_s_ImportError; +static PyObject *__pyx_kp_s_Incompatible_checksums_s_vs_0x14; +static PyObject *__pyx_kp_s_Incompatible_checksums_s_vs_0x70; +static PyObject *__pyx_kp_s_Incompatible_checksums_s_vs_0x77; +static PyObject *__pyx_kp_s_Incompatible_checksums_s_vs_0x9e; +static PyObject *__pyx_kp_s_Incompatible_checksums_s_vs_0xd4; +static PyObject *__pyx_kp_s_Incompatible_checksums_s_vs_0xdf; static PyObject *__pyx_n_s_K; static PyObject *__pyx_kp_s_Kalman_Filter_Update_SVD_S_is_ne; static PyObject *__pyx_n_s_M; +static PyObject *__pyx_n_s_Measurement_Callables_Cython; static PyObject *__pyx_kp_s_Measurement_dimension_larger_the; static PyObject *__pyx_kp_s_Nan_measurements_are_currently_n; static PyObject *__pyx_kp_s_Nan_values_in_likelihood_update; @@ -1770,14 +2407,21 @@ static PyObject *__pyx_n_s_P; static PyObject *__pyx_n_s_P_init; static PyObject *__pyx_n_s_P_pred; static PyObject *__pyx_n_s_P_upd; +static PyObject *__pyx_n_s_PickleError; static PyObject *__pyx_n_s_Prev_cov; static PyObject *__pyx_n_s_Q; +static PyObject *__pyx_n_s_Q_handling_Cython; +static PyObject *__pyx_n_s_Q_inverse; +static PyObject *__pyx_n_s_Q_inverse_dict; +static PyObject *__pyx_n_s_Q_square_root_dict; static PyObject *__pyx_n_s_Q_sr; static PyObject *__pyx_n_s_Q_srk; +static PyObject *__pyx_n_s_Q_suqare_root_dict; static PyObject *__pyx_n_s_Q_time_var_index; static PyObject *__pyx_n_s_Qk; static PyObject *__pyx_n_s_Qs; static PyObject *__pyx_n_s_R; +static PyObject *__pyx_n_s_R_handling_Cython; static PyObject *__pyx_n_s_R_isr; static PyObject *__pyx_n_s_R_isrk; static PyObject *__pyx_n_s_R_time_var_index; @@ -1789,6 +2433,8 @@ static PyObject *__pyx_n_s_S_old; static PyObject *__pyx_n_s_S_pred; static PyObject *__pyx_n_s_S_svd; static PyObject *__pyx_n_s_S_upd; +static PyObject *__pyx_n_s_Std_Dynamic_Callables_Cython; +static PyObject *__pyx_n_s_Std_Measurement_Callables_Cython; static PyObject *__pyx_n_s_T; static PyObject *__pyx_n_s_U; static PyObject *__pyx_n_s_U_upd; @@ -1805,6 +2451,7 @@ static PyObject *__pyx_n_s_axis; static PyObject *__pyx_n_s_calc_grad_log_likelihood; static PyObject *__pyx_n_s_calc_log_likelihood; static PyObject *__pyx_n_s_check_finite; +static PyObject *__pyx_n_s_cline_in_traceback; static PyObject *__pyx_n_s_compute_derivatives; static PyObject *__pyx_n_s_compute_uv; static PyObject *__pyx_n_s_cont_discr_kalman_filter_raw_Cy; @@ -1843,6 +2490,7 @@ static PyObject *__pyx_n_s_dRk; static PyObject *__pyx_n_s_dS; static PyObject *__pyx_n_s_d_log_likelihood_update; static PyObject *__pyx_n_s_diag; +static PyObject *__pyx_n_s_dict; static PyObject *__pyx_n_s_dm_init; static PyObject *__pyx_n_s_dm_pred; static PyObject *__pyx_n_s_dm_pred_all_params; @@ -1855,6 +2503,7 @@ static PyObject *__pyx_n_s_f_a; static PyObject *__pyx_n_s_f_h; static PyObject *__pyx_n_s_float64; static PyObject *__pyx_n_s_full_matrices; +static PyObject *__pyx_n_s_getstate; static PyObject *__pyx_n_s_grad_log_likelihood; static PyObject *__pyx_n_s_grad_params_no; static PyObject *__pyx_n_s_import; @@ -1863,6 +2512,7 @@ static PyObject *__pyx_n_s_init; static PyObject *__pyx_n_s_int64; static PyObject *__pyx_n_s_isnan; static PyObject *__pyx_n_s_j; +static PyObject *__pyx_n_s_jitter; static PyObject *__pyx_n_s_k; static PyObject *__pyx_n_s_k_measurment; static PyObject *__pyx_n_s_kalman_prediction_step_SVD_Cyth; @@ -1878,11 +2528,15 @@ static PyObject *__pyx_n_s_m_upd; static PyObject *__pyx_n_s_main; static PyObject *__pyx_n_s_measurement; static PyObject *__pyx_n_s_measurement_dim_gt_one; +static PyObject *__pyx_n_s_name; static PyObject *__pyx_n_s_nbytes; static PyObject *__pyx_kp_u_ndarray_is_not_C_contiguous; static PyObject *__pyx_kp_u_ndarray_is_not_Fortran_contiguou; +static PyObject *__pyx_n_s_new; static PyObject *__pyx_n_s_np; static PyObject *__pyx_n_s_numpy; +static PyObject *__pyx_kp_s_numpy_core_multiarray_failed_to; +static PyObject *__pyx_kp_s_numpy_core_umath_failed_to_impor; static PyObject *__pyx_n_s_overwrite_a; static PyObject *__pyx_n_s_p_P; static PyObject *__pyx_n_s_p_dP; @@ -1896,20 +2550,40 @@ static PyObject *__pyx_n_s_p_unique_R_number; static PyObject *__pyx_n_s_param; static PyObject *__pyx_n_s_param_number; static PyObject *__pyx_n_s_pi; +static PyObject *__pyx_n_s_pickle; static PyObject *__pyx_n_s_prev_mean; +static PyObject *__pyx_n_s_pyx_PickleError; +static PyObject *__pyx_n_s_pyx_checksum; +static PyObject *__pyx_n_s_pyx_result; +static PyObject *__pyx_n_s_pyx_state; +static PyObject *__pyx_n_s_pyx_type; +static PyObject *__pyx_n_s_pyx_unpickle_AQcompute_batch_C; +static PyObject *__pyx_n_s_pyx_unpickle_Dynamic_Callables; +static PyObject *__pyx_n_s_pyx_unpickle_Measurement_Calla; +static PyObject *__pyx_n_s_pyx_unpickle_Q_handling_Cython; +static PyObject *__pyx_n_s_pyx_unpickle_R_handling_Cython; +static PyObject *__pyx_n_s_pyx_unpickle_Std_Dynamic_Calla; +static PyObject *__pyx_n_s_pyx_unpickle_Std_Measurement_C; static PyObject *__pyx_n_s_pyx_vtable; static PyObject *__pyx_n_s_range; static PyObject *__pyx_n_s_reconstruct_indices; +static PyObject *__pyx_n_s_reduce; +static PyObject *__pyx_n_s_reduce_cython; +static PyObject *__pyx_n_s_reduce_ex; static PyObject *__pyx_n_s_regular; static PyObject *__pyx_n_s_res; static PyObject *__pyx_n_s_reset; static PyObject *__pyx_n_s_ret; static PyObject *__pyx_n_s_scipy; +static PyObject *__pyx_n_s_setstate; +static PyObject *__pyx_n_s_setstate_cython; static PyObject *__pyx_n_s_shape; static PyObject *__pyx_n_s_sp; static PyObject *__pyx_n_s_sqrt; static PyObject *__pyx_n_s_state_dim; +static PyObject *__pyx_kp_s_state_space_cython_pyx; static PyObject *__pyx_n_s_steps_no; +static PyObject *__pyx_kp_s_stringsource; static PyObject *__pyx_n_s_sum; static PyObject *__pyx_n_s_super; static PyObject *__pyx_n_s_svd; @@ -1926,10 +2600,83 @@ static PyObject *__pyx_n_s_unique; static PyObject *__pyx_n_s_unique_Q_number; static PyObject *__pyx_n_s_unique_R_number; static PyObject *__pyx_kp_u_unknown_dtype_code_in_numpy_pxd; -static PyObject *__pyx_kp_s_users_agrigori_SpiderOak_sp_hiv; +static PyObject *__pyx_n_s_update; static PyObject *__pyx_n_s_v; static PyObject *__pyx_n_s_vstack; static PyObject *__pyx_n_s_zeros; +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_24Dynamic_Callables_Cython_f_a(struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *__pyx_v_self, int __pyx_v_k, PyArrayObject *__pyx_v_m, PyArrayObject *__pyx_v_A); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_24Dynamic_Callables_Cython_2Ak(struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *__pyx_v_self, int __pyx_v_k, PyArrayObject *__pyx_v_m, PyArrayObject *__pyx_v_P); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_24Dynamic_Callables_Cython_4Qk(struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_24Dynamic_Callables_Cython_6Q_srk(struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_24Dynamic_Callables_Cython_8dAk(struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_24Dynamic_Callables_Cython_10dQk(struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_24Dynamic_Callables_Cython_12reset(struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *__pyx_v_self, int __pyx_v_compute_derivatives); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_24Dynamic_Callables_Cython_14__reduce_cython__(struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_24Dynamic_Callables_Cython_16__setstate_cython__(struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_f_h(struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *__pyx_v_self, int __pyx_v_k, PyArrayObject *__pyx_v_m_pred, PyArrayObject *__pyx_v_Hk); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_2Hk(struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *__pyx_v_self, int __pyx_v_k, PyArrayObject *__pyx_v_m_pred, PyArrayObject *__pyx_v_P_pred); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_4Rk(struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_6R_isrk(struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_8dHk(struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_10dRk(struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_12reset(struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *__pyx_v_self, PyObject *__pyx_v_compute_derivatives); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_14__reduce_cython__(struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_16__setstate_cython__(struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */ +static int __pyx_pf_3GPy_6models_18state_space_cython_17R_handling_Cython___init__(struct __pyx_obj_3GPy_6models_18state_space_cython_R_handling_Cython *__pyx_v_self, PyArrayObject *__pyx_v_R, PyArrayObject *__pyx_v_index, int __pyx_v_R_time_var_index, int __pyx_v_p_unique_R_number, PyArrayObject *__pyx_v_dR); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_17R_handling_Cython_2Rk(struct __pyx_obj_3GPy_6models_18state_space_cython_R_handling_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_17R_handling_Cython_4dRk(struct __pyx_obj_3GPy_6models_18state_space_cython_R_handling_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_17R_handling_Cython_6R_isrk(struct __pyx_obj_3GPy_6models_18state_space_cython_R_handling_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_17R_handling_Cython_8__reduce_cython__(struct __pyx_obj_3GPy_6models_18state_space_cython_R_handling_Cython *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_17R_handling_Cython_10__setstate_cython__(struct __pyx_obj_3GPy_6models_18state_space_cython_R_handling_Cython *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */ +static int __pyx_pf_3GPy_6models_18state_space_cython_32Std_Measurement_Callables_Cython___init__(struct __pyx_obj_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython *__pyx_v_self, PyArrayObject *__pyx_v_H, int __pyx_v_H_time_var_index, PyArrayObject *__pyx_v_R, PyArrayObject *__pyx_v_index, int __pyx_v_R_time_var_index, int __pyx_v_unique_R_number, PyArrayObject *__pyx_v_dH, PyArrayObject *__pyx_v_dR); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_32Std_Measurement_Callables_Cython_2f_h(struct __pyx_obj_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython *__pyx_v_self, int __pyx_v_k, PyArrayObject *__pyx_v_m, PyArrayObject *__pyx_v_H); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_32Std_Measurement_Callables_Cython_4Hk(struct __pyx_obj_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython *__pyx_v_self, int __pyx_v_k, PyArrayObject *__pyx_v_m_pred, PyArrayObject *__pyx_v_P_pred); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_32Std_Measurement_Callables_Cython_6dHk(struct __pyx_obj_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_32Std_Measurement_Callables_Cython_8__reduce_cython__(struct __pyx_obj_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_32Std_Measurement_Callables_Cython_10__setstate_cython__(struct __pyx_obj_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */ +static int __pyx_pf_3GPy_6models_18state_space_cython_17Q_handling_Cython___init__(struct __pyx_obj_3GPy_6models_18state_space_cython_Q_handling_Cython *__pyx_v_self, PyArrayObject *__pyx_v_Q, PyArrayObject *__pyx_v_index, int __pyx_v_Q_time_var_index, int __pyx_v_p_unique_Q_number, PyArrayObject *__pyx_v_dQ); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_17Q_handling_Cython_2Qk(struct __pyx_obj_3GPy_6models_18state_space_cython_Q_handling_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_17Q_handling_Cython_4dQk(struct __pyx_obj_3GPy_6models_18state_space_cython_Q_handling_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_17Q_handling_Cython_6Q_srk(struct __pyx_obj_3GPy_6models_18state_space_cython_Q_handling_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_17Q_handling_Cython_8__reduce_cython__(struct __pyx_obj_3GPy_6models_18state_space_cython_Q_handling_Cython *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_17Q_handling_Cython_10__setstate_cython__(struct __pyx_obj_3GPy_6models_18state_space_cython_Q_handling_Cython *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */ +static int __pyx_pf_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython___init__(struct __pyx_obj_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython *__pyx_v_self, PyArrayObject *__pyx_v_A, int __pyx_v_A_time_var_index, PyArrayObject *__pyx_v_Q, PyArrayObject *__pyx_v_index, int __pyx_v_Q_time_var_index, int __pyx_v_unique_Q_number, PyArrayObject *__pyx_v_dA, PyArrayObject *__pyx_v_dQ); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython_2f_a(struct __pyx_obj_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython *__pyx_v_self, int __pyx_v_k, PyArrayObject *__pyx_v_m, PyArrayObject *__pyx_v_A); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython_4Ak(struct __pyx_obj_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython *__pyx_v_self, int __pyx_v_k, PyArrayObject *__pyx_v_m_pred, PyArrayObject *__pyx_v_P_pred); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython_6dAk(struct __pyx_obj_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython_8reset(struct __pyx_obj_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython *__pyx_v_self, int __pyx_v_compute_derivatives); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython_10__reduce_cython__(struct __pyx_obj_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython_12__setstate_cython__(struct __pyx_obj_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */ +static int __pyx_pf_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython___init__(struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython *__pyx_v_self, PyArrayObject *__pyx_v_As, PyArrayObject *__pyx_v_Qs, PyArrayObject *__pyx_v_reconstruct_indices, PyArrayObject *__pyx_v_dAs, PyArrayObject *__pyx_v_dQs); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_2f_a(struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython *__pyx_v_self, int __pyx_v_k, PyArrayObject *__pyx_v_m, PyArrayObject *__pyx_v_A); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_4reset(struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython *__pyx_v_self, int __pyx_v_compute_derivatives); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_6Ak(struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython *__pyx_v_self, int __pyx_v_k, PyArrayObject *__pyx_v_m, PyArrayObject *__pyx_v_P); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_8Qk(struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_10dAk(struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_12dQk(struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_14Q_srk(struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython *__pyx_v_self, int __pyx_v_k); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_16Q_inverse(struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython *__pyx_v_self, int __pyx_v_k, float __pyx_v_jitter); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_18__reduce_cython__(struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_20__setstate_cython__(struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython__kalman_prediction_step_SVD_Cython(CYTHON_UNUSED PyObject *__pyx_self, long __pyx_v_k, PyArrayObject *__pyx_v_p_m, PyObject *__pyx_v_p_P, struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *__pyx_v_p_dynamic_callables, int __pyx_v_calc_grad_log_likelihood, PyArrayObject *__pyx_v_p_dm, PyArrayObject *__pyx_v_p_dP); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_2_kalman_update_step_SVD_Cython(CYTHON_UNUSED PyObject *__pyx_self, long __pyx_v_k, PyArrayObject *__pyx_v_p_m, PyObject *__pyx_v_p_P, struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *__pyx_v_p_measurement_callables, PyArrayObject *__pyx_v_measurement, int __pyx_v_calc_log_likelihood, int __pyx_v_calc_grad_log_likelihood, PyArrayObject *__pyx_v_p_dm, PyArrayObject *__pyx_v_p_dP); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_4_cont_discr_kalman_filter_raw_Cython(CYTHON_UNUSED PyObject *__pyx_self, int __pyx_v_state_dim, struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *__pyx_v_p_dynamic_callables, struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *__pyx_v_p_measurement_callables, CYTHON_UNUSED PyObject *__pyx_v_X, PyObject *__pyx_v_Y, PyArrayObject *__pyx_v_m_init, PyArrayObject *__pyx_v_P_init, CYTHON_UNUSED PyObject *__pyx_v_p_kalman_filter_type, int __pyx_v_calc_log_likelihood, int __pyx_v_calc_grad_log_likelihood, int __pyx_v_grad_params_no, PyArrayObject *__pyx_v_dm_init, PyArrayObject *__pyx_v_dP_init); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_6__pyx_unpickle_Dynamic_Callables_Cython(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_8__pyx_unpickle_Measurement_Callables_Cython(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_10__pyx_unpickle_R_handling_Cython(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_12__pyx_unpickle_Std_Measurement_Callables_Cython(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_14__pyx_unpickle_Q_handling_Cython(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_16__pyx_unpickle_Std_Dynamic_Callables_Cython(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */ +static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_18__pyx_unpickle_AQcompute_batch_Cython(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */ +static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */ +static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */ +static PyObject *__pyx_tp_new_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ +static PyObject *__pyx_tp_new_3GPy_6models_18state_space_cython_Measurement_Callables_Cython(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ +static PyObject *__pyx_tp_new_3GPy_6models_18state_space_cython_R_handling_Cython(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ +static PyObject *__pyx_tp_new_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ +static PyObject *__pyx_tp_new_3GPy_6models_18state_space_cython_Q_handling_Cython(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ +static PyObject *__pyx_tp_new_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ +static PyObject *__pyx_tp_new_3GPy_6models_18state_space_cython_AQcompute_batch_Cython(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_float_0_5; static PyObject *__pyx_float_1_0; static PyObject *__pyx_float_1eneg_17; @@ -1937,6 +2684,12 @@ static PyObject *__pyx_float_neg_0_5; static PyObject *__pyx_int_0; static PyObject *__pyx_int_1; static PyObject *__pyx_int_2; +static PyObject *__pyx_int_21422583; +static PyObject *__pyx_int_117883743; +static PyObject *__pyx_int_125522784; +static PyObject *__pyx_int_166296743; +static PyObject *__pyx_int_222419149; +static PyObject *__pyx_int_234819414; static PyObject *__pyx_tuple_; static PyObject *__pyx_tuple__2; static PyObject *__pyx_tuple__3; @@ -1946,117 +2699,43 @@ static PyObject *__pyx_tuple__6; static PyObject *__pyx_tuple__7; static PyObject *__pyx_tuple__8; static PyObject *__pyx_tuple__9; -static PyObject *__pyx_slice__15; -static PyObject *__pyx_slice__16; -static PyObject *__pyx_slice__18; 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Total number of iterations equal to the \n number of measurements.\n \n p_m: matrix of size (state_dim, time_series_no)\n Mean value from the previous step. For \"multiple time series mode\" \n it is matrix, second dimension of which correspond to different\n time series.\n \n p_P: tuple (Prev_cov, S, V)\n Covariance matrix from the previous step and its SVD decomposition.\n Prev_cov = V * S * V.T The tuple is (Prev_cov, S, V) \n \n p_a: function (k, x_{k-1}, A_{k}). Dynamic function. \n k (iteration number), starts at 0\n x_{k-1} State from the previous step\n A_{k} Jacobian matrices of f_a. In the linear case it is exactly A_{k}.\n \n p_f_A: function (k, m, P) return Jacobian of dynamic function, it is\n passed into p_a.\n k (iteration number), starts at 0\n m: point where Jacobian is evaluated\n P: parameter for Jacobian, usually covariance matrix.\n \n p_f_Q: function (k). 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Function which returns the derivative of Q.\n \n Output:\n ----------------------------\n m_pred, P_pred, dm_pred, dP_pred: metrices, 3D objects\n Results of the prediction steps. \n \n "; -static PyMethodDef __pyx_mdef_3GPy_6models_18state_space_cython_1_kalman_prediction_step_SVD_Cython = {"_kalman_prediction_step_SVD_Cython", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_1_kalman_prediction_step_SVD_Cython, METH_VARARGS|METH_KEYWORDS, __pyx_doc_3GPy_6models_18state_space_cython__kalman_prediction_step_SVD_Cython}; +static PyMethodDef __pyx_mdef_3GPy_6models_18state_space_cython_1_kalman_prediction_step_SVD_Cython = {"_kalman_prediction_step_SVD_Cython", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_3GPy_6models_18state_space_cython_1_kalman_prediction_step_SVD_Cython, METH_VARARGS|METH_KEYWORDS, __pyx_doc_3GPy_6models_18state_space_cython__kalman_prediction_step_SVD_Cython}; static PyObject *__pyx_pw_3GPy_6models_18state_space_cython_1_kalman_prediction_step_SVD_Cython(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) { long __pyx_v_k; PyArrayObject *__pyx_v_p_m = 0; @@ -12969,9 +17438,6 @@ static PyObject *__pyx_pw_3GPy_6models_18state_space_cython_1_kalman_prediction_ int __pyx_v_calc_grad_log_likelihood; PyArrayObject *__pyx_v_p_dm = 0; PyArrayObject *__pyx_v_p_dP = 0; - int __pyx_lineno = 0; - const char *__pyx_filename = NULL; - int __pyx_clineno = 0; PyObject *__pyx_r = 0; __Pyx_RefNannyDeclarations __Pyx_RefNannySetupContext("_kalman_prediction_step_SVD_Cython (wrapper)", 0); @@ -12979,7 +17445,7 @@ static PyObject *__pyx_pw_3GPy_6models_18state_space_cython_1_kalman_prediction_ static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_k,&__pyx_n_s_p_m,&__pyx_n_s_p_P,&__pyx_n_s_p_dynamic_callables,&__pyx_n_s_calc_grad_log_likelihood,&__pyx_n_s_p_dm,&__pyx_n_s_p_dP,0}; PyObject* values[7] = {0,0,0,0,0,0,0}; - /* "GPy/models/state_space_cython.pyx":513 + /* "GPy/models/state_space_cython.pyx":550 * Dynamic_Callables_Cython p_dynamic_callables, * bint calc_grad_log_likelihood=False, * np.ndarray[DTYPE_t, ndim=3] p_dm = None, # <<<<<<<<<<<<<< @@ -12988,7 +17454,7 @@ static PyObject *__pyx_pw_3GPy_6models_18state_space_cython_1_kalman_prediction_ */ values[5] = (PyObject *)((PyArrayObject *)Py_None); 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__pyx_pybuffernd_S_old.rcbuffer->pybuffer.buf = NULL; - {__pyx_filename = __pyx_f[0]; __pyx_lineno = 576; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __PYX_ERR(0, 613, __pyx_L1_error) } else {__pyx_pybuffernd_S_old.diminfo[0].strides = __pyx_pybuffernd_S_old.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_S_old.diminfo[0].shape = __pyx_pybuffernd_S_old.rcbuffer->pybuffer.shape[0]; } } __pyx_v_S_old = ((PyArrayObject *)__pyx_t_1); __pyx_t_1 = 0; - /* "GPy/models/state_space_cython.pyx":577 + /* "GPy/models/state_space_cython.pyx":614 * cdef np.ndarray[DTYPE_t, ndim=2] Prev_cov = p_P[0] * cdef np.ndarray[DTYPE_t, ndim=1] S_old = p_P[1] * cdef np.ndarray[DTYPE_t, ndim=2] V_old = p_P[2] # <<<<<<<<<<<<<< @@ -13393,38 +17872,38 @@ static PyObject *__pyx_pf_3GPy_6models_18state_space_cython__kalman_prediction_s */ if (unlikely(__pyx_v_p_P == Py_None)) { PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable"); - {__pyx_filename = __pyx_f[0]; __pyx_lineno = 577; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __PYX_ERR(0, 614, __pyx_L1_error) } - if (!(likely(((PyTuple_GET_ITEM(__pyx_v_p_P, 2)) == Py_None) || likely(__Pyx_TypeTest(PyTuple_GET_ITEM(__pyx_v_p_P, 2), __pyx_ptype_5numpy_ndarray))))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 577; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if (!(likely(((PyTuple_GET_ITEM(__pyx_v_p_P, 2)) == Py_None) || likely(__Pyx_TypeTest(PyTuple_GET_ITEM(__pyx_v_p_P, 2), __pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0, 614, __pyx_L1_error) __pyx_t_1 = PyTuple_GET_ITEM(__pyx_v_p_P, 2); __Pyx_INCREF(__pyx_t_1); { __Pyx_BufFmt_StackElem __pyx_stack[1]; if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_V_old.rcbuffer->pybuffer, (PyObject*)((PyArrayObject *)__pyx_t_1), &__Pyx_TypeInfo_nn___pyx_t_3GPy_6models_18state_space_cython_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) { __pyx_v_V_old = ((PyArrayObject *)Py_None); __Pyx_INCREF(Py_None); __pyx_pybuffernd_V_old.rcbuffer->pybuffer.buf = NULL; - {__pyx_filename = __pyx_f[0]; __pyx_lineno = 577; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __PYX_ERR(0, 614, __pyx_L1_error) } else {__pyx_pybuffernd_V_old.diminfo[0].strides = __pyx_pybuffernd_V_old.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_V_old.diminfo[0].shape = __pyx_pybuffernd_V_old.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_V_old.diminfo[1].strides = __pyx_pybuffernd_V_old.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_V_old.diminfo[1].shape = __pyx_pybuffernd_V_old.rcbuffer->pybuffer.shape[1]; } } __pyx_v_V_old = ((PyArrayObject *)__pyx_t_1); __pyx_t_1 = 0; - /* "GPy/models/state_space_cython.pyx":581 + /* "GPy/models/state_space_cython.pyx":618 * * # index correspond to values from previous iteration. * cdef np.ndarray[DTYPE_t, ndim=2] A = p_dynamic_callables.Ak(k,p_m,Prev_cov) # state transition matrix (or Jacobian) # <<<<<<<<<<<<<< * cdef np.ndarray[DTYPE_t, ndim=2] Q = p_dynamic_callables.Qk(k) # state noise matrx. This is necessary for the square root calculation (next step) * cdef np.ndarray[DTYPE_t, ndim=2] Q_sr = p_dynamic_callables.Q_srk(k) */ - __pyx_t_1 = ((struct __pyx_vtabstruct_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *)__pyx_v_p_dynamic_callables->__pyx_vtab)->Ak(__pyx_v_p_dynamic_callables, __pyx_v_k, ((PyArrayObject *)__pyx_v_p_m), ((PyArrayObject *)__pyx_v_Prev_cov), 0); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 581; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_1 = ((struct __pyx_vtabstruct_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *)__pyx_v_p_dynamic_callables->__pyx_vtab)->Ak(__pyx_v_p_dynamic_callables, __pyx_v_k, ((PyArrayObject *)__pyx_v_p_m), ((PyArrayObject *)__pyx_v_Prev_cov), 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 618, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); - if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_ptype_5numpy_ndarray))))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 581; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0, 618, __pyx_L1_error) __pyx_t_2 = ((PyArrayObject *)__pyx_t_1); { __Pyx_BufFmt_StackElem __pyx_stack[1]; if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_A.rcbuffer->pybuffer, (PyObject*)__pyx_t_2, &__Pyx_TypeInfo_nn___pyx_t_3GPy_6models_18state_space_cython_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) { __pyx_v_A = ((PyArrayObject *)Py_None); __Pyx_INCREF(Py_None); __pyx_pybuffernd_A.rcbuffer->pybuffer.buf = NULL; - {__pyx_filename = __pyx_f[0]; __pyx_lineno = 581; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __PYX_ERR(0, 618, __pyx_L1_error) } else {__pyx_pybuffernd_A.diminfo[0].strides = __pyx_pybuffernd_A.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_A.diminfo[0].shape = __pyx_pybuffernd_A.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_A.diminfo[1].strides = __pyx_pybuffernd_A.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_A.diminfo[1].shape = __pyx_pybuffernd_A.rcbuffer->pybuffer.shape[1]; } } @@ -13432,22 +17911,22 @@ static PyObject *__pyx_pf_3GPy_6models_18state_space_cython__kalman_prediction_s __pyx_v_A = ((PyArrayObject *)__pyx_t_1); __pyx_t_1 = 0; - /* "GPy/models/state_space_cython.pyx":582 + /* "GPy/models/state_space_cython.pyx":619 * # index correspond to values from previous iteration. * cdef np.ndarray[DTYPE_t, ndim=2] A = p_dynamic_callables.Ak(k,p_m,Prev_cov) # state transition matrix (or Jacobian) * cdef np.ndarray[DTYPE_t, ndim=2] Q = p_dynamic_callables.Qk(k) # state noise matrx. This is necessary for the square root calculation (next step) # <<<<<<<<<<<<<< * cdef np.ndarray[DTYPE_t, ndim=2] Q_sr = p_dynamic_callables.Q_srk(k) * # Prediction step -> */ - __pyx_t_1 = ((struct __pyx_vtabstruct_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *)__pyx_v_p_dynamic_callables->__pyx_vtab)->Qk(__pyx_v_p_dynamic_callables, __pyx_v_k, 0); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 582; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_1 = ((struct __pyx_vtabstruct_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *)__pyx_v_p_dynamic_callables->__pyx_vtab)->Qk(__pyx_v_p_dynamic_callables, __pyx_v_k, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 619, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); - if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_ptype_5numpy_ndarray))))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 582; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0, 619, __pyx_L1_error) __pyx_t_3 = ((PyArrayObject *)__pyx_t_1); { __Pyx_BufFmt_StackElem __pyx_stack[1]; if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_Q.rcbuffer->pybuffer, (PyObject*)__pyx_t_3, &__Pyx_TypeInfo_nn___pyx_t_3GPy_6models_18state_space_cython_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) { __pyx_v_Q = ((PyArrayObject *)Py_None); __Pyx_INCREF(Py_None); __pyx_pybuffernd_Q.rcbuffer->pybuffer.buf = NULL; - {__pyx_filename = __pyx_f[0]; __pyx_lineno = 582; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __PYX_ERR(0, 619, __pyx_L1_error) } else {__pyx_pybuffernd_Q.diminfo[0].strides = __pyx_pybuffernd_Q.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_Q.diminfo[0].shape = __pyx_pybuffernd_Q.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_Q.diminfo[1].strides = __pyx_pybuffernd_Q.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_Q.diminfo[1].shape = __pyx_pybuffernd_Q.rcbuffer->pybuffer.shape[1]; } } @@ -13455,22 +17934,22 @@ static PyObject *__pyx_pf_3GPy_6models_18state_space_cython__kalman_prediction_s __pyx_v_Q = ((PyArrayObject *)__pyx_t_1); __pyx_t_1 = 0; - /* "GPy/models/state_space_cython.pyx":583 + /* "GPy/models/state_space_cython.pyx":620 * cdef np.ndarray[DTYPE_t, ndim=2] A = p_dynamic_callables.Ak(k,p_m,Prev_cov) # state transition matrix (or Jacobian) * cdef np.ndarray[DTYPE_t, ndim=2] Q = p_dynamic_callables.Qk(k) # state noise matrx. This is necessary for the square root calculation (next step) * cdef np.ndarray[DTYPE_t, ndim=2] Q_sr = p_dynamic_callables.Q_srk(k) # <<<<<<<<<<<<<< * # Prediction step -> * cdef np.ndarray[DTYPE_t, ndim=2] m_pred = p_dynamic_callables.f_a(k, p_m, A) # predicted mean */ - __pyx_t_1 = ((struct __pyx_vtabstruct_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *)__pyx_v_p_dynamic_callables->__pyx_vtab)->Q_srk(__pyx_v_p_dynamic_callables, __pyx_v_k, 0); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 583; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_1 = ((struct __pyx_vtabstruct_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *)__pyx_v_p_dynamic_callables->__pyx_vtab)->Q_srk(__pyx_v_p_dynamic_callables, __pyx_v_k, 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 620, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); - if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_ptype_5numpy_ndarray))))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 583; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0, 620, __pyx_L1_error) __pyx_t_4 = ((PyArrayObject *)__pyx_t_1); { __Pyx_BufFmt_StackElem __pyx_stack[1]; if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_Q_sr.rcbuffer->pybuffer, (PyObject*)__pyx_t_4, &__Pyx_TypeInfo_nn___pyx_t_3GPy_6models_18state_space_cython_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) { __pyx_v_Q_sr = ((PyArrayObject *)Py_None); __Pyx_INCREF(Py_None); __pyx_pybuffernd_Q_sr.rcbuffer->pybuffer.buf = NULL; - {__pyx_filename = __pyx_f[0]; __pyx_lineno = 583; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __PYX_ERR(0, 620, __pyx_L1_error) } else {__pyx_pybuffernd_Q_sr.diminfo[0].strides = __pyx_pybuffernd_Q_sr.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_Q_sr.diminfo[0].shape = __pyx_pybuffernd_Q_sr.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_Q_sr.diminfo[1].strides = __pyx_pybuffernd_Q_sr.rcbuffer->pybuffer.strides[1]; 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if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 622, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); - if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_ptype_5numpy_ndarray))))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 585; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0, 622, __pyx_L1_error) __pyx_t_5 = ((PyArrayObject *)__pyx_t_1); { __Pyx_BufFmt_StackElem __pyx_stack[1]; if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_m_pred.rcbuffer->pybuffer, (PyObject*)__pyx_t_5, &__Pyx_TypeInfo_nn___pyx_t_3GPy_6models_18state_space_cython_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) { __pyx_v_m_pred = ((PyArrayObject *)Py_None); __Pyx_INCREF(Py_None); __pyx_pybuffernd_m_pred.rcbuffer->pybuffer.buf = NULL; - {__pyx_filename = __pyx_f[0]; __pyx_lineno = 585; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __PYX_ERR(0, 622, __pyx_L1_error) } else {__pyx_pybuffernd_m_pred.diminfo[0].strides = __pyx_pybuffernd_m_pred.rcbuffer->pybuffer.strides[0]; 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Function which returns the derivative of R.\n \n Output:\n ----------------------------\n m_upd, P_upd, dm_upd, dP_upd: metrices, 3D objects\n Results of the prediction steps.\n \n log_likelihood_update: double or 1D array\n Update to the log_likelihood from this step \n \n d_log_likelihood_update: (grad_params_no, time_series_no) matrix\n Update to the gradient of log_likelihood, \"multiple time series mode\"\n adds extra columns to the gradient.\n \n "; -static PyMethodDef __pyx_mdef_3GPy_6models_18state_space_cython_3_kalman_update_step_SVD_Cython = {"_kalman_update_step_SVD_Cython", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_3_kalman_update_step_SVD_Cython, METH_VARARGS|METH_KEYWORDS, __pyx_doc_3GPy_6models_18state_space_cython_2_kalman_update_step_SVD_Cython}; +static PyMethodDef __pyx_mdef_3GPy_6models_18state_space_cython_3_kalman_update_step_SVD_Cython = {"_kalman_update_step_SVD_Cython", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_3GPy_6models_18state_space_cython_3_kalman_update_step_SVD_Cython, METH_VARARGS|METH_KEYWORDS, __pyx_doc_3GPy_6models_18state_space_cython_2_kalman_update_step_SVD_Cython}; static PyObject *__pyx_pw_3GPy_6models_18state_space_cython_3_kalman_update_step_SVD_Cython(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) { long __pyx_v_k; PyArrayObject *__pyx_v_p_m = 0; @@ -14832,9 +19470,6 @@ static PyObject *__pyx_pw_3GPy_6models_18state_space_cython_3_kalman_update_step int __pyx_v_calc_grad_log_likelihood; PyArrayObject *__pyx_v_p_dm = 0; PyArrayObject *__pyx_v_p_dP = 0; - int __pyx_lineno = 0; - const char *__pyx_filename = NULL; - int __pyx_clineno = 0; PyObject *__pyx_r = 0; __Pyx_RefNannyDeclarations __Pyx_RefNannySetupContext("_kalman_update_step_SVD_Cython (wrapper)", 0); @@ -14842,7 +19477,7 @@ static PyObject *__pyx_pw_3GPy_6models_18state_space_cython_3_kalman_update_step static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_k,&__pyx_n_s_p_m,&__pyx_n_s_p_P,&__pyx_n_s_p_measurement_callables,&__pyx_n_s_measurement,&__pyx_n_s_calc_log_likelihood,&__pyx_n_s_calc_grad_log_likelihood,&__pyx_n_s_p_dm,&__pyx_n_s_p_dP,0}; PyObject* values[9] = {0,0,0,0,0,0,0,0,0}; - /* "GPy/models/state_space_cython.pyx":654 + /* "GPy/models/state_space_cython.pyx":691 * bint calc_log_likelihood= False, * bint calc_grad_log_likelihood=False, * np.ndarray[DTYPE_t, ndim=3] p_dm = None, # <<<<<<<<<<<<<< @@ -14851,7 +19486,7 @@ static PyObject *__pyx_pw_3GPy_6models_18state_space_cython_3_kalman_update_step */ values[7] = (PyObject *)((PyArrayObject *)Py_None); - /* "GPy/models/state_space_cython.pyx":655 + /* "GPy/models/state_space_cython.pyx":692 * bint calc_grad_log_likelihood=False, * np.ndarray[DTYPE_t, ndim=3] p_dm = None, * np.ndarray[DTYPE_t, ndim=3] p_dP = None): # <<<<<<<<<<<<<< @@ -14864,72 +19499,93 @@ static PyObject *__pyx_pw_3GPy_6models_18state_space_cython_3_kalman_update_step const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args); switch (pos_args) { case 9: values[8] = PyTuple_GET_ITEM(__pyx_args, 8); + CYTHON_FALLTHROUGH; case 8: values[7] = PyTuple_GET_ITEM(__pyx_args, 7); + CYTHON_FALLTHROUGH; case 7: values[6] = PyTuple_GET_ITEM(__pyx_args, 6); + CYTHON_FALLTHROUGH; case 6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5); + CYTHON_FALLTHROUGH; case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4); + CYTHON_FALLTHROUGH; case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3); + CYTHON_FALLTHROUGH; case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2); + CYTHON_FALLTHROUGH; case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); + CYTHON_FALLTHROUGH; case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); + CYTHON_FALLTHROUGH; case 0: break; default: goto __pyx_L5_argtuple_error; } kw_args = PyDict_Size(__pyx_kwds); switch (pos_args) { case 0: - if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_k)) != 0)) kw_args--; + if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_k)) != 0)) kw_args--; else goto __pyx_L5_argtuple_error; + CYTHON_FALLTHROUGH; case 1: - if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_p_m)) != 0)) kw_args--; + if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_p_m)) != 0)) kw_args--; 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if (value) { values[5] = value; kw_args--; } } + CYTHON_FALLTHROUGH; case 6: if (kw_args > 0) { - PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_calc_grad_log_likelihood); + PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_calc_grad_log_likelihood); if (value) { values[6] = value; kw_args--; } } + CYTHON_FALLTHROUGH; case 7: if (kw_args > 0) { - PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_p_dm); + PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_p_dm); if (value) { values[7] = value; kw_args--; } } + CYTHON_FALLTHROUGH; case 8: if (kw_args > 0) { - PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_p_dP); + PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_p_dP); if (value) { values[8] = value; kw_args--; } } } if (unlikely(kw_args > 0)) { - if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "_kalman_update_step_SVD_Cython") < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 649; __pyx_clineno = __LINE__; goto __pyx_L3_error;} + if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "_kalman_update_step_SVD_Cython") < 0)) __PYX_ERR(0, 686, __pyx_L3_error) } } else { switch (PyTuple_GET_SIZE(__pyx_args)) { case 9: values[8] = PyTuple_GET_ITEM(__pyx_args, 8); + CYTHON_FALLTHROUGH; case 8: values[7] = PyTuple_GET_ITEM(__pyx_args, 7); + CYTHON_FALLTHROUGH; case 7: values[6] = PyTuple_GET_ITEM(__pyx_args, 6); + CYTHON_FALLTHROUGH; case 6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5); + CYTHON_FALLTHROUGH; case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4); values[3] = PyTuple_GET_ITEM(__pyx_args, 3); values[2] = PyTuple_GET_ITEM(__pyx_args, 2); @@ -14939,16 +19595,16 @@ static PyObject *__pyx_pw_3GPy_6models_18state_space_cython_3_kalman_update_step default: goto __pyx_L5_argtuple_error; } } - __pyx_v_k = __Pyx_PyInt_As_long(values[0]); if (unlikely((__pyx_v_k == (long)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 649; __pyx_clineno = __LINE__; goto __pyx_L3_error;} + __pyx_v_k = __Pyx_PyInt_As_long(values[0]); if (unlikely((__pyx_v_k == (long)-1) && PyErr_Occurred())) __PYX_ERR(0, 686, __pyx_L3_error) __pyx_v_p_m = ((PyArrayObject *)values[1]); __pyx_v_p_P = ((PyObject*)values[2]); __pyx_v_p_measurement_callables = ((struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *)values[3]); __pyx_v_measurement = ((PyArrayObject *)values[4]); if (values[5]) { - __pyx_v_calc_log_likelihood = __Pyx_PyObject_IsTrue(values[5]); if (unlikely((__pyx_v_calc_log_likelihood == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 652; __pyx_clineno = __LINE__; goto __pyx_L3_error;} + __pyx_v_calc_log_likelihood = __Pyx_PyObject_IsTrue(values[5]); if (unlikely((__pyx_v_calc_log_likelihood == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 689, __pyx_L3_error) } else { - /* "GPy/models/state_space_cython.pyx":652 + /* "GPy/models/state_space_cython.pyx":689 * Measurement_Callables_Cython p_measurement_callables, * np.ndarray[DTYPE_t, ndim=2] measurement, * bint calc_log_likelihood= False, # <<<<<<<<<<<<<< @@ -14958,10 +19614,10 @@ static PyObject *__pyx_pw_3GPy_6models_18state_space_cython_3_kalman_update_step __pyx_v_calc_log_likelihood = ((int)0); } if (values[6]) { - __pyx_v_calc_grad_log_likelihood = __Pyx_PyObject_IsTrue(values[6]); if (unlikely((__pyx_v_calc_grad_log_likelihood == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 653; __pyx_clineno = __LINE__; goto __pyx_L3_error;} + __pyx_v_calc_grad_log_likelihood = __Pyx_PyObject_IsTrue(values[6]); if (unlikely((__pyx_v_calc_grad_log_likelihood == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 690, __pyx_L3_error) } else { - /* "GPy/models/state_space_cython.pyx":653 + /* "GPy/models/state_space_cython.pyx":690 * np.ndarray[DTYPE_t, ndim=2] measurement, * bint calc_log_likelihood= False, * bint calc_grad_log_likelihood=False, # <<<<<<<<<<<<<< @@ -14975,21 +19631,21 @@ static PyObject *__pyx_pw_3GPy_6models_18state_space_cython_3_kalman_update_step } goto __pyx_L4_argument_unpacking_done; __pyx_L5_argtuple_error:; - __Pyx_RaiseArgtupleInvalid("_kalman_update_step_SVD_Cython", 0, 5, 9, PyTuple_GET_SIZE(__pyx_args)); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 649; 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- /* "GPy/models/state_space_cython.pyx":649 + /* "GPy/models/state_space_cython.pyx":686 * * @cython.boundscheck(False) * def _kalman_update_step_SVD_Cython(long k, np.ndarray[DTYPE_t, ndim=2] p_m, tuple p_P, # <<<<<<<<<<<<<< @@ -15144,7 +19800,7 @@ static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_2_kalman_update_step PyObject *__pyx_t_10 = NULL; PyObject *__pyx_t_11 = NULL; PyObject *__pyx_t_12 = NULL; - Py_ssize_t __pyx_t_13; + int __pyx_t_13; PyObject *__pyx_t_14 = NULL; PyArrayObject *__pyx_t_15 = NULL; PyArrayObject *__pyx_t_16 = NULL; @@ -15156,22 +19812,19 @@ static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_2_kalman_update_step PyArrayObject *__pyx_t_22 = NULL; int __pyx_t_23; PyArrayObject *__pyx_t_24 = NULL; - int __pyx_t_25; + PyObject *__pyx_t_25 = NULL; PyObject *__pyx_t_26 = NULL; PyObject *__pyx_t_27 = NULL; - PyObject *__pyx_t_28 = NULL; + PyArrayObject *__pyx_t_28 = NULL; PyArrayObject *__pyx_t_29 = NULL; PyArrayObject *__pyx_t_30 = NULL; PyArrayObject *__pyx_t_31 = NULL; 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- {__pyx_filename = __pyx_f[0]; __pyx_lineno = 734; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __PYX_ERR(0, 771, __pyx_L1_error) } - if (!(likely(((PyTuple_GET_ITEM(__pyx_v_p_P, 1)) == Py_None) || likely(__Pyx_TypeTest(PyTuple_GET_ITEM(__pyx_v_p_P, 1), __pyx_ptype_5numpy_ndarray))))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 734; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if (!(likely(((PyTuple_GET_ITEM(__pyx_v_p_P, 1)) == Py_None) || likely(__Pyx_TypeTest(PyTuple_GET_ITEM(__pyx_v_p_P, 1), __pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0, 771, __pyx_L1_error) __pyx_t_1 = PyTuple_GET_ITEM(__pyx_v_p_P, 1); __Pyx_INCREF(__pyx_t_1); { __Pyx_BufFmt_StackElem __pyx_stack[1]; if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_S_pred.rcbuffer->pybuffer, (PyObject*)((PyArrayObject *)__pyx_t_1), &__Pyx_TypeInfo_nn___pyx_t_3GPy_6models_18state_space_cython_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 1, 0, __pyx_stack) == -1)) { __pyx_v_S_pred = ((PyArrayObject *)Py_None); __Pyx_INCREF(Py_None); __pyx_pybuffernd_S_pred.rcbuffer->pybuffer.buf = NULL; - {__pyx_filename = __pyx_f[0]; __pyx_lineno = 734; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __PYX_ERR(0, 771, __pyx_L1_error) } else {__pyx_pybuffernd_S_pred.diminfo[0].strides = __pyx_pybuffernd_S_pred.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_S_pred.diminfo[0].shape = __pyx_pybuffernd_S_pred.rcbuffer->pybuffer.shape[0]; } } __pyx_v_S_pred = ((PyArrayObject *)__pyx_t_1); __pyx_t_1 = 0; - /* "GPy/models/state_space_cython.pyx":735 + /* "GPy/models/state_space_cython.pyx":772 * cdef np.ndarray[DTYPE_t, ndim=2] P_pred = p_P[0] * cdef np.ndarray[DTYPE_t, ndim=1] S_pred = p_P[1] * cdef np.ndarray[DTYPE_t, ndim=2] V_pred = p_P[2] # <<<<<<<<<<<<<< @@ -15431,38 +20084,38 @@ static PyObject *__pyx_pf_3GPy_6models_18state_space_cython_2_kalman_update_step */ if (unlikely(__pyx_v_p_P == Py_None)) { PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable"); - {__pyx_filename = __pyx_f[0]; __pyx_lineno = 735; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __PYX_ERR(0, 772, __pyx_L1_error) } - if (!(likely(((PyTuple_GET_ITEM(__pyx_v_p_P, 2)) == Py_None) || likely(__Pyx_TypeTest(PyTuple_GET_ITEM(__pyx_v_p_P, 2), __pyx_ptype_5numpy_ndarray))))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 735; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if (!(likely(((PyTuple_GET_ITEM(__pyx_v_p_P, 2)) == Py_None) || likely(__Pyx_TypeTest(PyTuple_GET_ITEM(__pyx_v_p_P, 2), __pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0, 772, __pyx_L1_error) __pyx_t_1 = PyTuple_GET_ITEM(__pyx_v_p_P, 2); __Pyx_INCREF(__pyx_t_1); { __Pyx_BufFmt_StackElem __pyx_stack[1]; if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_V_pred.rcbuffer->pybuffer, (PyObject*)((PyArrayObject *)__pyx_t_1), &__Pyx_TypeInfo_nn___pyx_t_3GPy_6models_18state_space_cython_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) { __pyx_v_V_pred = ((PyArrayObject *)Py_None); __Pyx_INCREF(Py_None); __pyx_pybuffernd_V_pred.rcbuffer->pybuffer.buf = NULL; - {__pyx_filename = __pyx_f[0]; 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if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 737; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_1 = ((struct __pyx_vtabstruct_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *)__pyx_v_p_measurement_callables->__pyx_vtab)->Hk(__pyx_v_p_measurement_callables, __pyx_v_k, ((PyArrayObject *)__pyx_v_m_pred), ((PyArrayObject *)__pyx_v_P_pred), 0); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 774, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); - if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_ptype_5numpy_ndarray))))) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 737; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0, 774, __pyx_L1_error) __pyx_t_2 = ((PyArrayObject *)__pyx_t_1); { __Pyx_BufFmt_StackElem __pyx_stack[1]; if (unlikely(__Pyx_GetBufferAndValidate(&__pyx_pybuffernd_H.rcbuffer->pybuffer, (PyObject*)__pyx_t_2, &__Pyx_TypeInfo_nn___pyx_t_3GPy_6models_18state_space_cython_DTYPE_t, PyBUF_FORMAT| PyBUF_STRIDES, 2, 0, __pyx_stack) == -1)) { __pyx_v_H = ((PyArrayObject *)Py_None); 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PyArrayObject *__pyx_v_dm_init = 0; PyArrayObject *__pyx_v_dP_init = 0; - int __pyx_lineno = 0; - const char *__pyx_filename = NULL; - int __pyx_clineno = 0; PyObject *__pyx_r = 0; __Pyx_RefNannyDeclarations __Pyx_RefNannySetupContext("_cont_discr_kalman_filter_raw_Cython (wrapper)", 0); @@ -18623,7 +23613,7 @@ static PyObject *__pyx_pw_3GPy_6models_18state_space_cython_5_cont_discr_kalman_ static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_state_dim,&__pyx_n_s_p_dynamic_callables,&__pyx_n_s_p_measurement_callables,&__pyx_n_s_X,&__pyx_n_s_Y,&__pyx_n_s_m_init,&__pyx_n_s_P_init,&__pyx_n_s_p_kalman_filter_type,&__pyx_n_s_calc_log_likelihood,&__pyx_n_s_calc_grad_log_likelihood,&__pyx_n_s_grad_params_no,&__pyx_n_s_dm_init,&__pyx_n_s_dP_init,0}; PyObject* values[13] = {0,0,0,0,0,0,0,0,0,0,0,0,0}; - /* "GPy/models/state_space_cython.pyx":877 + /* "GPy/models/state_space_cython.pyx":914 * def _cont_discr_kalman_filter_raw_Cython(int state_dim, Dynamic_Callables_Cython p_dynamic_callables, * Measurement_Callables_Cython p_measurement_callables, X, Y, * np.ndarray[DTYPE_t, ndim=2] m_init=None, np.ndarray[DTYPE_t, ndim=2] P_init=None, # <<<<<<<<<<<<<< @@ -18634,7 +23624,7 @@ static PyObject *__pyx_pw_3GPy_6models_18state_space_cython_5_cont_discr_kalman_ values[6] = (PyObject *)((PyArrayObject *)Py_None); values[7] = ((PyObject *)__pyx_n_s_regular); - /* "GPy/models/state_space_cython.pyx":882 + /* "GPy/models/state_space_cython.pyx":919 * bint calc_grad_log_likelihood=False, * int grad_params_no=0, * np.ndarray[DTYPE_t, ndim=3] dm_init=None, # <<<<<<<<<<<<<< @@ -18643,7 +23633,7 @@ static PyObject *__pyx_pw_3GPy_6models_18state_space_cython_5_cont_discr_kalman_ */ values[11] = (PyObject *)((PyArrayObject *)Py_None); - /* "GPy/models/state_space_cython.pyx":883 + /* "GPy/models/state_space_cython.pyx":920 * int grad_params_no=0, * np.ndarray[DTYPE_t, ndim=3] dm_init=None, * np.ndarray[DTYPE_t, ndim=3] dP_init=None): # <<<<<<<<<<<<<< @@ -18656,100 +23646,133 @@ static PyObject *__pyx_pw_3GPy_6models_18state_space_cython_5_cont_discr_kalman_ const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args); switch (pos_args) { case 13: values[12] = PyTuple_GET_ITEM(__pyx_args, 12); + CYTHON_FALLTHROUGH; case 12: values[11] = PyTuple_GET_ITEM(__pyx_args, 11); + CYTHON_FALLTHROUGH; case 11: values[10] = PyTuple_GET_ITEM(__pyx_args, 10); 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goto __pyx_L3_error;} + __Pyx_RaiseArgtupleInvalid("_cont_discr_kalman_filter_raw_Cython", 0, 5, 13, 2); __PYX_ERR(0, 912, __pyx_L3_error) } + CYTHON_FALLTHROUGH; case 3: - if (likely((values[3] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_X)) != 0)) kw_args--; + if (likely((values[3] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_X)) != 0)) kw_args--; else { - __Pyx_RaiseArgtupleInvalid("_cont_discr_kalman_filter_raw_Cython", 0, 5, 13, 3); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 875; __pyx_clineno = __LINE__; goto __pyx_L3_error;} + __Pyx_RaiseArgtupleInvalid("_cont_discr_kalman_filter_raw_Cython", 0, 5, 13, 3); __PYX_ERR(0, 912, __pyx_L3_error) } + CYTHON_FALLTHROUGH; case 4: - if (likely((values[4] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_Y)) != 0)) kw_args--; + if (likely((values[4] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_Y)) != 0)) kw_args--; else { - __Pyx_RaiseArgtupleInvalid("_cont_discr_kalman_filter_raw_Cython", 0, 5, 13, 4); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 875; __pyx_clineno = __LINE__; goto __pyx_L3_error;} + __Pyx_RaiseArgtupleInvalid("_cont_discr_kalman_filter_raw_Cython", 0, 5, 13, 4); __PYX_ERR(0, 912, __pyx_L3_error) } + CYTHON_FALLTHROUGH; case 5: if (kw_args > 0) { - PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_m_init); + PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_m_init); if (value) { values[5] = value; kw_args--; } } + CYTHON_FALLTHROUGH; case 6: if (kw_args > 0) { - PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_P_init); + PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_P_init); if (value) { values[6] = value; kw_args--; } } + CYTHON_FALLTHROUGH; case 7: if (kw_args > 0) { - PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_p_kalman_filter_type); + PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_p_kalman_filter_type); if (value) { values[7] = value; kw_args--; } } + CYTHON_FALLTHROUGH; case 8: if (kw_args > 0) { - PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_calc_log_likelihood); 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+ PyObject* value = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_dP_init); if (value) { values[12] = value; kw_args--; } } } if (unlikely(kw_args > 0)) { - if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "_cont_discr_kalman_filter_raw_Cython") < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 875; __pyx_clineno = __LINE__; goto __pyx_L3_error;} + if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "_cont_discr_kalman_filter_raw_Cython") < 0)) __PYX_ERR(0, 912, __pyx_L3_error) } } else { switch (PyTuple_GET_SIZE(__pyx_args)) { case 13: values[12] = PyTuple_GET_ITEM(__pyx_args, 12); + CYTHON_FALLTHROUGH; case 12: values[11] = PyTuple_GET_ITEM(__pyx_args, 11); + CYTHON_FALLTHROUGH; case 11: values[10] = PyTuple_GET_ITEM(__pyx_args, 10); + CYTHON_FALLTHROUGH; case 10: values[9] = PyTuple_GET_ITEM(__pyx_args, 9); + CYTHON_FALLTHROUGH; case 9: values[8] = PyTuple_GET_ITEM(__pyx_args, 8); + CYTHON_FALLTHROUGH; case 8: values[7] = PyTuple_GET_ITEM(__pyx_args, 7); + CYTHON_FALLTHROUGH; case 7: values[6] = PyTuple_GET_ITEM(__pyx_args, 6); + CYTHON_FALLTHROUGH; case 6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5); + CYTHON_FALLTHROUGH; case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4); values[3] = PyTuple_GET_ITEM(__pyx_args, 3); values[2] = PyTuple_GET_ITEM(__pyx_args, 2); @@ -18759,7 +23782,7 @@ static PyObject *__pyx_pw_3GPy_6models_18state_space_cython_5_cont_discr_kalman_ default: goto __pyx_L5_argtuple_error; } } - __pyx_v_state_dim = __Pyx_PyInt_As_int(values[0]); if (unlikely((__pyx_v_state_dim == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 875; __pyx_clineno = __LINE__; goto __pyx_L3_error;} + __pyx_v_state_dim = __Pyx_PyInt_As_int(values[0]); if (unlikely((__pyx_v_state_dim == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 912, __pyx_L3_error) __pyx_v_p_dynamic_callables = ((struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *)values[1]); 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} if (values[9]) { - __pyx_v_calc_grad_log_likelihood = __Pyx_PyObject_IsTrue(values[9]); if (unlikely((__pyx_v_calc_grad_log_likelihood == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 880; __pyx_clineno = __LINE__; goto __pyx_L3_error;} + __pyx_v_calc_grad_log_likelihood = __Pyx_PyObject_IsTrue(values[9]); if (unlikely((__pyx_v_calc_grad_log_likelihood == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 917, __pyx_L3_error) } else { - /* "GPy/models/state_space_cython.pyx":880 + /* "GPy/models/state_space_cython.pyx":917 * p_kalman_filter_type='regular', * bint calc_log_likelihood=False, * bint calc_grad_log_likelihood=False, # <<<<<<<<<<<<<< @@ -18794,7 +23817,7 @@ static PyObject *__pyx_pw_3GPy_6models_18state_space_cython_5_cont_discr_kalman_ __pyx_v_calc_grad_log_likelihood = ((int)0); } if (values[10]) { - __pyx_v_grad_params_no = __Pyx_PyInt_As_int(values[10]); if (unlikely((__pyx_v_grad_params_no == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; 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__pyx_v_t = __pyx_t_4; - /* "../../../../../../../Work/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":258 - * if not hasfields: + /* "../../../../../anaconda3/envs/bayesopt/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":304 + * if not PyDataType_HASFIELDS(descr): * t = descr.type_num * if ((descr.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<< * (descr.byteorder == c'<' and not little_endian)): @@ -21285,18 +29334,18 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P */ __pyx_t_2 = ((__pyx_v_descr->byteorder == '>') != 0); if (!__pyx_t_2) { - goto __pyx_L20_next_or; + goto __pyx_L15_next_or; } else { } __pyx_t_2 = (__pyx_v_little_endian != 0); if (!__pyx_t_2) { } else { __pyx_t_1 = __pyx_t_2; - goto __pyx_L19_bool_binop_done; + goto __pyx_L14_bool_binop_done; } - __pyx_L20_next_or:; + __pyx_L15_next_or:; - /* "../../../../../../../Work/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":259 + /* "../../../../../anaconda3/envs/bayesopt/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":305 * t = descr.type_num * if ((descr.byteorder == c'>' and little_endian) or * (descr.byteorder == c'<' and not little_endian)): # <<<<<<<<<<<<<< @@ -21307,251 +29356,254 @@ static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, P if (__pyx_t_2) { } else { __pyx_t_1 = __pyx_t_2; 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+ goto __pyx_L1_error; + __pyx_L8_try_end:; + } + + /* "../../../../../anaconda3/envs/bayesopt/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":1046 + * raise ImportError("numpy.core.umath failed to import") + * + * cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<< + * try: + * _import_umath() + */ + + /* function exit code */ + __pyx_r = 0; + goto __pyx_L0; + __pyx_L1_error:; + __Pyx_XDECREF(__pyx_t_5); + __Pyx_XDECREF(__pyx_t_6); + __Pyx_XDECREF(__pyx_t_7); + __Pyx_XDECREF(__pyx_t_8); + __Pyx_AddTraceback("numpy.import_ufunc", __pyx_clineno, __pyx_lineno, __pyx_filename); + __pyx_r = -1; + __pyx_L0:; + __Pyx_RefNannyFinishContext(); + return __pyx_r; +} static struct __pyx_vtabstruct_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython __pyx_vtable_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython; static PyObject *__pyx_tp_new_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { @@ -22866,8 +31381,8 @@ static PyObject *__pyx_tp_new_3GPy_6models_18state_space_cython_Dynamic_Callable } static void __pyx_tp_dealloc_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython(PyObject *o) { - #if PY_VERSION_HEX >= 0x030400a1 - if (unlikely(Py_TYPE(o)->tp_finalize) && (!PyType_IS_GC(Py_TYPE(o)) || !_PyGC_FINALIZED(o))) { + #if CYTHON_USE_TP_FINALIZE + if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && (!PyType_IS_GC(Py_TYPE(o)) || !_PyGC_FINALIZED(o))) { if (PyObject_CallFinalizerFromDealloc(o)) return; 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@@ -22896,8 +31413,9 @@ static PyTypeObject __pyx_type_3GPy_6models_18state_space_cython_Dynamic_Callabl 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ - #else - 0, /*reserved*/ + #endif + #if PY_MAJOR_VERSION >= 3 + 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ @@ -22958,8 +31476,8 @@ static PyObject *__pyx_tp_new_3GPy_6models_18state_space_cython_Measurement_Call } static void __pyx_tp_dealloc_3GPy_6models_18state_space_cython_Measurement_Callables_Cython(PyObject *o) { - #if PY_VERSION_HEX >= 0x030400a1 - if (unlikely(Py_TYPE(o)->tp_finalize) && (!PyType_IS_GC(Py_TYPE(o)) || !_PyGC_FINALIZED(o))) { + #if CYTHON_USE_TP_FINALIZE + if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && (!PyType_IS_GC(Py_TYPE(o)) || !_PyGC_FINALIZED(o))) { if (PyObject_CallFinalizerFromDealloc(o)) return; } #endif @@ -22967,13 +31485,15 @@ static void __pyx_tp_dealloc_3GPy_6models_18state_space_cython_Measurement_Calla } static PyMethodDef __pyx_methods_3GPy_6models_18state_space_cython_Measurement_Callables_Cython[] = { - {"f_h", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_1f_h, METH_VARARGS|METH_KEYWORDS, 0}, - {"Hk", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_3Hk, METH_VARARGS|METH_KEYWORDS, 0}, + {"f_h", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_1f_h, METH_VARARGS|METH_KEYWORDS, 0}, + {"Hk", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_3Hk, METH_VARARGS|METH_KEYWORDS, 0}, {"Rk", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_5Rk, METH_O, 0}, {"R_isrk", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_7R_isrk, METH_O, 0}, {"dHk", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_9dHk, METH_O, 0}, {"dRk", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_11dRk, METH_O, 0}, - {"reset", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_13reset, METH_VARARGS|METH_KEYWORDS, 0}, + {"reset", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_13reset, METH_VARARGS|METH_KEYWORDS, 0}, + {"__reduce_cython__", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_15__reduce_cython__, METH_NOARGS, 0}, + {"__setstate_cython__", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_17__setstate_cython__, METH_O, 0}, {0, 0, 0, 0} }; 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Py_CLEAR(p->dR); Py_CLEAR(p->R_square_root); - #if CYTHON_COMPILING_IN_CPYTHON + #if CYTHON_USE_TYPE_SLOTS if (PyType_IS_GC(Py_TYPE(o)->tp_base)) #endif PyObject_GC_Track(o); @@ -23072,13 +31593,13 @@ static int __pyx_tp_traverse_3GPy_6models_18state_space_cython_R_handling_Cython struct __pyx_obj_3GPy_6models_18state_space_cython_R_handling_Cython *p = (struct __pyx_obj_3GPy_6models_18state_space_cython_R_handling_Cython *)o; e = ((likely(__pyx_ptype_3GPy_6models_18state_space_cython_Measurement_Callables_Cython)) ? ((__pyx_ptype_3GPy_6models_18state_space_cython_Measurement_Callables_Cython->tp_traverse) ? __pyx_ptype_3GPy_6models_18state_space_cython_Measurement_Callables_Cython->tp_traverse(o, v, a) : 0) : __Pyx_call_next_tp_traverse(o, v, a, __pyx_tp_traverse_3GPy_6models_18state_space_cython_R_handling_Cython)); if (e) return e; if (p->R) { - e = (*v)(((PyObject*)p->R), a); if (e) return e; + e = (*v)(((PyObject *)p->R), a); if (e) return e; } if (p->index) { - e = (*v)(((PyObject*)p->index), a); if (e) return e; + e = (*v)(((PyObject *)p->index), a); if (e) return e; } if (p->dR) { - e = (*v)(((PyObject*)p->dR), a); if (e) return e; + e = (*v)(((PyObject *)p->dR), a); if (e) return e; } if (p->R_square_root) { e = (*v)(p->R_square_root, a); if (e) return e; @@ -23109,6 +31630,8 @@ static PyMethodDef __pyx_methods_3GPy_6models_18state_space_cython_R_handling_Cy {"Rk", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_17R_handling_Cython_3Rk, METH_O, 0}, {"dRk", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_17R_handling_Cython_5dRk, METH_O, 0}, {"R_isrk", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_17R_handling_Cython_7R_isrk, METH_O, __pyx_doc_3GPy_6models_18state_space_cython_17R_handling_Cython_6R_isrk}, + {"__reduce_cython__", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_17R_handling_Cython_9__reduce_cython__, METH_NOARGS, 0}, + {"__setstate_cython__", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_17R_handling_Cython_11__setstate_cython__, METH_O, 0}, {0, 0, 0, 0} }; 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e = __pyx_tp_traverse_3GPy_6models_18state_space_cython_R_handling_Cython(o, v, a); if (e) return e; if (p->H) { - e = (*v)(((PyObject*)p->H), a); if (e) return e; + e = (*v)(((PyObject *)p->H), a); if (e) return e; } if (p->dH) { - e = (*v)(((PyObject*)p->dH), a); if (e) return e; + e = (*v)(((PyObject *)p->dH), a); if (e) return e; } return 0; } @@ -23222,9 +31746,11 @@ static int __pyx_tp_clear_3GPy_6models_18state_space_cython_Std_Measurement_Call } static PyMethodDef __pyx_methods_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython[] = { - {"f_h", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_32Std_Measurement_Callables_Cython_3f_h, METH_VARARGS|METH_KEYWORDS, __pyx_doc_3GPy_6models_18state_space_cython_32Std_Measurement_Callables_Cython_2f_h}, - {"Hk", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_32Std_Measurement_Callables_Cython_5Hk, METH_VARARGS|METH_KEYWORDS, __pyx_doc_3GPy_6models_18state_space_cython_32Std_Measurement_Callables_Cython_4Hk}, + {"f_h", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_3GPy_6models_18state_space_cython_32Std_Measurement_Callables_Cython_3f_h, METH_VARARGS|METH_KEYWORDS, __pyx_doc_3GPy_6models_18state_space_cython_32Std_Measurement_Callables_Cython_2f_h}, + {"Hk", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_3GPy_6models_18state_space_cython_32Std_Measurement_Callables_Cython_5Hk, METH_VARARGS|METH_KEYWORDS, __pyx_doc_3GPy_6models_18state_space_cython_32Std_Measurement_Callables_Cython_4Hk}, {"dHk", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_32Std_Measurement_Callables_Cython_7dHk, METH_O, 0}, + {"__reduce_cython__", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_32Std_Measurement_Callables_Cython_9__reduce_cython__, METH_NOARGS, 0}, + {"__setstate_cython__", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_32Std_Measurement_Callables_Cython_11__setstate_cython__, METH_O, 0}, {0, 0, 0, 0} }; @@ -23239,8 +31765,9 @@ static PyTypeObject __pyx_type_3GPy_6models_18state_space_cython_Std_Measurement 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ - #else - 0, /*reserved*/ + #endif + #if PY_MAJOR_VERSION >= 3 + 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ @@ -23301,8 +31828,8 @@ static PyObject *__pyx_tp_new_3GPy_6models_18state_space_cython_Q_handling_Cytho static void __pyx_tp_dealloc_3GPy_6models_18state_space_cython_Q_handling_Cython(PyObject *o) { struct __pyx_obj_3GPy_6models_18state_space_cython_Q_handling_Cython *p = (struct __pyx_obj_3GPy_6models_18state_space_cython_Q_handling_Cython *)o; - #if PY_VERSION_HEX >= 0x030400a1 - if (unlikely(Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) { + #if CYTHON_USE_TP_FINALIZE + if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) { if (PyObject_CallFinalizerFromDealloc(o)) return; } #endif @@ -23311,7 +31838,7 @@ static void __pyx_tp_dealloc_3GPy_6models_18state_space_cython_Q_handling_Cython Py_CLEAR(p->index); Py_CLEAR(p->dQ); Py_CLEAR(p->Q_square_root); - #if CYTHON_COMPILING_IN_CPYTHON + #if CYTHON_USE_TYPE_SLOTS if (PyType_IS_GC(Py_TYPE(o)->tp_base)) #endif PyObject_GC_Track(o); @@ -23323,13 +31850,13 @@ static int __pyx_tp_traverse_3GPy_6models_18state_space_cython_Q_handling_Cython struct __pyx_obj_3GPy_6models_18state_space_cython_Q_handling_Cython *p = (struct __pyx_obj_3GPy_6models_18state_space_cython_Q_handling_Cython *)o; e = ((likely(__pyx_ptype_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython)) ? ((__pyx_ptype_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython->tp_traverse) ? __pyx_ptype_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython->tp_traverse(o, v, a) : 0) : __Pyx_call_next_tp_traverse(o, v, a, __pyx_tp_traverse_3GPy_6models_18state_space_cython_Q_handling_Cython)); if (e) return e; if (p->Q) { - e = (*v)(((PyObject*)p->Q), a); if (e) return e; + e = (*v)(((PyObject *)p->Q), a); if (e) return e; } if (p->index) { - e = (*v)(((PyObject*)p->index), a); if (e) return e; + e = (*v)(((PyObject *)p->index), a); if (e) return e; } if (p->dQ) { - e = (*v)(((PyObject*)p->dQ), a); if (e) return e; + e = (*v)(((PyObject *)p->dQ), a); if (e) return e; } if (p->Q_square_root) { e = (*v)(p->Q_square_root, a); if (e) return e; @@ -23360,6 +31887,8 @@ static PyMethodDef __pyx_methods_3GPy_6models_18state_space_cython_Q_handling_Cy {"Qk", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_17Q_handling_Cython_3Qk, METH_O, __pyx_doc_3GPy_6models_18state_space_cython_17Q_handling_Cython_2Qk}, {"dQk", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_17Q_handling_Cython_5dQk, METH_O, 0}, {"Q_srk", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_17Q_handling_Cython_7Q_srk, METH_O, __pyx_doc_3GPy_6models_18state_space_cython_17Q_handling_Cython_6Q_srk}, + {"__reduce_cython__", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_17Q_handling_Cython_9__reduce_cython__, METH_NOARGS, 0}, + {"__setstate_cython__", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_17Q_handling_Cython_11__setstate_cython__, METH_O, 0}, {0, 0, 0, 0} }; @@ -23374,8 +31903,9 @@ static PyTypeObject __pyx_type_3GPy_6models_18state_space_cython_Q_handling_Cyth 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ - #else - 0, /*reserved*/ + #endif + #if PY_MAJOR_VERSION >= 3 + 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ @@ -23434,8 +31964,8 @@ static PyObject *__pyx_tp_new_3GPy_6models_18state_space_cython_Std_Dynamic_Call static void __pyx_tp_dealloc_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython(PyObject *o) { struct __pyx_obj_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython *p = (struct __pyx_obj_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython *)o; - #if PY_VERSION_HEX >= 0x030400a1 - if (unlikely(Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) { + #if CYTHON_USE_TP_FINALIZE + if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) { if (PyObject_CallFinalizerFromDealloc(o)) return; } #endif @@ -23451,10 +31981,10 @@ static int __pyx_tp_traverse_3GPy_6models_18state_space_cython_Std_Dynamic_Calla struct __pyx_obj_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython *p = (struct __pyx_obj_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython *)o; e = __pyx_tp_traverse_3GPy_6models_18state_space_cython_Q_handling_Cython(o, v, a); if (e) return e; if (p->A) { - e = (*v)(((PyObject*)p->A), a); if (e) return e; + e = (*v)(((PyObject *)p->A), a); if (e) return e; } if (p->dA) { - e = (*v)(((PyObject*)p->dA), a); if (e) return e; + e = (*v)(((PyObject *)p->dA), a); if (e) return e; } return 0; } @@ -23473,10 +32003,12 @@ static int __pyx_tp_clear_3GPy_6models_18state_space_cython_Std_Dynamic_Callable } static PyMethodDef __pyx_methods_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython[] = { - {"f_a", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython_3f_a, METH_VARARGS|METH_KEYWORDS, __pyx_doc_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython_2f_a}, - {"Ak", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython_5Ak, METH_VARARGS|METH_KEYWORDS, __pyx_doc_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython_4Ak}, + {"f_a", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython_3f_a, METH_VARARGS|METH_KEYWORDS, __pyx_doc_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython_2f_a}, + {"Ak", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython_5Ak, METH_VARARGS|METH_KEYWORDS, __pyx_doc_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython_4Ak}, {"dAk", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython_7dAk, METH_O, 0}, - {"reset", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython_9reset, METH_VARARGS|METH_KEYWORDS, __pyx_doc_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython_8reset}, + {"reset", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython_9reset, METH_VARARGS|METH_KEYWORDS, __pyx_doc_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython_8reset}, + {"__reduce_cython__", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython_11__reduce_cython__, METH_NOARGS, 0}, + {"__setstate_cython__", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython_13__setstate_cython__, METH_O, 0}, {0, 0, 0, 0} }; @@ -23491,8 +32023,9 @@ static PyTypeObject __pyx_type_3GPy_6models_18state_space_cython_Std_Dynamic_Cal 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ - #else - 0, /*reserved*/ + #endif + #if PY_MAJOR_VERSION >= 3 + 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ @@ -23555,8 +32088,8 @@ static PyObject *__pyx_tp_new_3GPy_6models_18state_space_cython_AQcompute_batch_ static void __pyx_tp_dealloc_3GPy_6models_18state_space_cython_AQcompute_batch_Cython(PyObject *o) { struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython *p = (struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython *)o; - #if PY_VERSION_HEX >= 0x030400a1 - if (unlikely(Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) { + #if CYTHON_USE_TP_FINALIZE + if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) { if (PyObject_CallFinalizerFromDealloc(o)) return; } #endif @@ -23576,19 +32109,19 @@ static int __pyx_tp_traverse_3GPy_6models_18state_space_cython_AQcompute_batch_C struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython *p = (struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython *)o; e = __pyx_tp_traverse_3GPy_6models_18state_space_cython_Q_handling_Cython(o, v, a); if (e) return e; if (p->As) { - e = (*v)(((PyObject*)p->As), a); if (e) return e; + e = (*v)(((PyObject *)p->As), a); if (e) return e; } if (p->Qs) { - e = (*v)(((PyObject*)p->Qs), a); if (e) return e; + e = (*v)(((PyObject *)p->Qs), a); if (e) return e; } if (p->dAs) { - e = (*v)(((PyObject*)p->dAs), a); if (e) return e; + e = (*v)(((PyObject *)p->dAs), a); if (e) return e; } if (p->dQs) { - e = (*v)(((PyObject*)p->dQs), a); if (e) return e; + e = (*v)(((PyObject *)p->dQs), a); if (e) return e; } if (p->reconstruct_indices) { - e = (*v)(((PyObject*)p->reconstruct_indices), a); if (e) return e; + e = (*v)(((PyObject *)p->reconstruct_indices), a); if (e) return e; } if (p->Q_svd_dict) { e = (*v)(p->Q_svd_dict, a); if (e) return e; @@ -23622,13 +32155,16 @@ static int __pyx_tp_clear_3GPy_6models_18state_space_cython_AQcompute_batch_Cyth } static PyMethodDef __pyx_methods_3GPy_6models_18state_space_cython_AQcompute_batch_Cython[] = { - {"f_a", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_3f_a, METH_VARARGS|METH_KEYWORDS, __pyx_doc_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_2f_a}, - {"reset", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_5reset, METH_VARARGS|METH_KEYWORDS, __pyx_doc_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_4reset}, - {"Ak", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_7Ak, METH_VARARGS|METH_KEYWORDS, 0}, + {"f_a", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_3f_a, METH_VARARGS|METH_KEYWORDS, __pyx_doc_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_2f_a}, + {"reset", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_5reset, METH_VARARGS|METH_KEYWORDS, __pyx_doc_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_4reset}, + {"Ak", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_7Ak, METH_VARARGS|METH_KEYWORDS, 0}, {"Qk", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_9Qk, METH_O, 0}, {"dAk", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_11dAk, METH_O, 0}, {"dQk", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_13dQk, METH_O, 0}, {"Q_srk", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_15Q_srk, METH_O, __pyx_doc_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_14Q_srk}, + {"Q_inverse", (PyCFunction)(void*)(PyCFunctionWithKeywords)__pyx_pw_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_17Q_inverse, METH_VARARGS|METH_KEYWORDS, __pyx_doc_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_16Q_inverse}, + {"__reduce_cython__", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_19__reduce_cython__, METH_NOARGS, 0}, + {"__setstate_cython__", (PyCFunction)__pyx_pw_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_21__setstate_cython__, METH_O, 0}, {0, 0, 0, 0} }; @@ -23643,8 +32179,9 @@ static PyTypeObject __pyx_type_3GPy_6models_18state_space_cython_AQcompute_batch 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ - #else - 0, /*reserved*/ + #endif + #if PY_MAJOR_VERSION >= 3 + 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ @@ -23694,39 +32231,72 @@ static PyMethodDef __pyx_methods[] = { }; #if PY_MAJOR_VERSION >= 3 +#if CYTHON_PEP489_MULTI_PHASE_INIT +static PyObject* __pyx_pymod_create(PyObject *spec, PyModuleDef *def); /*proto*/ +static int __pyx_pymod_exec_state_space_cython(PyObject* module); /*proto*/ +static PyModuleDef_Slot __pyx_moduledef_slots[] = { + {Py_mod_create, (void*)__pyx_pymod_create}, + {Py_mod_exec, (void*)__pyx_pymod_exec_state_space_cython}, + {0, NULL} +}; +#endif + static struct PyModuleDef __pyx_moduledef = { - #if PY_VERSION_HEX < 0x03020000 - { PyObject_HEAD_INIT(NULL) NULL, 0, NULL }, - #else PyModuleDef_HEAD_INIT, - #endif "state_space_cython", __pyx_k_Contains_some_cython_code_for_s, /* m_doc */ + #if CYTHON_PEP489_MULTI_PHASE_INIT + 0, /* m_size */ + #else -1, /* m_size */ + #endif __pyx_methods /* m_methods */, + #if CYTHON_PEP489_MULTI_PHASE_INIT + __pyx_moduledef_slots, /* m_slots */ + #else NULL, /* m_reload */ + #endif NULL, /* m_traverse */ NULL, /* m_clear */ NULL /* m_free */ }; #endif +#ifndef CYTHON_SMALL_CODE +#if defined(__clang__) + #define CYTHON_SMALL_CODE +#elif defined(__GNUC__) && (__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 3)) + #define CYTHON_SMALL_CODE __attribute__((cold)) +#else + #define CYTHON_SMALL_CODE +#endif +#endif static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_A, __pyx_k_A, sizeof(__pyx_k_A), 0, 0, 1, 1}, + {&__pyx_n_s_AQcompute_batch_Cython, __pyx_k_AQcompute_batch_Cython, sizeof(__pyx_k_AQcompute_batch_Cython), 0, 0, 1, 1}, {&__pyx_n_s_A_time_var_index, __pyx_k_A_time_var_index, sizeof(__pyx_k_A_time_var_index), 0, 0, 1, 1}, {&__pyx_n_s_Ak, __pyx_k_Ak, sizeof(__pyx_k_Ak), 0, 0, 1, 1}, {&__pyx_n_s_As, __pyx_k_As, sizeof(__pyx_k_As), 0, 0, 1, 1}, {&__pyx_n_s_DTYPE, __pyx_k_DTYPE, sizeof(__pyx_k_DTYPE), 0, 0, 1, 1}, {&__pyx_n_s_DTYPE_int, __pyx_k_DTYPE_int, sizeof(__pyx_k_DTYPE_int), 0, 0, 1, 1}, + {&__pyx_n_s_Dynamic_Callables_Cython, __pyx_k_Dynamic_Callables_Cython, sizeof(__pyx_k_Dynamic_Callables_Cython), 0, 0, 1, 1}, {&__pyx_kp_u_Format_string_allocated_too_shor, __pyx_k_Format_string_allocated_too_shor, sizeof(__pyx_k_Format_string_allocated_too_shor), 0, 1, 0, 0}, {&__pyx_kp_u_Format_string_allocated_too_shor_2, __pyx_k_Format_string_allocated_too_shor_2, sizeof(__pyx_k_Format_string_allocated_too_shor_2), 0, 1, 0, 0}, {&__pyx_n_s_GPy_models_state_space_cython, __pyx_k_GPy_models_state_space_cython, sizeof(__pyx_k_GPy_models_state_space_cython), 0, 0, 1, 1}, {&__pyx_n_s_H, __pyx_k_H, sizeof(__pyx_k_H), 0, 0, 1, 1}, {&__pyx_n_s_H_time_var_index, __pyx_k_H_time_var_index, sizeof(__pyx_k_H_time_var_index), 0, 0, 1, 1}, {&__pyx_n_s_Hk, __pyx_k_Hk, sizeof(__pyx_k_Hk), 0, 0, 1, 1}, + {&__pyx_n_s_ImportError, __pyx_k_ImportError, sizeof(__pyx_k_ImportError), 0, 0, 1, 1}, + {&__pyx_kp_s_Incompatible_checksums_s_vs_0x14, __pyx_k_Incompatible_checksums_s_vs_0x14, sizeof(__pyx_k_Incompatible_checksums_s_vs_0x14), 0, 0, 1, 0}, + {&__pyx_kp_s_Incompatible_checksums_s_vs_0x70, __pyx_k_Incompatible_checksums_s_vs_0x70, sizeof(__pyx_k_Incompatible_checksums_s_vs_0x70), 0, 0, 1, 0}, + {&__pyx_kp_s_Incompatible_checksums_s_vs_0x77, __pyx_k_Incompatible_checksums_s_vs_0x77, sizeof(__pyx_k_Incompatible_checksums_s_vs_0x77), 0, 0, 1, 0}, + {&__pyx_kp_s_Incompatible_checksums_s_vs_0x9e, __pyx_k_Incompatible_checksums_s_vs_0x9e, sizeof(__pyx_k_Incompatible_checksums_s_vs_0x9e), 0, 0, 1, 0}, + {&__pyx_kp_s_Incompatible_checksums_s_vs_0xd4, __pyx_k_Incompatible_checksums_s_vs_0xd4, sizeof(__pyx_k_Incompatible_checksums_s_vs_0xd4), 0, 0, 1, 0}, + {&__pyx_kp_s_Incompatible_checksums_s_vs_0xdf, __pyx_k_Incompatible_checksums_s_vs_0xdf, sizeof(__pyx_k_Incompatible_checksums_s_vs_0xdf), 0, 0, 1, 0}, {&__pyx_n_s_K, __pyx_k_K, sizeof(__pyx_k_K), 0, 0, 1, 1}, {&__pyx_kp_s_Kalman_Filter_Update_SVD_S_is_ne, __pyx_k_Kalman_Filter_Update_SVD_S_is_ne, sizeof(__pyx_k_Kalman_Filter_Update_SVD_S_is_ne), 0, 0, 1, 0}, {&__pyx_n_s_M, __pyx_k_M, sizeof(__pyx_k_M), 0, 0, 1, 1}, + {&__pyx_n_s_Measurement_Callables_Cython, __pyx_k_Measurement_Callables_Cython, sizeof(__pyx_k_Measurement_Callables_Cython), 0, 0, 1, 1}, {&__pyx_kp_s_Measurement_dimension_larger_the, __pyx_k_Measurement_dimension_larger_the, sizeof(__pyx_k_Measurement_dimension_larger_the), 0, 0, 1, 0}, {&__pyx_kp_s_Nan_measurements_are_currently_n, __pyx_k_Nan_measurements_are_currently_n, sizeof(__pyx_k_Nan_measurements_are_currently_n), 0, 0, 1, 0}, {&__pyx_kp_s_Nan_values_in_likelihood_update, __pyx_k_Nan_values_in_likelihood_update, sizeof(__pyx_k_Nan_values_in_likelihood_update), 0, 0, 1, 0}, @@ -23736,14 +32306,21 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_P_init, __pyx_k_P_init, sizeof(__pyx_k_P_init), 0, 0, 1, 1}, {&__pyx_n_s_P_pred, __pyx_k_P_pred, sizeof(__pyx_k_P_pred), 0, 0, 1, 1}, {&__pyx_n_s_P_upd, __pyx_k_P_upd, sizeof(__pyx_k_P_upd), 0, 0, 1, 1}, + {&__pyx_n_s_PickleError, __pyx_k_PickleError, sizeof(__pyx_k_PickleError), 0, 0, 1, 1}, {&__pyx_n_s_Prev_cov, __pyx_k_Prev_cov, sizeof(__pyx_k_Prev_cov), 0, 0, 1, 1}, {&__pyx_n_s_Q, __pyx_k_Q, sizeof(__pyx_k_Q), 0, 0, 1, 1}, + {&__pyx_n_s_Q_handling_Cython, __pyx_k_Q_handling_Cython, sizeof(__pyx_k_Q_handling_Cython), 0, 0, 1, 1}, + {&__pyx_n_s_Q_inverse, __pyx_k_Q_inverse, sizeof(__pyx_k_Q_inverse), 0, 0, 1, 1}, + {&__pyx_n_s_Q_inverse_dict, __pyx_k_Q_inverse_dict, sizeof(__pyx_k_Q_inverse_dict), 0, 0, 1, 1}, + {&__pyx_n_s_Q_square_root_dict, __pyx_k_Q_square_root_dict, sizeof(__pyx_k_Q_square_root_dict), 0, 0, 1, 1}, {&__pyx_n_s_Q_sr, __pyx_k_Q_sr, sizeof(__pyx_k_Q_sr), 0, 0, 1, 1}, {&__pyx_n_s_Q_srk, __pyx_k_Q_srk, sizeof(__pyx_k_Q_srk), 0, 0, 1, 1}, + {&__pyx_n_s_Q_suqare_root_dict, __pyx_k_Q_suqare_root_dict, sizeof(__pyx_k_Q_suqare_root_dict), 0, 0, 1, 1}, {&__pyx_n_s_Q_time_var_index, __pyx_k_Q_time_var_index, sizeof(__pyx_k_Q_time_var_index), 0, 0, 1, 1}, {&__pyx_n_s_Qk, __pyx_k_Qk, sizeof(__pyx_k_Qk), 0, 0, 1, 1}, {&__pyx_n_s_Qs, __pyx_k_Qs, sizeof(__pyx_k_Qs), 0, 0, 1, 1}, {&__pyx_n_s_R, __pyx_k_R, sizeof(__pyx_k_R), 0, 0, 1, 1}, + {&__pyx_n_s_R_handling_Cython, __pyx_k_R_handling_Cython, sizeof(__pyx_k_R_handling_Cython), 0, 0, 1, 1}, {&__pyx_n_s_R_isr, __pyx_k_R_isr, sizeof(__pyx_k_R_isr), 0, 0, 1, 1}, {&__pyx_n_s_R_isrk, __pyx_k_R_isrk, sizeof(__pyx_k_R_isrk), 0, 0, 1, 1}, {&__pyx_n_s_R_time_var_index, __pyx_k_R_time_var_index, sizeof(__pyx_k_R_time_var_index), 0, 0, 1, 1}, @@ -23755,6 +32332,8 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_S_pred, __pyx_k_S_pred, sizeof(__pyx_k_S_pred), 0, 0, 1, 1}, {&__pyx_n_s_S_svd, __pyx_k_S_svd, sizeof(__pyx_k_S_svd), 0, 0, 1, 1}, {&__pyx_n_s_S_upd, __pyx_k_S_upd, sizeof(__pyx_k_S_upd), 0, 0, 1, 1}, + {&__pyx_n_s_Std_Dynamic_Callables_Cython, __pyx_k_Std_Dynamic_Callables_Cython, sizeof(__pyx_k_Std_Dynamic_Callables_Cython), 0, 0, 1, 1}, + {&__pyx_n_s_Std_Measurement_Callables_Cython, __pyx_k_Std_Measurement_Callables_Cython, sizeof(__pyx_k_Std_Measurement_Callables_Cython), 0, 0, 1, 1}, {&__pyx_n_s_T, __pyx_k_T, sizeof(__pyx_k_T), 0, 0, 1, 1}, {&__pyx_n_s_U, __pyx_k_U, sizeof(__pyx_k_U), 0, 0, 1, 1}, {&__pyx_n_s_U_upd, __pyx_k_U_upd, sizeof(__pyx_k_U_upd), 0, 0, 1, 1}, @@ -23771,6 +32350,7 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_calc_grad_log_likelihood, __pyx_k_calc_grad_log_likelihood, sizeof(__pyx_k_calc_grad_log_likelihood), 0, 0, 1, 1}, {&__pyx_n_s_calc_log_likelihood, __pyx_k_calc_log_likelihood, sizeof(__pyx_k_calc_log_likelihood), 0, 0, 1, 1}, {&__pyx_n_s_check_finite, __pyx_k_check_finite, sizeof(__pyx_k_check_finite), 0, 0, 1, 1}, + {&__pyx_n_s_cline_in_traceback, __pyx_k_cline_in_traceback, sizeof(__pyx_k_cline_in_traceback), 0, 0, 1, 1}, {&__pyx_n_s_compute_derivatives, __pyx_k_compute_derivatives, sizeof(__pyx_k_compute_derivatives), 0, 0, 1, 1}, {&__pyx_n_s_compute_uv, __pyx_k_compute_uv, sizeof(__pyx_k_compute_uv), 0, 0, 1, 1}, {&__pyx_n_s_cont_discr_kalman_filter_raw_Cy, __pyx_k_cont_discr_kalman_filter_raw_Cy, sizeof(__pyx_k_cont_discr_kalman_filter_raw_Cy), 0, 0, 1, 1}, @@ -23809,6 +32389,7 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_dS, __pyx_k_dS, sizeof(__pyx_k_dS), 0, 0, 1, 1}, {&__pyx_n_s_d_log_likelihood_update, __pyx_k_d_log_likelihood_update, sizeof(__pyx_k_d_log_likelihood_update), 0, 0, 1, 1}, {&__pyx_n_s_diag, __pyx_k_diag, sizeof(__pyx_k_diag), 0, 0, 1, 1}, + {&__pyx_n_s_dict, __pyx_k_dict, sizeof(__pyx_k_dict), 0, 0, 1, 1}, {&__pyx_n_s_dm_init, __pyx_k_dm_init, sizeof(__pyx_k_dm_init), 0, 0, 1, 1}, {&__pyx_n_s_dm_pred, __pyx_k_dm_pred, sizeof(__pyx_k_dm_pred), 0, 0, 1, 1}, {&__pyx_n_s_dm_pred_all_params, __pyx_k_dm_pred_all_params, sizeof(__pyx_k_dm_pred_all_params), 0, 0, 1, 1}, @@ -23821,6 +32402,7 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_f_h, __pyx_k_f_h, sizeof(__pyx_k_f_h), 0, 0, 1, 1}, {&__pyx_n_s_float64, __pyx_k_float64, sizeof(__pyx_k_float64), 0, 0, 1, 1}, {&__pyx_n_s_full_matrices, __pyx_k_full_matrices, sizeof(__pyx_k_full_matrices), 0, 0, 1, 1}, + {&__pyx_n_s_getstate, __pyx_k_getstate, sizeof(__pyx_k_getstate), 0, 0, 1, 1}, {&__pyx_n_s_grad_log_likelihood, __pyx_k_grad_log_likelihood, sizeof(__pyx_k_grad_log_likelihood), 0, 0, 1, 1}, {&__pyx_n_s_grad_params_no, __pyx_k_grad_params_no, sizeof(__pyx_k_grad_params_no), 0, 0, 1, 1}, {&__pyx_n_s_import, __pyx_k_import, sizeof(__pyx_k_import), 0, 0, 1, 1}, @@ -23829,6 +32411,7 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_int64, __pyx_k_int64, sizeof(__pyx_k_int64), 0, 0, 1, 1}, {&__pyx_n_s_isnan, __pyx_k_isnan, sizeof(__pyx_k_isnan), 0, 0, 1, 1}, {&__pyx_n_s_j, __pyx_k_j, sizeof(__pyx_k_j), 0, 0, 1, 1}, + {&__pyx_n_s_jitter, __pyx_k_jitter, sizeof(__pyx_k_jitter), 0, 0, 1, 1}, {&__pyx_n_s_k, __pyx_k_k, sizeof(__pyx_k_k), 0, 0, 1, 1}, {&__pyx_n_s_k_measurment, __pyx_k_k_measurment, sizeof(__pyx_k_k_measurment), 0, 0, 1, 1}, {&__pyx_n_s_kalman_prediction_step_SVD_Cyth, __pyx_k_kalman_prediction_step_SVD_Cyth, sizeof(__pyx_k_kalman_prediction_step_SVD_Cyth), 0, 0, 1, 1}, @@ -23844,11 +32427,15 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_main, __pyx_k_main, sizeof(__pyx_k_main), 0, 0, 1, 1}, {&__pyx_n_s_measurement, __pyx_k_measurement, sizeof(__pyx_k_measurement), 0, 0, 1, 1}, {&__pyx_n_s_measurement_dim_gt_one, __pyx_k_measurement_dim_gt_one, sizeof(__pyx_k_measurement_dim_gt_one), 0, 0, 1, 1}, + {&__pyx_n_s_name, __pyx_k_name, sizeof(__pyx_k_name), 0, 0, 1, 1}, {&__pyx_n_s_nbytes, __pyx_k_nbytes, sizeof(__pyx_k_nbytes), 0, 0, 1, 1}, {&__pyx_kp_u_ndarray_is_not_C_contiguous, __pyx_k_ndarray_is_not_C_contiguous, sizeof(__pyx_k_ndarray_is_not_C_contiguous), 0, 1, 0, 0}, {&__pyx_kp_u_ndarray_is_not_Fortran_contiguou, __pyx_k_ndarray_is_not_Fortran_contiguou, sizeof(__pyx_k_ndarray_is_not_Fortran_contiguou), 0, 1, 0, 0}, + {&__pyx_n_s_new, __pyx_k_new, sizeof(__pyx_k_new), 0, 0, 1, 1}, {&__pyx_n_s_np, __pyx_k_np, sizeof(__pyx_k_np), 0, 0, 1, 1}, {&__pyx_n_s_numpy, __pyx_k_numpy, sizeof(__pyx_k_numpy), 0, 0, 1, 1}, + {&__pyx_kp_s_numpy_core_multiarray_failed_to, __pyx_k_numpy_core_multiarray_failed_to, sizeof(__pyx_k_numpy_core_multiarray_failed_to), 0, 0, 1, 0}, + {&__pyx_kp_s_numpy_core_umath_failed_to_impor, __pyx_k_numpy_core_umath_failed_to_impor, sizeof(__pyx_k_numpy_core_umath_failed_to_impor), 0, 0, 1, 0}, {&__pyx_n_s_overwrite_a, __pyx_k_overwrite_a, sizeof(__pyx_k_overwrite_a), 0, 0, 1, 1}, {&__pyx_n_s_p_P, __pyx_k_p_P, sizeof(__pyx_k_p_P), 0, 0, 1, 1}, {&__pyx_n_s_p_dP, __pyx_k_p_dP, sizeof(__pyx_k_p_dP), 0, 0, 1, 1}, @@ -23862,20 +32449,40 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_param, __pyx_k_param, sizeof(__pyx_k_param), 0, 0, 1, 1}, {&__pyx_n_s_param_number, __pyx_k_param_number, sizeof(__pyx_k_param_number), 0, 0, 1, 1}, {&__pyx_n_s_pi, __pyx_k_pi, sizeof(__pyx_k_pi), 0, 0, 1, 1}, + {&__pyx_n_s_pickle, __pyx_k_pickle, sizeof(__pyx_k_pickle), 0, 0, 1, 1}, {&__pyx_n_s_prev_mean, __pyx_k_prev_mean, sizeof(__pyx_k_prev_mean), 0, 0, 1, 1}, + {&__pyx_n_s_pyx_PickleError, __pyx_k_pyx_PickleError, sizeof(__pyx_k_pyx_PickleError), 0, 0, 1, 1}, + {&__pyx_n_s_pyx_checksum, __pyx_k_pyx_checksum, sizeof(__pyx_k_pyx_checksum), 0, 0, 1, 1}, + {&__pyx_n_s_pyx_result, __pyx_k_pyx_result, sizeof(__pyx_k_pyx_result), 0, 0, 1, 1}, + {&__pyx_n_s_pyx_state, __pyx_k_pyx_state, sizeof(__pyx_k_pyx_state), 0, 0, 1, 1}, + {&__pyx_n_s_pyx_type, __pyx_k_pyx_type, sizeof(__pyx_k_pyx_type), 0, 0, 1, 1}, + {&__pyx_n_s_pyx_unpickle_AQcompute_batch_C, __pyx_k_pyx_unpickle_AQcompute_batch_C, sizeof(__pyx_k_pyx_unpickle_AQcompute_batch_C), 0, 0, 1, 1}, + {&__pyx_n_s_pyx_unpickle_Dynamic_Callables, __pyx_k_pyx_unpickle_Dynamic_Callables, sizeof(__pyx_k_pyx_unpickle_Dynamic_Callables), 0, 0, 1, 1}, + {&__pyx_n_s_pyx_unpickle_Measurement_Calla, __pyx_k_pyx_unpickle_Measurement_Calla, sizeof(__pyx_k_pyx_unpickle_Measurement_Calla), 0, 0, 1, 1}, + {&__pyx_n_s_pyx_unpickle_Q_handling_Cython, __pyx_k_pyx_unpickle_Q_handling_Cython, sizeof(__pyx_k_pyx_unpickle_Q_handling_Cython), 0, 0, 1, 1}, + {&__pyx_n_s_pyx_unpickle_R_handling_Cython, __pyx_k_pyx_unpickle_R_handling_Cython, sizeof(__pyx_k_pyx_unpickle_R_handling_Cython), 0, 0, 1, 1}, + {&__pyx_n_s_pyx_unpickle_Std_Dynamic_Calla, __pyx_k_pyx_unpickle_Std_Dynamic_Calla, sizeof(__pyx_k_pyx_unpickle_Std_Dynamic_Calla), 0, 0, 1, 1}, + {&__pyx_n_s_pyx_unpickle_Std_Measurement_C, __pyx_k_pyx_unpickle_Std_Measurement_C, sizeof(__pyx_k_pyx_unpickle_Std_Measurement_C), 0, 0, 1, 1}, {&__pyx_n_s_pyx_vtable, __pyx_k_pyx_vtable, sizeof(__pyx_k_pyx_vtable), 0, 0, 1, 1}, {&__pyx_n_s_range, __pyx_k_range, sizeof(__pyx_k_range), 0, 0, 1, 1}, {&__pyx_n_s_reconstruct_indices, __pyx_k_reconstruct_indices, sizeof(__pyx_k_reconstruct_indices), 0, 0, 1, 1}, + {&__pyx_n_s_reduce, __pyx_k_reduce, sizeof(__pyx_k_reduce), 0, 0, 1, 1}, + {&__pyx_n_s_reduce_cython, __pyx_k_reduce_cython, sizeof(__pyx_k_reduce_cython), 0, 0, 1, 1}, + {&__pyx_n_s_reduce_ex, __pyx_k_reduce_ex, sizeof(__pyx_k_reduce_ex), 0, 0, 1, 1}, {&__pyx_n_s_regular, __pyx_k_regular, sizeof(__pyx_k_regular), 0, 0, 1, 1}, {&__pyx_n_s_res, __pyx_k_res, sizeof(__pyx_k_res), 0, 0, 1, 1}, {&__pyx_n_s_reset, __pyx_k_reset, sizeof(__pyx_k_reset), 0, 0, 1, 1}, {&__pyx_n_s_ret, __pyx_k_ret, sizeof(__pyx_k_ret), 0, 0, 1, 1}, {&__pyx_n_s_scipy, __pyx_k_scipy, sizeof(__pyx_k_scipy), 0, 0, 1, 1}, + {&__pyx_n_s_setstate, __pyx_k_setstate, sizeof(__pyx_k_setstate), 0, 0, 1, 1}, + {&__pyx_n_s_setstate_cython, __pyx_k_setstate_cython, sizeof(__pyx_k_setstate_cython), 0, 0, 1, 1}, {&__pyx_n_s_shape, __pyx_k_shape, sizeof(__pyx_k_shape), 0, 0, 1, 1}, {&__pyx_n_s_sp, __pyx_k_sp, sizeof(__pyx_k_sp), 0, 0, 1, 1}, {&__pyx_n_s_sqrt, __pyx_k_sqrt, sizeof(__pyx_k_sqrt), 0, 0, 1, 1}, {&__pyx_n_s_state_dim, __pyx_k_state_dim, sizeof(__pyx_k_state_dim), 0, 0, 1, 1}, + {&__pyx_kp_s_state_space_cython_pyx, __pyx_k_state_space_cython_pyx, sizeof(__pyx_k_state_space_cython_pyx), 0, 0, 1, 0}, {&__pyx_n_s_steps_no, __pyx_k_steps_no, sizeof(__pyx_k_steps_no), 0, 0, 1, 1}, + {&__pyx_kp_s_stringsource, __pyx_k_stringsource, sizeof(__pyx_k_stringsource), 0, 0, 1, 0}, {&__pyx_n_s_sum, __pyx_k_sum, sizeof(__pyx_k_sum), 0, 0, 1, 1}, {&__pyx_n_s_super, __pyx_k_super, sizeof(__pyx_k_super), 0, 0, 1, 1}, {&__pyx_n_s_svd, __pyx_k_svd, sizeof(__pyx_k_svd), 0, 0, 1, 1}, @@ -23892,24 +32499,25 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_unique_Q_number, __pyx_k_unique_Q_number, sizeof(__pyx_k_unique_Q_number), 0, 0, 1, 1}, {&__pyx_n_s_unique_R_number, __pyx_k_unique_R_number, sizeof(__pyx_k_unique_R_number), 0, 0, 1, 1}, {&__pyx_kp_u_unknown_dtype_code_in_numpy_pxd, __pyx_k_unknown_dtype_code_in_numpy_pxd, sizeof(__pyx_k_unknown_dtype_code_in_numpy_pxd), 0, 1, 0, 0}, - {&__pyx_kp_s_users_agrigori_SpiderOak_sp_hiv, __pyx_k_users_agrigori_SpiderOak_sp_hiv, sizeof(__pyx_k_users_agrigori_SpiderOak_sp_hiv), 0, 0, 1, 0}, + {&__pyx_n_s_update, __pyx_k_update, sizeof(__pyx_k_update), 0, 0, 1, 1}, {&__pyx_n_s_v, __pyx_k_v, sizeof(__pyx_k_v), 0, 0, 1, 1}, {&__pyx_n_s_vstack, __pyx_k_vstack, sizeof(__pyx_k_vstack), 0, 0, 1, 1}, {&__pyx_n_s_zeros, __pyx_k_zeros, sizeof(__pyx_k_zeros), 0, 0, 1, 1}, {0, 0, 0, 0, 0, 0, 0} }; -static int __Pyx_InitCachedBuiltins(void) { - __pyx_builtin_NotImplemented = __Pyx_GetBuiltinName(__pyx_n_s_NotImplemented); if (!__pyx_builtin_NotImplemented) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 23; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_builtin_ValueError = __Pyx_GetBuiltinName(__pyx_n_s_ValueError); if (!__pyx_builtin_ValueError) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 124; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_builtin_super = __Pyx_GetBuiltinName(__pyx_n_s_super); if (!__pyx_builtin_super) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 177; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_builtin_range = __Pyx_GetBuiltinName(__pyx_n_s_range); if (!__pyx_builtin_range) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 627; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __pyx_builtin_RuntimeError = __Pyx_GetBuiltinName(__pyx_n_s_RuntimeError); if (!__pyx_builtin_RuntimeError) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 802; __pyx_clineno = __LINE__; goto __pyx_L1_error;} +static CYTHON_SMALL_CODE int __Pyx_InitCachedBuiltins(void) { + __pyx_builtin_NotImplemented = __Pyx_GetBuiltinName(__pyx_n_s_NotImplemented); if (!__pyx_builtin_NotImplemented) __PYX_ERR(0, 23, __pyx_L1_error) + __pyx_builtin_ValueError = __Pyx_GetBuiltinName(__pyx_n_s_ValueError); if (!__pyx_builtin_ValueError) __PYX_ERR(0, 124, __pyx_L1_error) + __pyx_builtin_super = __Pyx_GetBuiltinName(__pyx_n_s_super); if (!__pyx_builtin_super) __PYX_ERR(0, 177, __pyx_L1_error) + __pyx_builtin_range = __Pyx_GetBuiltinName(__pyx_n_s_range); if (!__pyx_builtin_range) __PYX_ERR(0, 664, __pyx_L1_error) + __pyx_builtin_RuntimeError = __Pyx_GetBuiltinName(__pyx_n_s_RuntimeError); if (!__pyx_builtin_RuntimeError) __PYX_ERR(2, 856, __pyx_L1_error) + __pyx_builtin_ImportError = __Pyx_GetBuiltinName(__pyx_n_s_ImportError); if (!__pyx_builtin_ImportError) __PYX_ERR(2, 1038, __pyx_L1_error) return 0; __pyx_L1_error:; return -1; } -static int __Pyx_InitCachedConstants(void) { +static CYTHON_SMALL_CODE int __Pyx_InitCachedConstants(void) { __Pyx_RefNannyDeclarations __Pyx_RefNannySetupContext("__Pyx_InitCachedConstants", 0); @@ -23920,7 +32528,7 @@ static int __Pyx_InitCachedConstants(void) { * * cpdef Ak(self, int k, np.ndarray[DTYPE_t, ndim=2] m, np.ndarray[DTYPE_t, ndim=2] P): # returns state iteration matrix */ - __pyx_tuple_ = PyTuple_Pack(1, __pyx_kp_s_cython_f_a_is_not_implemented); if (unlikely(!__pyx_tuple_)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 23; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_tuple_ = PyTuple_Pack(1, __pyx_kp_s_cython_f_a_is_not_implemented); if (unlikely(!__pyx_tuple_)) __PYX_ERR(0, 23, __pyx_L1_error) __Pyx_GOTREF(__pyx_tuple_); __Pyx_GIVEREF(__pyx_tuple_); @@ -23931,7 +32539,7 @@ static int __Pyx_InitCachedConstants(void) { * * cpdef Qk(self, int k): */ - __pyx_tuple__2 = PyTuple_Pack(1, __pyx_kp_s_cython_Ak_is_not_implemented); if (unlikely(!__pyx_tuple__2)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 26; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_tuple__2 = PyTuple_Pack(1, __pyx_kp_s_cython_Ak_is_not_implemented); if (unlikely(!__pyx_tuple__2)) __PYX_ERR(0, 26, __pyx_L1_error) __Pyx_GOTREF(__pyx_tuple__2); __Pyx_GIVEREF(__pyx_tuple__2); @@ -23942,7 +32550,7 @@ static int __Pyx_InitCachedConstants(void) { * * cpdef Q_srk(self, int k): */ - __pyx_tuple__3 = 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__pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - #if CYTHON_COMPILING_IN_PYPY - Py_INCREF(__pyx_b); - #endif - if (PyObject_SetAttrString(__pyx_m, "__builtins__", __pyx_b) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}; - /*--- Initialize various global constants etc. ---*/ - if (unlikely(__Pyx_InitGlobals() < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - #if PY_MAJOR_VERSION < 3 && (__PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT) - if (__Pyx_init_sys_getdefaultencoding_params() < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - #endif - if (__pyx_module_is_main_GPy__models__state_space_cython) { - if (PyObject_SetAttrString(__pyx_m, "__name__", __pyx_n_s_main) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}; - } - #if PY_MAJOR_VERSION >= 3 - { - PyObject *modules = PyImport_GetModuleDict(); 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/*--- Variable export code ---*/ + __Pyx_RefNannyFinishContext(); + return 0; +} + +static int __Pyx_modinit_function_export_code(void) { + __Pyx_RefNannyDeclarations + __Pyx_RefNannySetupContext("__Pyx_modinit_function_export_code", 0); /*--- Function export code ---*/ + __Pyx_RefNannyFinishContext(); + return 0; +} + +static int __Pyx_modinit_type_init_code(void) { + __Pyx_RefNannyDeclarations + __Pyx_RefNannySetupContext("__Pyx_modinit_type_init_code", 0); /*--- Type init code ---*/ __pyx_vtabptr_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython = &__pyx_vtable_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython; __pyx_vtable_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython.f_a = (PyObject *(*)(struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *, int, PyArrayObject *, PyArrayObject *, int __pyx_skip_dispatch))__pyx_f_3GPy_6models_18state_space_cython_24Dynamic_Callables_Cython_f_a; @@ -24888,10 +33536,14 @@ PyMODINIT_FUNC PyInit_state_space_cython(void) __pyx_vtable_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython.dAk = (PyObject *(*)(struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *, int, int __pyx_skip_dispatch))__pyx_f_3GPy_6models_18state_space_cython_24Dynamic_Callables_Cython_dAk; __pyx_vtable_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython.dQk = (PyObject *(*)(struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *, int, int __pyx_skip_dispatch))__pyx_f_3GPy_6models_18state_space_cython_24Dynamic_Callables_Cython_dQk; __pyx_vtable_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython.reset = (PyObject *(*)(struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *, int __pyx_skip_dispatch, struct __pyx_opt_args_3GPy_6models_18state_space_cython_24Dynamic_Callables_Cython_reset *__pyx_optional_args))__pyx_f_3GPy_6models_18state_space_cython_24Dynamic_Callables_Cython_reset; - if (PyType_Ready(&__pyx_type_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 21; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if (PyType_Ready(&__pyx_type_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython) < 0) __PYX_ERR(0, 21, __pyx_L1_error) __pyx_type_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython.tp_print = 0; - if (__Pyx_SetVtable(__pyx_type_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython.tp_dict, __pyx_vtabptr_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 21; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - if (PyObject_SetAttrString(__pyx_m, "Dynamic_Callables_Cython", (PyObject *)&__pyx_type_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 21; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if ((CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP) && likely(!__pyx_type_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython.tp_dictoffset && __pyx_type_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython.tp_getattro == PyObject_GenericGetAttr)) { + __pyx_type_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython.tp_getattro = __Pyx_PyObject_GenericGetAttr; + } + if (__Pyx_SetVtable(__pyx_type_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython.tp_dict, __pyx_vtabptr_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython) < 0) __PYX_ERR(0, 21, __pyx_L1_error) + if (PyObject_SetAttr(__pyx_m, __pyx_n_s_Dynamic_Callables_Cython, (PyObject *)&__pyx_type_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython) < 0) __PYX_ERR(0, 21, __pyx_L1_error) + if (__Pyx_setup_reduce((PyObject*)&__pyx_type_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython) < 0) __PYX_ERR(0, 21, __pyx_L1_error) __pyx_ptype_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython = &__pyx_type_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython; __pyx_vtabptr_3GPy_6models_18state_space_cython_Measurement_Callables_Cython = &__pyx_vtable_3GPy_6models_18state_space_cython_Measurement_Callables_Cython; __pyx_vtable_3GPy_6models_18state_space_cython_Measurement_Callables_Cython.f_h = (PyObject *(*)(struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *, int, PyArrayObject *, PyArrayObject *, int __pyx_skip_dispatch))__pyx_f_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_f_h; @@ -24901,10 +33553,14 @@ PyMODINIT_FUNC PyInit_state_space_cython(void) __pyx_vtable_3GPy_6models_18state_space_cython_Measurement_Callables_Cython.dHk = (PyObject *(*)(struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *, int, int __pyx_skip_dispatch))__pyx_f_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_dHk; __pyx_vtable_3GPy_6models_18state_space_cython_Measurement_Callables_Cython.dRk = (PyObject *(*)(struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *, int, int __pyx_skip_dispatch))__pyx_f_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_dRk; __pyx_vtable_3GPy_6models_18state_space_cython_Measurement_Callables_Cython.reset = (PyObject *(*)(struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *, int __pyx_skip_dispatch, struct __pyx_opt_args_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_reset *__pyx_optional_args))__pyx_f_3GPy_6models_18state_space_cython_28Measurement_Callables_Cython_reset; - if (PyType_Ready(&__pyx_type_3GPy_6models_18state_space_cython_Measurement_Callables_Cython) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 44; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if (PyType_Ready(&__pyx_type_3GPy_6models_18state_space_cython_Measurement_Callables_Cython) < 0) __PYX_ERR(0, 44, __pyx_L1_error) __pyx_type_3GPy_6models_18state_space_cython_Measurement_Callables_Cython.tp_print = 0; - if (__Pyx_SetVtable(__pyx_type_3GPy_6models_18state_space_cython_Measurement_Callables_Cython.tp_dict, __pyx_vtabptr_3GPy_6models_18state_space_cython_Measurement_Callables_Cython) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 44; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - if (PyObject_SetAttrString(__pyx_m, "Measurement_Callables_Cython", (PyObject *)&__pyx_type_3GPy_6models_18state_space_cython_Measurement_Callables_Cython) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 44; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if ((CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP) && likely(!__pyx_type_3GPy_6models_18state_space_cython_Measurement_Callables_Cython.tp_dictoffset && __pyx_type_3GPy_6models_18state_space_cython_Measurement_Callables_Cython.tp_getattro == PyObject_GenericGetAttr)) { + __pyx_type_3GPy_6models_18state_space_cython_Measurement_Callables_Cython.tp_getattro = __Pyx_PyObject_GenericGetAttr; + } + if (__Pyx_SetVtable(__pyx_type_3GPy_6models_18state_space_cython_Measurement_Callables_Cython.tp_dict, __pyx_vtabptr_3GPy_6models_18state_space_cython_Measurement_Callables_Cython) < 0) __PYX_ERR(0, 44, __pyx_L1_error) + if (PyObject_SetAttr(__pyx_m, __pyx_n_s_Measurement_Callables_Cython, (PyObject *)&__pyx_type_3GPy_6models_18state_space_cython_Measurement_Callables_Cython) < 0) __PYX_ERR(0, 44, __pyx_L1_error) + if (__Pyx_setup_reduce((PyObject*)&__pyx_type_3GPy_6models_18state_space_cython_Measurement_Callables_Cython) < 0) __PYX_ERR(0, 44, __pyx_L1_error) __pyx_ptype_3GPy_6models_18state_space_cython_Measurement_Callables_Cython = &__pyx_type_3GPy_6models_18state_space_cython_Measurement_Callables_Cython; __pyx_vtabptr_3GPy_6models_18state_space_cython_R_handling_Cython = &__pyx_vtable_3GPy_6models_18state_space_cython_R_handling_Cython; __pyx_vtable_3GPy_6models_18state_space_cython_R_handling_Cython.__pyx_base = *__pyx_vtabptr_3GPy_6models_18state_space_cython_Measurement_Callables_Cython; @@ -24912,11 +33568,14 @@ PyMODINIT_FUNC PyInit_state_space_cython(void) __pyx_vtable_3GPy_6models_18state_space_cython_R_handling_Cython.__pyx_base.R_isrk = (PyObject *(*)(struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *, int, int __pyx_skip_dispatch))__pyx_f_3GPy_6models_18state_space_cython_17R_handling_Cython_R_isrk; __pyx_vtable_3GPy_6models_18state_space_cython_R_handling_Cython.__pyx_base.dRk = (PyObject *(*)(struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *, int, int __pyx_skip_dispatch))__pyx_f_3GPy_6models_18state_space_cython_17R_handling_Cython_dRk; __pyx_type_3GPy_6models_18state_space_cython_R_handling_Cython.tp_base = __pyx_ptype_3GPy_6models_18state_space_cython_Measurement_Callables_Cython; - if (PyType_Ready(&__pyx_type_3GPy_6models_18state_space_cython_R_handling_Cython) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 66; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if (PyType_Ready(&__pyx_type_3GPy_6models_18state_space_cython_R_handling_Cython) < 0) __PYX_ERR(0, 66, __pyx_L1_error) __pyx_type_3GPy_6models_18state_space_cython_R_handling_Cython.tp_print = 0; + if ((CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP) && likely(!__pyx_type_3GPy_6models_18state_space_cython_R_handling_Cython.tp_dictoffset && __pyx_type_3GPy_6models_18state_space_cython_R_handling_Cython.tp_getattro == PyObject_GenericGetAttr)) { + __pyx_type_3GPy_6models_18state_space_cython_R_handling_Cython.tp_getattro = __Pyx_PyObject_GenericGetAttr; + } #if CYTHON_COMPILING_IN_CPYTHON { - PyObject *wrapper = PyObject_GetAttrString((PyObject *)&__pyx_type_3GPy_6models_18state_space_cython_R_handling_Cython, "__init__"); if (unlikely(!wrapper)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 66; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + PyObject *wrapper = PyObject_GetAttrString((PyObject *)&__pyx_type_3GPy_6models_18state_space_cython_R_handling_Cython, "__init__"); if (unlikely(!wrapper)) __PYX_ERR(0, 66, __pyx_L1_error) if (Py_TYPE(wrapper) == &PyWrapperDescr_Type) { __pyx_wrapperbase_3GPy_6models_18state_space_cython_17R_handling_Cython___init__ = *((PyWrapperDescrObject *)wrapper)->d_base; __pyx_wrapperbase_3GPy_6models_18state_space_cython_17R_handling_Cython___init__.doc = __pyx_doc_3GPy_6models_18state_space_cython_17R_handling_Cython___init__; @@ -24924,8 +33583,9 @@ PyMODINIT_FUNC PyInit_state_space_cython(void) } } #endif - if (__Pyx_SetVtable(__pyx_type_3GPy_6models_18state_space_cython_R_handling_Cython.tp_dict, __pyx_vtabptr_3GPy_6models_18state_space_cython_R_handling_Cython) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 66; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - if (PyObject_SetAttrString(__pyx_m, "R_handling_Cython", (PyObject *)&__pyx_type_3GPy_6models_18state_space_cython_R_handling_Cython) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 66; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if (__Pyx_SetVtable(__pyx_type_3GPy_6models_18state_space_cython_R_handling_Cython.tp_dict, __pyx_vtabptr_3GPy_6models_18state_space_cython_R_handling_Cython) < 0) __PYX_ERR(0, 66, __pyx_L1_error) + if (PyObject_SetAttr(__pyx_m, __pyx_n_s_R_handling_Cython, (PyObject *)&__pyx_type_3GPy_6models_18state_space_cython_R_handling_Cython) < 0) __PYX_ERR(0, 66, __pyx_L1_error) + if (__Pyx_setup_reduce((PyObject*)&__pyx_type_3GPy_6models_18state_space_cython_R_handling_Cython) < 0) __PYX_ERR(0, 66, __pyx_L1_error) __pyx_ptype_3GPy_6models_18state_space_cython_R_handling_Cython = &__pyx_type_3GPy_6models_18state_space_cython_R_handling_Cython; __pyx_vtabptr_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython = &__pyx_vtable_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython; __pyx_vtable_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython.__pyx_base = *__pyx_vtabptr_3GPy_6models_18state_space_cython_R_handling_Cython; @@ -24933,10 +33593,14 @@ PyMODINIT_FUNC PyInit_state_space_cython(void) __pyx_vtable_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython.__pyx_base.__pyx_base.Hk = (PyObject *(*)(struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *, int, PyArrayObject *, PyArrayObject *, int __pyx_skip_dispatch))__pyx_f_3GPy_6models_18state_space_cython_32Std_Measurement_Callables_Cython_Hk; __pyx_vtable_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython.__pyx_base.__pyx_base.dHk = (PyObject *(*)(struct __pyx_obj_3GPy_6models_18state_space_cython_Measurement_Callables_Cython *, int, int __pyx_skip_dispatch))__pyx_f_3GPy_6models_18state_space_cython_32Std_Measurement_Callables_Cython_dHk; __pyx_type_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython.tp_base = __pyx_ptype_3GPy_6models_18state_space_cython_R_handling_Cython; - if (PyType_Ready(&__pyx_type_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 165; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if (PyType_Ready(&__pyx_type_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython) < 0) __PYX_ERR(0, 165, __pyx_L1_error) __pyx_type_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython.tp_print = 0; - if (__Pyx_SetVtable(__pyx_type_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython.tp_dict, __pyx_vtabptr_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 165; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - if (PyObject_SetAttrString(__pyx_m, "Std_Measurement_Callables_Cython", (PyObject *)&__pyx_type_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 165; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if ((CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP) && likely(!__pyx_type_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython.tp_dictoffset && __pyx_type_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython.tp_getattro == PyObject_GenericGetAttr)) { + __pyx_type_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython.tp_getattro = __Pyx_PyObject_GenericGetAttr; + } + if (__Pyx_SetVtable(__pyx_type_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython.tp_dict, __pyx_vtabptr_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython) < 0) __PYX_ERR(0, 165, __pyx_L1_error) + if (PyObject_SetAttr(__pyx_m, __pyx_n_s_Std_Measurement_Callables_Cython, (PyObject *)&__pyx_type_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython) < 0) __PYX_ERR(0, 165, __pyx_L1_error) + if (__Pyx_setup_reduce((PyObject*)&__pyx_type_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython) < 0) __PYX_ERR(0, 165, __pyx_L1_error) __pyx_ptype_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython = &__pyx_type_3GPy_6models_18state_space_cython_Std_Measurement_Callables_Cython; __pyx_vtabptr_3GPy_6models_18state_space_cython_Q_handling_Cython = &__pyx_vtable_3GPy_6models_18state_space_cython_Q_handling_Cython; __pyx_vtable_3GPy_6models_18state_space_cython_Q_handling_Cython.__pyx_base = *__pyx_vtabptr_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython; @@ -24944,11 +33608,14 @@ PyMODINIT_FUNC PyInit_state_space_cython(void) __pyx_vtable_3GPy_6models_18state_space_cython_Q_handling_Cython.__pyx_base.Q_srk = (PyObject *(*)(struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *, int, int __pyx_skip_dispatch))__pyx_f_3GPy_6models_18state_space_cython_17Q_handling_Cython_Q_srk; __pyx_vtable_3GPy_6models_18state_space_cython_Q_handling_Cython.__pyx_base.dQk = (PyObject *(*)(struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *, int, int __pyx_skip_dispatch))__pyx_f_3GPy_6models_18state_space_cython_17Q_handling_Cython_dQk; __pyx_type_3GPy_6models_18state_space_cython_Q_handling_Cython.tp_base = __pyx_ptype_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython; - if (PyType_Ready(&__pyx_type_3GPy_6models_18state_space_cython_Q_handling_Cython) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 212; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if (PyType_Ready(&__pyx_type_3GPy_6models_18state_space_cython_Q_handling_Cython) < 0) __PYX_ERR(0, 212, __pyx_L1_error) __pyx_type_3GPy_6models_18state_space_cython_Q_handling_Cython.tp_print = 0; + if ((CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP) && likely(!__pyx_type_3GPy_6models_18state_space_cython_Q_handling_Cython.tp_dictoffset && __pyx_type_3GPy_6models_18state_space_cython_Q_handling_Cython.tp_getattro == PyObject_GenericGetAttr)) { + __pyx_type_3GPy_6models_18state_space_cython_Q_handling_Cython.tp_getattro = __Pyx_PyObject_GenericGetAttr; + } #if CYTHON_COMPILING_IN_CPYTHON { - PyObject *wrapper = PyObject_GetAttrString((PyObject *)&__pyx_type_3GPy_6models_18state_space_cython_Q_handling_Cython, "__init__"); if (unlikely(!wrapper)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 212; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + PyObject *wrapper = PyObject_GetAttrString((PyObject *)&__pyx_type_3GPy_6models_18state_space_cython_Q_handling_Cython, "__init__"); if (unlikely(!wrapper)) __PYX_ERR(0, 212, __pyx_L1_error) if (Py_TYPE(wrapper) == &PyWrapperDescr_Type) { __pyx_wrapperbase_3GPy_6models_18state_space_cython_17Q_handling_Cython___init__ = *((PyWrapperDescrObject *)wrapper)->d_base; __pyx_wrapperbase_3GPy_6models_18state_space_cython_17Q_handling_Cython___init__.doc = __pyx_doc_3GPy_6models_18state_space_cython_17Q_handling_Cython___init__; @@ -24956,8 +33623,9 @@ PyMODINIT_FUNC PyInit_state_space_cython(void) } } #endif - if (__Pyx_SetVtable(__pyx_type_3GPy_6models_18state_space_cython_Q_handling_Cython.tp_dict, __pyx_vtabptr_3GPy_6models_18state_space_cython_Q_handling_Cython) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 212; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - if (PyObject_SetAttrString(__pyx_m, "Q_handling_Cython", (PyObject *)&__pyx_type_3GPy_6models_18state_space_cython_Q_handling_Cython) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 212; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if (__Pyx_SetVtable(__pyx_type_3GPy_6models_18state_space_cython_Q_handling_Cython.tp_dict, __pyx_vtabptr_3GPy_6models_18state_space_cython_Q_handling_Cython) < 0) __PYX_ERR(0, 212, __pyx_L1_error) + if (PyObject_SetAttr(__pyx_m, __pyx_n_s_Q_handling_Cython, (PyObject *)&__pyx_type_3GPy_6models_18state_space_cython_Q_handling_Cython) < 0) __PYX_ERR(0, 212, __pyx_L1_error) + if (__Pyx_setup_reduce((PyObject*)&__pyx_type_3GPy_6models_18state_space_cython_Q_handling_Cython) < 0) __PYX_ERR(0, 212, __pyx_L1_error) __pyx_ptype_3GPy_6models_18state_space_cython_Q_handling_Cython = &__pyx_type_3GPy_6models_18state_space_cython_Q_handling_Cython; __pyx_vtabptr_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython = &__pyx_vtable_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython; __pyx_vtable_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython.__pyx_base = *__pyx_vtabptr_3GPy_6models_18state_space_cython_Q_handling_Cython; @@ -24966,10 +33634,14 @@ PyMODINIT_FUNC PyInit_state_space_cython(void) __pyx_vtable_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython.__pyx_base.__pyx_base.dAk = (PyObject *(*)(struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *, int, int __pyx_skip_dispatch))__pyx_f_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython_dAk; __pyx_vtable_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython.__pyx_base.__pyx_base.reset = (PyObject *(*)(struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *, int __pyx_skip_dispatch, struct __pyx_opt_args_3GPy_6models_18state_space_cython_24Dynamic_Callables_Cython_reset *__pyx_optional_args))__pyx_f_3GPy_6models_18state_space_cython_28Std_Dynamic_Callables_Cython_reset; __pyx_type_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython.tp_base = __pyx_ptype_3GPy_6models_18state_space_cython_Q_handling_Cython; - if (PyType_Ready(&__pyx_type_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 318; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if (PyType_Ready(&__pyx_type_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython) < 0) __PYX_ERR(0, 318, __pyx_L1_error) __pyx_type_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython.tp_print = 0; - if (__Pyx_SetVtable(__pyx_type_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython.tp_dict, __pyx_vtabptr_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 318; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - if (PyObject_SetAttrString(__pyx_m, "Std_Dynamic_Callables_Cython", (PyObject *)&__pyx_type_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 318; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if ((CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP) && likely(!__pyx_type_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython.tp_dictoffset && __pyx_type_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython.tp_getattro == PyObject_GenericGetAttr)) { + __pyx_type_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython.tp_getattro = __Pyx_PyObject_GenericGetAttr; + } + if (__Pyx_SetVtable(__pyx_type_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython.tp_dict, __pyx_vtabptr_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython) < 0) __PYX_ERR(0, 318, __pyx_L1_error) + if (PyObject_SetAttr(__pyx_m, __pyx_n_s_Std_Dynamic_Callables_Cython, (PyObject *)&__pyx_type_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython) < 0) __PYX_ERR(0, 318, __pyx_L1_error) + if (__Pyx_setup_reduce((PyObject*)&__pyx_type_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython) < 0) __PYX_ERR(0, 318, __pyx_L1_error) __pyx_ptype_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython = &__pyx_type_3GPy_6models_18state_space_cython_Std_Dynamic_Callables_Cython; __pyx_vtabptr_3GPy_6models_18state_space_cython_AQcompute_batch_Cython = &__pyx_vtable_3GPy_6models_18state_space_cython_AQcompute_batch_Cython; __pyx_vtable_3GPy_6models_18state_space_cython_AQcompute_batch_Cython.__pyx_base = *__pyx_vtabptr_3GPy_6models_18state_space_cython_Q_handling_Cython; @@ -24980,12 +33652,16 @@ PyMODINIT_FUNC PyInit_state_space_cython(void) __pyx_vtable_3GPy_6models_18state_space_cython_AQcompute_batch_Cython.__pyx_base.__pyx_base.dAk = (PyObject *(*)(struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *, int, int __pyx_skip_dispatch))__pyx_f_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_dAk; __pyx_vtable_3GPy_6models_18state_space_cython_AQcompute_batch_Cython.__pyx_base.__pyx_base.dQk = (PyObject *(*)(struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *, int, int __pyx_skip_dispatch))__pyx_f_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_dQk; __pyx_vtable_3GPy_6models_18state_space_cython_AQcompute_batch_Cython.__pyx_base.__pyx_base.reset = (PyObject *(*)(struct __pyx_obj_3GPy_6models_18state_space_cython_Dynamic_Callables_Cython *, int __pyx_skip_dispatch, struct __pyx_opt_args_3GPy_6models_18state_space_cython_24Dynamic_Callables_Cython_reset *__pyx_optional_args))__pyx_f_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_reset; + __pyx_vtable_3GPy_6models_18state_space_cython_AQcompute_batch_Cython.Q_inverse = (PyObject *(*)(struct __pyx_obj_3GPy_6models_18state_space_cython_AQcompute_batch_Cython *, int, int __pyx_skip_dispatch, struct __pyx_opt_args_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_Q_inverse *__pyx_optional_args))__pyx_f_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_Q_inverse; __pyx_type_3GPy_6models_18state_space_cython_AQcompute_batch_Cython.tp_base = __pyx_ptype_3GPy_6models_18state_space_cython_Q_handling_Cython; - if (PyType_Ready(&__pyx_type_3GPy_6models_18state_space_cython_AQcompute_batch_Cython) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 373; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if (PyType_Ready(&__pyx_type_3GPy_6models_18state_space_cython_AQcompute_batch_Cython) < 0) __PYX_ERR(0, 373, __pyx_L1_error) __pyx_type_3GPy_6models_18state_space_cython_AQcompute_batch_Cython.tp_print = 0; + if ((CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP) && likely(!__pyx_type_3GPy_6models_18state_space_cython_AQcompute_batch_Cython.tp_dictoffset && __pyx_type_3GPy_6models_18state_space_cython_AQcompute_batch_Cython.tp_getattro == PyObject_GenericGetAttr)) { + __pyx_type_3GPy_6models_18state_space_cython_AQcompute_batch_Cython.tp_getattro = __Pyx_PyObject_GenericGetAttr; + } #if CYTHON_COMPILING_IN_CPYTHON { - PyObject *wrapper = PyObject_GetAttrString((PyObject *)&__pyx_type_3GPy_6models_18state_space_cython_AQcompute_batch_Cython, "__init__"); if (unlikely(!wrapper)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 373; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + PyObject *wrapper = PyObject_GetAttrString((PyObject *)&__pyx_type_3GPy_6models_18state_space_cython_AQcompute_batch_Cython, "__init__"); if (unlikely(!wrapper)) __PYX_ERR(0, 373, __pyx_L1_error) if (Py_TYPE(wrapper) == &PyWrapperDescr_Type) { __pyx_wrapperbase_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython___init__ = *((PyWrapperDescrObject *)wrapper)->d_base; __pyx_wrapperbase_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython___init__.doc = __pyx_doc_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython___init__; @@ -24993,25 +33669,266 @@ PyMODINIT_FUNC PyInit_state_space_cython(void) } } #endif - if (__Pyx_SetVtable(__pyx_type_3GPy_6models_18state_space_cython_AQcompute_batch_Cython.tp_dict, __pyx_vtabptr_3GPy_6models_18state_space_cython_AQcompute_batch_Cython) < 0) {__pyx_filename = __pyx_f[0]; 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if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1, __pyx_L1_error) + __Pyx_GOTREF(__pyx_t_1); + if (PyDict_SetItem(__pyx_d, __pyx_n_s_pyx_unpickle_Dynamic_Callables, __pyx_t_1) < 0) __PYX_ERR(1, 1, __pyx_L1_error) + __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; + + /* "(tree fragment)":9 + * __pyx_unpickle_Dynamic_Callables_Cython__set_state( __pyx_result, __pyx_state) + * return __pyx_result + * cdef __pyx_unpickle_Dynamic_Callables_Cython__set_state(Dynamic_Callables_Cython __pyx_result, tuple __pyx_state): # <<<<<<<<<<<<<< + * if len(__pyx_state) > 0 and hasattr(__pyx_result, '__dict__'): + * __pyx_result.__dict__.update(__pyx_state[0]) + */ + __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_3GPy_6models_18state_space_cython_9__pyx_unpickle_Measurement_Callables_Cython, NULL, __pyx_n_s_GPy_models_state_space_cython); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1, __pyx_L1_error) + __Pyx_GOTREF(__pyx_t_1); + if (PyDict_SetItem(__pyx_d, __pyx_n_s_pyx_unpickle_Measurement_Calla, __pyx_t_1) < 0) __PYX_ERR(1, 1, __pyx_L1_error) + __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; + + /* "(tree fragment)":1 + * def __pyx_unpickle_R_handling_Cython(__pyx_type, long __pyx_checksum, __pyx_state): # <<<<<<<<<<<<<< + * if __pyx_checksum != 0x9e97ca7: + * from pickle import PickleError as __pyx_PickleError + */ + __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_3GPy_6models_18state_space_cython_11__pyx_unpickle_R_handling_Cython, NULL, __pyx_n_s_GPy_models_state_space_cython); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1, __pyx_L1_error) + __Pyx_GOTREF(__pyx_t_1); + if (PyDict_SetItem(__pyx_d, __pyx_n_s_pyx_unpickle_R_handling_Cython, __pyx_t_1) < 0) __PYX_ERR(1, 1, __pyx_L1_error) + __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; + + /* "(tree fragment)":9 + * __pyx_unpickle_R_handling_Cython__set_state( __pyx_result, __pyx_state) + * return __pyx_result + * cdef __pyx_unpickle_R_handling_Cython__set_state(R_handling_Cython __pyx_result, tuple __pyx_state): # <<<<<<<<<<<<<< + * __pyx_result.R = __pyx_state[0]; __pyx_result.R_square_root = __pyx_state[1]; __pyx_result.R_time_var_index = __pyx_state[2]; __pyx_result.dR = __pyx_state[3]; __pyx_result.index = __pyx_state[4]; __pyx_result.svd_each_time = __pyx_state[5] + * if len(__pyx_state) > 6 and hasattr(__pyx_result, '__dict__'): + */ + __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_3GPy_6models_18state_space_cython_13__pyx_unpickle_Std_Measurement_Callables_Cython, NULL, __pyx_n_s_GPy_models_state_space_cython); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1, __pyx_L1_error) + __Pyx_GOTREF(__pyx_t_1); + if (PyDict_SetItem(__pyx_d, __pyx_n_s_pyx_unpickle_Std_Measurement_C, __pyx_t_1) < 0) __PYX_ERR(1, 1, __pyx_L1_error) + __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; + + /* "(tree fragment)":1 + * def __pyx_unpickle_Q_handling_Cython(__pyx_type, long __pyx_checksum, __pyx_state): # <<<<<<<<<<<<<< + * if __pyx_checksum != 0x77b5360: + * from pickle import PickleError as __pyx_PickleError + */ + __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_3GPy_6models_18state_space_cython_15__pyx_unpickle_Q_handling_Cython, NULL, __pyx_n_s_GPy_models_state_space_cython); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1, __pyx_L1_error) + __Pyx_GOTREF(__pyx_t_1); + if (PyDict_SetItem(__pyx_d, __pyx_n_s_pyx_unpickle_Q_handling_Cython, __pyx_t_1) < 0) __PYX_ERR(1, 1, __pyx_L1_error) + __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; + + /* "(tree fragment)":9 + * __pyx_unpickle_Q_handling_Cython__set_state( __pyx_result, __pyx_state) + * return __pyx_result + * cdef __pyx_unpickle_Q_handling_Cython__set_state(Q_handling_Cython __pyx_result, tuple __pyx_state): # <<<<<<<<<<<<<< + * __pyx_result.Q = __pyx_state[0]; __pyx_result.Q_square_root = __pyx_state[1]; __pyx_result.Q_time_var_index = __pyx_state[2]; __pyx_result.dQ = __pyx_state[3]; __pyx_result.index = __pyx_state[4]; __pyx_result.svd_each_time = __pyx_state[5] + * if len(__pyx_state) > 6 and hasattr(__pyx_result, '__dict__'): + */ + __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_3GPy_6models_18state_space_cython_17__pyx_unpickle_Std_Dynamic_Callables_Cython, NULL, __pyx_n_s_GPy_models_state_space_cython); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1, __pyx_L1_error) + __Pyx_GOTREF(__pyx_t_1); + if (PyDict_SetItem(__pyx_d, __pyx_n_s_pyx_unpickle_Std_Dynamic_Calla, __pyx_t_1) < 0) __PYX_ERR(1, 1, __pyx_L1_error) + __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; + + /* "(tree fragment)":1 + * def __pyx_unpickle_AQcompute_batch_Cython(__pyx_type, long __pyx_checksum, __pyx_state): # <<<<<<<<<<<<<< + * if __pyx_checksum != 0x146e1f7: + * from pickle import PickleError as __pyx_PickleError + */ + __pyx_t_1 = PyCFunction_NewEx(&__pyx_mdef_3GPy_6models_18state_space_cython_19__pyx_unpickle_AQcompute_batch_Cython, NULL, __pyx_n_s_GPy_models_state_space_cython); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 1, __pyx_L1_error) + __Pyx_GOTREF(__pyx_t_1); + if (PyDict_SetItem(__pyx_d, __pyx_n_s_pyx_unpickle_AQcompute_batch_C, __pyx_t_1) < 0) __PYX_ERR(1, 1, __pyx_L1_error) __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; /* "GPy/models/state_space_cython.pyx":1 @@ -25108,17 +34101,17 @@ PyMODINIT_FUNC PyInit_state_space_cython(void) * """ * Contains some cython code for state space modelling. */ - __pyx_t_1 = PyDict_New(); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_1 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 1, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); - if (PyDict_SetItem(__pyx_d, __pyx_n_s_test, __pyx_t_1) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if (PyDict_SetItem(__pyx_d, __pyx_n_s_test, __pyx_t_1) < 0) __PYX_ERR(0, 1, __pyx_L1_error) __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; - /* "../../../../../../../Work/anaconda/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":979 - * arr.base = baseptr + /* "../../../../../anaconda3/envs/bayesopt/lib/python3.7/site-packages/Cython/Includes/numpy/__init__.pxd":1046 + * raise ImportError("numpy.core.umath failed to import") * - * cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<< - * if arr.base is NULL: - * return None + * cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<< + * try: + * _import_umath() */ /*--- Wrapped vars code ---*/ @@ -25131,27 +34124,30 @@ PyMODINIT_FUNC PyInit_state_space_cython(void) if (__pyx_d) { __Pyx_AddTraceback("init GPy.models.state_space_cython", __pyx_clineno, __pyx_lineno, __pyx_filename); } - Py_DECREF(__pyx_m); __pyx_m = 0; + Py_CLEAR(__pyx_m); } else if (!PyErr_Occurred()) { PyErr_SetString(PyExc_ImportError, "init GPy.models.state_space_cython"); } __pyx_L0:; __Pyx_RefNannyFinishContext(); - #if PY_MAJOR_VERSION < 3 - return; - #else + #if CYTHON_PEP489_MULTI_PHASE_INIT + return (__pyx_m != NULL) ? 0 : -1; + #elif PY_MAJOR_VERSION >= 3 return __pyx_m; + #else + return; #endif } /* --- Runtime support code --- */ +/* Refnanny */ #if CYTHON_REFNANNY static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname) { PyObject *m = NULL, *p = NULL; void *r = NULL; - m = PyImport_ImportModule((char *)modname); + m = PyImport_ImportModule(modname); if (!m) goto end; - p = PyObject_GetAttrString(m, (char *)"RefNannyAPI"); + p = PyObject_GetAttrString(m, "RefNannyAPI"); if (!p) goto end; r = PyLong_AsVoidPtr(p); end: @@ -25161,6 +34157,21 @@ end: } #endif +/* PyObjectGetAttrStr */ +#if CYTHON_USE_TYPE_SLOTS +static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name) { + PyTypeObject* tp = Py_TYPE(obj); + if (likely(tp->tp_getattro)) + return tp->tp_getattro(obj, attr_name); +#if PY_MAJOR_VERSION < 3 + if (likely(tp->tp_getattr)) + return tp->tp_getattr(obj, PyString_AS_STRING(attr_name)); +#endif + return PyObject_GetAttr(obj, attr_name); +} +#endif + +/* GetBuiltinName */ static PyObject *__Pyx_GetBuiltinName(PyObject *name) { PyObject* result = __Pyx_PyObject_GetAttrStr(__pyx_b, name); if (unlikely(!result)) { @@ -25174,10 +34185,18 @@ static PyObject *__Pyx_GetBuiltinName(PyObject *name) { return result; } -static CYTHON_INLINE int __Pyx_IsLittleEndian(void) { - unsigned int n = 1; - return *(unsigned char*)(&n) != 0; +/* IsLittleEndian */ +static CYTHON_INLINE int __Pyx_Is_Little_Endian(void) +{ + union { + uint32_t u32; + uint8_t u8[4]; + } S; + S.u32 = 0x01020304; + return S.u8[0] == 4; } + +/* BufferFormatCheck */ static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx, __Pyx_BufFmt_StackElem* stack, __Pyx_TypeInfo* type) { @@ -25499,7 +34518,7 @@ static int __Pyx_BufFmt_ProcessTypeChunk(__Pyx_BufFmt_Context* ctx) { ctx->is_complex = 0; return 0; } -static CYTHON_INLINE PyObject * +static PyObject * __pyx_buffmt_parse_array(__Pyx_BufFmt_Context* ctx, const char** tsp) { const char *ts = *tsp; @@ -25564,7 +34583,7 @@ static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const cha ++ts; break; case '<': - if (!__Pyx_IsLittleEndian()) { + if (!__Pyx_Is_Little_Endian()) { PyErr_SetString(PyExc_ValueError, "Little-endian buffer not supported on big-endian compiler"); return NULL; } @@ -25573,7 +34592,7 @@ static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const cha break; case '>': case '!': - if (__Pyx_IsLittleEndian()) { + if (__Pyx_Is_Little_Endian()) { PyErr_SetString(PyExc_ValueError, "Big-endian buffer not supported on little-endian compiler"); return NULL; } @@ -25637,6 +34656,7 @@ static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const cha __Pyx_BufFmt_RaiseUnexpectedChar('Z'); return NULL; } + CYTHON_FALLTHROUGH; case 'c': case 'b': case 'B': case 'h': case 'H': case 'i': case 'I': case 'l': case 'L': case 'q': case 'Q': case 'f': case 'd': case 'g': @@ -25649,6 +34669,7 @@ static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const cha ++ts; break; } + CYTHON_FALLTHROUGH; case 's': if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; ctx->enc_count = ctx->new_count; @@ -25676,24 +34697,30 @@ static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const cha } } } -static CYTHON_INLINE void __Pyx_ZeroBuffer(Py_buffer* buf) { + +/* BufferGetAndValidate */ + static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info) { + if (unlikely(info->buf == NULL)) return; + if (info->suboffsets == __Pyx_minusones) info->suboffsets = NULL; + __Pyx_ReleaseBuffer(info); +} +static void __Pyx_ZeroBuffer(Py_buffer* buf) { buf->buf = NULL; buf->obj = NULL; buf->strides = __Pyx_zeros; buf->shape = __Pyx_zeros; buf->suboffsets = __Pyx_minusones; } -static CYTHON_INLINE int __Pyx_GetBufferAndValidate( +static int __Pyx__GetBufferAndValidate( Py_buffer* buf, PyObject* obj, __Pyx_TypeInfo* dtype, int flags, int nd, int cast, __Pyx_BufFmt_StackElem* stack) { - if (obj == Py_None || obj == NULL) { - __Pyx_ZeroBuffer(buf); - return 0; - } buf->buf = NULL; - if (__Pyx_GetBuffer(obj, buf, flags) == -1) goto fail; - if (buf->ndim != nd) { + if (unlikely(__Pyx_GetBuffer(obj, buf, flags) == -1)) { + __Pyx_ZeroBuffer(buf); + return -1; + } + if (unlikely(buf->ndim != nd)) { PyErr_Format(PyExc_ValueError, "Buffer has wrong number of dimensions (expected %d, got %d)", nd, buf->ndim); @@ -25704,7 +34731,7 @@ static CYTHON_INLINE int __Pyx_GetBufferAndValidate( __Pyx_BufFmt_Init(&ctx, stack, dtype); if (!__Pyx_BufFmt_CheckString(&ctx, buf->format)) goto fail; } - if ((unsigned)buf->itemsize != dtype->size) { + if (unlikely((unsigned)buf->itemsize != dtype->size)) { PyErr_Format(PyExc_ValueError, "Item size of buffer (%" CYTHON_FORMAT_SSIZE_T "d byte%s) does not match size of '%s' (%" CYTHON_FORMAT_SSIZE_T "d byte%s)", buf->itemsize, (buf->itemsize > 1) ? "s" : "", @@ -25714,16 +34741,154 @@ static CYTHON_INLINE int __Pyx_GetBufferAndValidate( if (buf->suboffsets == NULL) buf->suboffsets = __Pyx_minusones; return 0; fail:; - __Pyx_ZeroBuffer(buf); + __Pyx_SafeReleaseBuffer(buf); return -1; } -static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info) { - if (info->buf == NULL) return; - if (info->suboffsets == __Pyx_minusones) info->suboffsets = NULL; - __Pyx_ReleaseBuffer(info); -} -#if CYTHON_COMPILING_IN_CPYTHON +/* PyFunctionFastCall */ + #if CYTHON_FAST_PYCALL +static PyObject* __Pyx_PyFunction_FastCallNoKw(PyCodeObject *co, PyObject **args, Py_ssize_t na, + PyObject *globals) { + PyFrameObject *f; + PyThreadState *tstate = __Pyx_PyThreadState_Current; + PyObject **fastlocals; + Py_ssize_t i; + PyObject *result; + assert(globals != NULL); + /* XXX Perhaps we should create a specialized + PyFrame_New() that doesn't take locals, but does + take builtins without sanity checking them. + */ + assert(tstate != NULL); + f = PyFrame_New(tstate, co, globals, NULL); + if (f == NULL) { + return NULL; + } + fastlocals = __Pyx_PyFrame_GetLocalsplus(f); + for (i = 0; i < na; i++) { + Py_INCREF(*args); + fastlocals[i] = *args++; + } + result = PyEval_EvalFrameEx(f,0); + ++tstate->recursion_depth; + Py_DECREF(f); + --tstate->recursion_depth; + return result; +} +#if 1 || PY_VERSION_HEX < 0x030600B1 +static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, int nargs, PyObject *kwargs) { + PyCodeObject *co = (PyCodeObject *)PyFunction_GET_CODE(func); + PyObject *globals = PyFunction_GET_GLOBALS(func); + PyObject *argdefs = PyFunction_GET_DEFAULTS(func); + PyObject *closure; +#if PY_MAJOR_VERSION >= 3 + PyObject *kwdefs; +#endif + PyObject *kwtuple, **k; + PyObject **d; + Py_ssize_t nd; + Py_ssize_t nk; + PyObject *result; + assert(kwargs == NULL || PyDict_Check(kwargs)); + nk = kwargs ? PyDict_Size(kwargs) : 0; + if (Py_EnterRecursiveCall((char*)" while calling a Python object")) { + return NULL; + } + if ( +#if PY_MAJOR_VERSION >= 3 + co->co_kwonlyargcount == 0 && +#endif + likely(kwargs == NULL || nk == 0) && + co->co_flags == (CO_OPTIMIZED | CO_NEWLOCALS | CO_NOFREE)) { + if (argdefs == NULL && co->co_argcount == nargs) { + result = __Pyx_PyFunction_FastCallNoKw(co, args, nargs, globals); + goto done; + } + else if (nargs == 0 && argdefs != NULL + && co->co_argcount == Py_SIZE(argdefs)) { + /* function called with no arguments, but all parameters have + a default value: use default values as arguments .*/ + args = &PyTuple_GET_ITEM(argdefs, 0); + result =__Pyx_PyFunction_FastCallNoKw(co, args, Py_SIZE(argdefs), globals); + goto done; + } + } + if (kwargs != NULL) { + Py_ssize_t pos, i; + kwtuple = PyTuple_New(2 * nk); + if (kwtuple == NULL) { + result = NULL; + goto done; + } + k = &PyTuple_GET_ITEM(kwtuple, 0); + pos = i = 0; + while (PyDict_Next(kwargs, &pos, &k[i], &k[i+1])) { + Py_INCREF(k[i]); + Py_INCREF(k[i+1]); + i += 2; + } + nk = i / 2; + } + else { + kwtuple = NULL; + k = NULL; + } + closure = PyFunction_GET_CLOSURE(func); +#if PY_MAJOR_VERSION >= 3 + kwdefs = PyFunction_GET_KW_DEFAULTS(func); +#endif + if (argdefs != NULL) { + d = &PyTuple_GET_ITEM(argdefs, 0); + nd = Py_SIZE(argdefs); + } + else { + d = NULL; + nd = 0; + } +#if PY_MAJOR_VERSION >= 3 + result = PyEval_EvalCodeEx((PyObject*)co, globals, (PyObject *)NULL, + args, nargs, + k, (int)nk, + d, (int)nd, kwdefs, closure); +#else + result = PyEval_EvalCodeEx(co, globals, (PyObject *)NULL, + args, nargs, + k, (int)nk, + d, (int)nd, closure); +#endif + Py_XDECREF(kwtuple); +done: + Py_LeaveRecursiveCall(); + return result; +} +#endif +#endif + +/* PyCFunctionFastCall */ + #if CYTHON_FAST_PYCCALL +static CYTHON_INLINE PyObject * __Pyx_PyCFunction_FastCall(PyObject *func_obj, PyObject **args, Py_ssize_t nargs) { + PyCFunctionObject *func = (PyCFunctionObject*)func_obj; + PyCFunction meth = PyCFunction_GET_FUNCTION(func); + PyObject *self = PyCFunction_GET_SELF(func); + int flags = PyCFunction_GET_FLAGS(func); + assert(PyCFunction_Check(func)); + assert(METH_FASTCALL == (flags & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS | METH_STACKLESS))); + assert(nargs >= 0); + assert(nargs == 0 || args != NULL); + /* _PyCFunction_FastCallDict() must not be called with an exception set, + because it may clear it (directly or indirectly) and so the + caller loses its exception */ + assert(!PyErr_Occurred()); + if ((PY_VERSION_HEX < 0x030700A0) || unlikely(flags & METH_KEYWORDS)) { + return (*((__Pyx_PyCFunctionFastWithKeywords)(void*)meth)) (self, args, nargs, NULL); + } else { + return (*((__Pyx_PyCFunctionFast)(void*)meth)) (self, args, nargs); + } +} +#endif + +/* PyObjectCall */ + #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) { PyObject *result; ternaryfunc call = func->ob_type->tp_call; @@ -25742,10 +34907,10 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg } #endif -static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb) { -#if CYTHON_COMPILING_IN_CPYTHON +/* PyErrFetchRestore */ + #if CYTHON_FAST_THREAD_STATE +static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { PyObject *tmp_type, *tmp_value, *tmp_tb; - PyThreadState *tstate = PyThreadState_GET(); tmp_type = tstate->curexc_type; tmp_value = tstate->curexc_value; tmp_tb = tstate->curexc_traceback; @@ -25755,27 +34920,22 @@ static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyOb Py_XDECREF(tmp_type); Py_XDECREF(tmp_value); Py_XDECREF(tmp_tb); -#else - PyErr_Restore(type, value, tb); -#endif } -static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb) { -#if CYTHON_COMPILING_IN_CPYTHON - PyThreadState *tstate = PyThreadState_GET(); +static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { *type = tstate->curexc_type; *value = tstate->curexc_value; *tb = tstate->curexc_traceback; tstate->curexc_type = 0; tstate->curexc_value = 0; tstate->curexc_traceback = 0; -#else - PyErr_Fetch(type, value, tb); -#endif } +#endif -#if PY_MAJOR_VERSION < 3 +/* RaiseException */ + #if PY_MAJOR_VERSION < 3 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, CYTHON_UNUSED PyObject *cause) { + __Pyx_PyThreadState_declare Py_XINCREF(type); if (!value || value == Py_None) value = NULL; @@ -25814,6 +34974,7 @@ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, goto raise_error; } } + __Pyx_PyThreadState_assign __Pyx_ErrRestore(type, value, tb); return; raise_error: @@ -25847,10 +35008,13 @@ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject if (value && PyExceptionInstance_Check(value)) { instance_class = (PyObject*) Py_TYPE(value); if (instance_class != type) { - if (PyObject_IsSubclass(instance_class, type)) { - type = instance_class; - } else { + int is_subclass = PyObject_IsSubclass(instance_class, type); + if (!is_subclass) { instance_class = NULL; + } else if (unlikely(is_subclass == -1)) { + goto bad; + } else { + type = instance_class; } } } @@ -25883,11 +35047,7 @@ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject "raise: exception class must be a subclass of BaseException"); goto bad; } -#if PY_VERSION_HEX >= 0x03030000 if (cause) { -#else - if (cause && cause != Py_None) { -#endif PyObject *fixed_cause; if (cause == Py_None) { fixed_cause = NULL; @@ -25910,12 +35070,12 @@ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject if (tb) { #if CYTHON_COMPILING_IN_PYPY PyObject *tmp_type, *tmp_value, *tmp_tb; - PyErr_Fetch(tmp_type, tmp_value, tmp_tb); + PyErr_Fetch(&tmp_type, &tmp_value, &tmp_tb); Py_INCREF(tb); PyErr_Restore(tmp_type, tmp_value, tb); Py_XDECREF(tmp_tb); #else - PyThreadState *tstate = PyThreadState_GET(); + PyThreadState *tstate = __Pyx_PyThreadState_Current; PyObject* tmp_tb = tstate->curexc_traceback; if (tb != tmp_tb) { Py_INCREF(tb); @@ -25930,7 +35090,8 @@ bad: } #endif -static void __Pyx_RaiseArgtupleInvalid( +/* RaiseArgTupleInvalid */ + static void __Pyx_RaiseArgtupleInvalid( const char* func_name, int exact, Py_ssize_t num_min, @@ -25955,7 +35116,8 @@ static void __Pyx_RaiseArgtupleInvalid( (num_expected == 1) ? "" : "s", num_found); } -static void __Pyx_RaiseDoubleKeywordsError( +/* RaiseDoubleKeywords */ + static void __Pyx_RaiseDoubleKeywordsError( const char* func_name, PyObject* kw_name) { @@ -25968,7 +35130,8 @@ static void __Pyx_RaiseDoubleKeywordsError( #endif } -static int __Pyx_ParseOptionalKeywords( +/* ParseKeywords */ + static int __Pyx_ParseOptionalKeywords( PyObject *kwds, PyObject **argnames[], PyObject *kwds2, @@ -26069,33 +35232,58 @@ bad: return -1; } -static void __Pyx_RaiseArgumentTypeInvalid(const char* name, PyObject *obj, PyTypeObject *type) { - PyErr_Format(PyExc_TypeError, - "Argument '%.200s' has incorrect type (expected %.200s, got %.200s)", - name, type->tp_name, Py_TYPE(obj)->tp_name); -} -static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed, - const char *name, int exact) +/* ArgTypeTest */ + static int __Pyx__ArgTypeTest(PyObject *obj, PyTypeObject *type, const char *name, int exact) { if (unlikely(!type)) { PyErr_SetString(PyExc_SystemError, "Missing type object"); return 0; } - if (none_allowed && obj == Py_None) return 1; else if (exact) { - if (likely(Py_TYPE(obj) == type)) return 1; #if PY_MAJOR_VERSION == 2 - else if ((type == &PyBaseString_Type) && likely(__Pyx_PyBaseString_CheckExact(obj))) return 1; + if ((type == &PyBaseString_Type) && likely(__Pyx_PyBaseString_CheckExact(obj))) return 1; #endif } else { - if (likely(PyObject_TypeCheck(obj, type))) return 1; + if (likely(__Pyx_TypeCheck(obj, type))) return 1; } - __Pyx_RaiseArgumentTypeInvalid(name, obj, type); + PyErr_Format(PyExc_TypeError, + "Argument '%.200s' has incorrect type (expected %.200s, got %.200s)", + name, type->tp_name, Py_TYPE(obj)->tp_name); return 0; } -#if CYTHON_COMPILING_IN_CPYTHON +/* PyObjectCall2Args */ + static CYTHON_UNUSED PyObject* __Pyx_PyObject_Call2Args(PyObject* function, PyObject* arg1, PyObject* arg2) { + PyObject *args, *result = NULL; + #if CYTHON_FAST_PYCALL + if (PyFunction_Check(function)) { + PyObject *args[2] = {arg1, arg2}; + return __Pyx_PyFunction_FastCall(function, args, 2); + } + #endif + #if CYTHON_FAST_PYCCALL + if (__Pyx_PyFastCFunction_Check(function)) { + PyObject *args[2] = {arg1, arg2}; + return __Pyx_PyCFunction_FastCall(function, args, 2); + } + #endif + args = PyTuple_New(2); + if (unlikely(!args)) goto done; + Py_INCREF(arg1); + PyTuple_SET_ITEM(args, 0, arg1); + Py_INCREF(arg2); + PyTuple_SET_ITEM(args, 1, arg2); + Py_INCREF(function); + result = __Pyx_PyObject_Call(function, args, NULL); + Py_DECREF(args); + Py_DECREF(function); +done: + return result; +} + +/* PyObjectCallMethO */ + #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg) { PyObject *self, *result; PyCFunction cfunc; @@ -26114,7 +35302,8 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject } #endif -#if CYTHON_COMPILING_IN_CPYTHON +/* PyObjectCallOneArg */ + #if CYTHON_COMPILING_IN_CPYTHON static PyObject* __Pyx__PyObject_CallOneArg(PyObject *func, PyObject *arg) { PyObject *result; PyObject *args = PyTuple_New(1); @@ -26126,75 +35315,276 @@ static PyObject* __Pyx__PyObject_CallOneArg(PyObject *func, PyObject *arg) { return result; } static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) { -#ifdef __Pyx_CyFunction_USED - if (likely(PyCFunction_Check(func) || PyObject_TypeCheck(func, __pyx_CyFunctionType))) { -#else - if (likely(PyCFunction_Check(func))) { +#if CYTHON_FAST_PYCALL + if (PyFunction_Check(func)) { + return __Pyx_PyFunction_FastCall(func, &arg, 1); + } #endif + if (likely(PyCFunction_Check(func))) { if (likely(PyCFunction_GET_FLAGS(func) & METH_O)) { return __Pyx_PyObject_CallMethO(func, arg); +#if CYTHON_FAST_PYCCALL + } else if (PyCFunction_GET_FLAGS(func) & METH_FASTCALL) { + return __Pyx_PyCFunction_FastCall(func, &arg, 1); +#endif } } return __Pyx__PyObject_CallOneArg(func, arg); } #else static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) { - PyObject* args = PyTuple_Pack(1, arg); - return (likely(args)) ? __Pyx_PyObject_Call(func, args, NULL) : NULL; -} -#endif - -static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name) { PyObject *result; -#if CYTHON_COMPILING_IN_CPYTHON - result = PyDict_GetItem(__pyx_d, name); - if (likely(result)) { - Py_INCREF(result); - } else { -#else - result = PyObject_GetItem(__pyx_d, name); - if (!result) { - PyErr_Clear(); -#endif - result = __Pyx_GetBuiltinName(name); - } + PyObject *args = PyTuple_Pack(1, arg); + if (unlikely(!args)) return NULL; + result = __Pyx_PyObject_Call(func, args, NULL); + Py_DECREF(args); return result; } +#endif -static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { +/* PyErrExceptionMatches */ + #if CYTHON_FAST_THREAD_STATE +static int __Pyx_PyErr_ExceptionMatchesTuple(PyObject *exc_type, PyObject *tuple) { + Py_ssize_t i, n; + n = PyTuple_GET_SIZE(tuple); +#if PY_MAJOR_VERSION >= 3 + for (i=0; icurexc_type; + if (exc_type == err) return 1; + if (unlikely(!exc_type)) return 0; + if (unlikely(PyTuple_Check(err))) + return __Pyx_PyErr_ExceptionMatchesTuple(exc_type, err); + return __Pyx_PyErr_GivenExceptionMatches(exc_type, err); +} +#endif + +/* GetAttr */ + static CYTHON_INLINE PyObject *__Pyx_GetAttr(PyObject *o, PyObject *n) { +#if CYTHON_USE_TYPE_SLOTS +#if PY_MAJOR_VERSION >= 3 + if (likely(PyUnicode_Check(n))) +#else + if (likely(PyString_Check(n))) +#endif + return __Pyx_PyObject_GetAttrStr(o, n); +#endif + return PyObject_GetAttr(o, n); +} + +/* GetAttr3 */ + static PyObject *__Pyx_GetAttr3Default(PyObject *d) { + __Pyx_PyThreadState_declare + __Pyx_PyThreadState_assign + if (unlikely(!__Pyx_PyErr_ExceptionMatches(PyExc_AttributeError))) + return NULL; + __Pyx_PyErr_Clear(); + Py_INCREF(d); + return d; +} +static CYTHON_INLINE PyObject *__Pyx_GetAttr3(PyObject *o, PyObject *n, PyObject *d) { + PyObject *r = __Pyx_GetAttr(o, n); + return (likely(r)) ? r : __Pyx_GetAttr3Default(d); +} + +/* GetModuleGlobalName */ + #if CYTHON_USE_DICT_VERSIONS +static PyObject *__Pyx__GetModuleGlobalName(PyObject *name, PY_UINT64_T *dict_version, PyObject **dict_cached_value) +#else +static CYTHON_INLINE PyObject *__Pyx__GetModuleGlobalName(PyObject *name) +#endif +{ + PyObject *result; +#if !CYTHON_AVOID_BORROWED_REFS +#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1 + result = _PyDict_GetItem_KnownHash(__pyx_d, name, ((PyASCIIObject *) name)->hash); + __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version) + if (likely(result)) { + return __Pyx_NewRef(result); + } else if (unlikely(PyErr_Occurred())) { + return NULL; + } +#else + result = PyDict_GetItem(__pyx_d, name); + __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version) + if (likely(result)) { + return __Pyx_NewRef(result); + } +#endif +#else + result = PyObject_GetItem(__pyx_d, name); + __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version) + if (likely(result)) { + return __Pyx_NewRef(result); + } + PyErr_Clear(); +#endif + return __Pyx_GetBuiltinName(name); +} + +/* GetItemInt */ + static PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) { + PyObject *r; + if (!j) return NULL; + r = PyObject_GetItem(o, j); + Py_DECREF(j); + return r; +} +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, + CYTHON_NCP_UNUSED int wraparound, + CYTHON_NCP_UNUSED int boundscheck) { +#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS + Py_ssize_t wrapped_i = i; + if (wraparound & unlikely(i < 0)) { + wrapped_i += PyList_GET_SIZE(o); + } + if ((!boundscheck) || likely(__Pyx_is_valid_index(wrapped_i, PyList_GET_SIZE(o)))) { + PyObject *r = PyList_GET_ITEM(o, wrapped_i); + Py_INCREF(r); + return r; + } + return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); +#else + return PySequence_GetItem(o, i); +#endif +} +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, + CYTHON_NCP_UNUSED int wraparound, + CYTHON_NCP_UNUSED int boundscheck) { +#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS + Py_ssize_t wrapped_i = i; + if (wraparound & unlikely(i < 0)) { + wrapped_i += PyTuple_GET_SIZE(o); + } + if ((!boundscheck) || likely(__Pyx_is_valid_index(wrapped_i, PyTuple_GET_SIZE(o)))) { + PyObject *r = PyTuple_GET_ITEM(o, wrapped_i); + Py_INCREF(r); + return r; + } + return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); +#else + return PySequence_GetItem(o, i); +#endif +} +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, int is_list, + CYTHON_NCP_UNUSED int wraparound, + CYTHON_NCP_UNUSED int boundscheck) { +#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS && CYTHON_USE_TYPE_SLOTS + if (is_list || PyList_CheckExact(o)) { + Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyList_GET_SIZE(o); + if ((!boundscheck) || (likely(__Pyx_is_valid_index(n, PyList_GET_SIZE(o))))) { + PyObject *r = PyList_GET_ITEM(o, n); + Py_INCREF(r); + return r; + } + } + else if (PyTuple_CheckExact(o)) { + Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyTuple_GET_SIZE(o); + if ((!boundscheck) || likely(__Pyx_is_valid_index(n, PyTuple_GET_SIZE(o)))) { + PyObject *r = PyTuple_GET_ITEM(o, n); + Py_INCREF(r); + return r; + } + } else { + PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence; + if (likely(m && m->sq_item)) { + if (wraparound && unlikely(i < 0) && likely(m->sq_length)) { + Py_ssize_t l = m->sq_length(o); + if (likely(l >= 0)) { + i += l; + } else { + if (!PyErr_ExceptionMatches(PyExc_OverflowError)) + return NULL; + PyErr_Clear(); + } + } + return m->sq_item(o, i); + } + } +#else + if (is_list || PySequence_Check(o)) { + return PySequence_GetItem(o, i); + } +#endif + return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); +} + +/* ObjectGetItem */ + #if CYTHON_USE_TYPE_SLOTS +static PyObject *__Pyx_PyObject_GetIndex(PyObject *obj, PyObject* index) { + PyObject *runerr; + Py_ssize_t key_value; + PySequenceMethods *m = Py_TYPE(obj)->tp_as_sequence; + if (unlikely(!(m && m->sq_item))) { + PyErr_Format(PyExc_TypeError, "'%.200s' object is not subscriptable", Py_TYPE(obj)->tp_name); + return NULL; + } + key_value = __Pyx_PyIndex_AsSsize_t(index); + if (likely(key_value != -1 || !(runerr = PyErr_Occurred()))) { + return __Pyx_GetItemInt_Fast(obj, key_value, 0, 1, 1); + } + if (PyErr_GivenExceptionMatches(runerr, PyExc_OverflowError)) { + PyErr_Clear(); + PyErr_Format(PyExc_IndexError, "cannot fit '%.200s' into an index-sized integer", Py_TYPE(index)->tp_name); + } + return NULL; +} +static PyObject *__Pyx_PyObject_GetItem(PyObject *obj, PyObject* key) { + PyMappingMethods *m = Py_TYPE(obj)->tp_as_mapping; + if (likely(m && m->mp_subscript)) { + return m->mp_subscript(obj, key); + } + return __Pyx_PyObject_GetIndex(obj, key); +} +#endif + +/* ExtTypeTest */ + static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { if (unlikely(!type)) { PyErr_SetString(PyExc_SystemError, "Missing type object"); return 0; } - if (likely(PyObject_TypeCheck(obj, type))) + if (likely(__Pyx_TypeCheck(obj, type))) return 1; PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s", Py_TYPE(obj)->tp_name, type->tp_name); return 0; } -static void __Pyx_RaiseBufferFallbackError(void) { +/* BufferFallbackError */ + static void __Pyx_RaiseBufferFallbackError(void) { PyErr_SetString(PyExc_ValueError, "Buffer acquisition failed on assignment; and then reacquiring the old buffer failed too!"); } -static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { +/* RaiseTooManyValuesToUnpack */ + static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { PyErr_Format(PyExc_ValueError, "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected); } -static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { +/* RaiseNeedMoreValuesToUnpack */ + static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { PyErr_Format(PyExc_ValueError, "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack", index, (index == 1) ? "" : "s"); } -static CYTHON_INLINE int __Pyx_IterFinish(void) { -#if CYTHON_COMPILING_IN_CPYTHON - PyThreadState *tstate = PyThreadState_GET(); +/* IterFinish */ + static CYTHON_INLINE int __Pyx_IterFinish(void) { +#if CYTHON_FAST_THREAD_STATE + PyThreadState *tstate = __Pyx_PyThreadState_Current; PyObject* exc_type = tstate->curexc_type; if (unlikely(exc_type)) { - if (likely(exc_type == PyExc_StopIteration) || PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration)) { + if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) { PyObject *exc_value, *exc_tb; exc_value = tstate->curexc_value; exc_tb = tstate->curexc_traceback; @@ -26223,7 +35613,8 @@ static CYTHON_INLINE int __Pyx_IterFinish(void) { #endif } -static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) { +/* UnpackItemEndCheck */ + static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) { if (unlikely(retval)) { Py_DECREF(retval); __Pyx_RaiseTooManyValuesError(expected); @@ -26234,89 +35625,398 @@ static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) { return 0; } -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) { - PyObject *r; - if (!j) return NULL; - r = PyObject_GetItem(o, j); +/* DictGetItem */ + #if PY_MAJOR_VERSION >= 3 && !CYTHON_COMPILING_IN_PYPY +static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key) { + PyObject *value; + value = PyDict_GetItemWithError(d, key); + if (unlikely(!value)) { + if (!PyErr_Occurred()) { + if (unlikely(PyTuple_Check(key))) { + PyObject* args = PyTuple_Pack(1, key); + if (likely(args)) { + PyErr_SetObject(PyExc_KeyError, args); + Py_DECREF(args); + } + } else { + PyErr_SetObject(PyExc_KeyError, key); + } + } + return NULL; + } + Py_INCREF(value); + return value; +} +#endif + +/* PyObjectSetAttrStr */ + #if CYTHON_USE_TYPE_SLOTS +static CYTHON_INLINE int __Pyx_PyObject_SetAttrStr(PyObject* obj, PyObject* attr_name, PyObject* value) { + PyTypeObject* tp = Py_TYPE(obj); + if (likely(tp->tp_setattro)) + return tp->tp_setattro(obj, attr_name, value); +#if PY_MAJOR_VERSION < 3 + if (likely(tp->tp_setattr)) + return tp->tp_setattr(obj, PyString_AS_STRING(attr_name), value); +#endif + return PyObject_SetAttr(obj, attr_name, value); +} +#endif + +/* SetItemInt */ + static int __Pyx_SetItemInt_Generic(PyObject *o, PyObject *j, PyObject *v) { + int r; + if (!j) return -1; + r = PyObject_SetItem(o, j, v); Py_DECREF(j); return r; } -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, - int wraparound, int boundscheck) { -#if CYTHON_COMPILING_IN_CPYTHON - if (wraparound & unlikely(i < 0)) i += PyList_GET_SIZE(o); - if ((!boundscheck) || likely((0 <= i) & (i < PyList_GET_SIZE(o)))) { - PyObject *r = PyList_GET_ITEM(o, i); - Py_INCREF(r); - return r; - } - return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); -#else - return PySequence_GetItem(o, i); -#endif -} -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, - int wraparound, int boundscheck) { -#if CYTHON_COMPILING_IN_CPYTHON - if (wraparound & unlikely(i < 0)) i += PyTuple_GET_SIZE(o); - if ((!boundscheck) || likely((0 <= i) & (i < PyTuple_GET_SIZE(o)))) { - PyObject *r = PyTuple_GET_ITEM(o, i); - Py_INCREF(r); - return r; - } - return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); -#else - return PySequence_GetItem(o, i); -#endif -} -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, - int is_list, int wraparound, int boundscheck) { -#if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE int __Pyx_SetItemInt_Fast(PyObject *o, Py_ssize_t i, PyObject *v, int is_list, + CYTHON_NCP_UNUSED int wraparound, CYTHON_NCP_UNUSED int boundscheck) { +#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS && CYTHON_USE_TYPE_SLOTS if (is_list || PyList_CheckExact(o)) { - Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyList_GET_SIZE(o); - if ((!boundscheck) || (likely((n >= 0) & (n < PyList_GET_SIZE(o))))) { - PyObject *r = PyList_GET_ITEM(o, n); - Py_INCREF(r); - return r; - } - } - else if (PyTuple_CheckExact(o)) { - Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyTuple_GET_SIZE(o); - if ((!boundscheck) || likely((n >= 0) & (n < PyTuple_GET_SIZE(o)))) { - PyObject *r = PyTuple_GET_ITEM(o, n); - Py_INCREF(r); - return r; + Py_ssize_t n = (!wraparound) ? i : ((likely(i >= 0)) ? i : i + PyList_GET_SIZE(o)); + if ((!boundscheck) || likely(__Pyx_is_valid_index(n, PyList_GET_SIZE(o)))) { + PyObject* old = PyList_GET_ITEM(o, n); + Py_INCREF(v); + PyList_SET_ITEM(o, n, v); + Py_DECREF(old); + return 1; } } else { PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence; - if (likely(m && m->sq_item)) { + if (likely(m && m->sq_ass_item)) { if (wraparound && unlikely(i < 0) && likely(m->sq_length)) { Py_ssize_t l = m->sq_length(o); if (likely(l >= 0)) { i += l; } else { - if (PyErr_ExceptionMatches(PyExc_OverflowError)) - PyErr_Clear(); - else - return NULL; + if (!PyErr_ExceptionMatches(PyExc_OverflowError)) + return -1; + PyErr_Clear(); } } - return m->sq_item(o, i); + return m->sq_ass_item(o, i, v); } } #else - if (is_list || PySequence_Check(o)) { - return PySequence_GetItem(o, i); +#if CYTHON_COMPILING_IN_PYPY + if (is_list || (PySequence_Check(o) && !PyDict_Check(o))) +#else + if (is_list || PySequence_Check(o)) +#endif + { + return PySequence_SetItem(o, i, v); } #endif - return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); + return __Pyx_SetItemInt_Generic(o, PyInt_FromSsize_t(i), v); } -static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { +/* PyFloatBinop */ + #if !CYTHON_COMPILING_IN_PYPY +static PyObject* __Pyx_PyFloat_DivideCObj(PyObject *op1, PyObject *op2, double floatval, CYTHON_UNUSED int inplace) { + const double a = floatval; + double b, result; + if (likely(PyFloat_CheckExact(op2))) { + b = PyFloat_AS_DOUBLE(op2); + } else + #if PY_MAJOR_VERSION < 3 + if (likely(PyInt_CheckExact(op2))) { + b = (double) PyInt_AS_LONG(op2); + } else + #endif + if (likely(PyLong_CheckExact(op2))) { + #if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)op2)->ob_digit; + const Py_ssize_t size = Py_SIZE(op2); + switch (size) { + case 0: b = 0.0; break; + case -1: b = -(double) digits[0]; break; + case 1: b = (double) digits[0]; break; + case -2: + case 2: + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT && ((8 * sizeof(unsigned long) < 53) || (1 * PyLong_SHIFT < 53))) { + b = (double) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + if ((8 * sizeof(unsigned long) < 53) || (2 * PyLong_SHIFT < 53) || (b < (double) ((PY_LONG_LONG)1 << 53))) { + if (size == -2) + b = -b; + break; + } + } + CYTHON_FALLTHROUGH; + case -3: + case 3: + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT && ((8 * sizeof(unsigned long) < 53) || (2 * PyLong_SHIFT < 53))) { + b = (double) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + if ((8 * sizeof(unsigned long) < 53) || (3 * PyLong_SHIFT < 53) || (b < (double) ((PY_LONG_LONG)1 << 53))) { + if (size == -3) + b = -b; + break; + } + } + CYTHON_FALLTHROUGH; + case -4: + case 4: + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT && ((8 * sizeof(unsigned long) < 53) || (3 * PyLong_SHIFT < 53))) { + b = (double) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + if ((8 * sizeof(unsigned long) < 53) || (4 * PyLong_SHIFT < 53) || (b < (double) ((PY_LONG_LONG)1 << 53))) { + if (size == -4) + b = -b; + break; + } + } + CYTHON_FALLTHROUGH; + default: + #else + { + #endif + b = PyLong_AsDouble(op2); + if (unlikely(b == -1.0 && PyErr_Occurred())) return NULL; + } + } else { + return (inplace ? __Pyx_PyNumber_InPlaceDivide(op1, op2) : __Pyx_PyNumber_Divide(op1, op2)); + } + PyFPE_START_PROTECT("divide", return NULL) + result = a / b; + PyFPE_END_PROTECT(result) + return PyFloat_FromDouble(result); +} +#endif + +/* Import */ + static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { + PyObject *empty_list = 0; + PyObject *module = 0; + PyObject *global_dict = 0; + PyObject *empty_dict = 0; + PyObject *list; + #if PY_MAJOR_VERSION < 3 + PyObject *py_import; + py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import); + if (!py_import) + goto bad; + #endif + if (from_list) + list = from_list; + else { + empty_list = PyList_New(0); + if (!empty_list) + goto bad; + list = empty_list; + } + global_dict = PyModule_GetDict(__pyx_m); + if (!global_dict) + goto bad; + empty_dict = PyDict_New(); + if (!empty_dict) + goto bad; + { + #if PY_MAJOR_VERSION >= 3 + if (level == -1) { + if (strchr(__Pyx_MODULE_NAME, '.')) { + module = PyImport_ImportModuleLevelObject( + name, global_dict, empty_dict, list, 1); + if (!module) { + if (!PyErr_ExceptionMatches(PyExc_ImportError)) + goto bad; + PyErr_Clear(); + } + } + level = 0; + } + #endif + if (!module) { + #if PY_MAJOR_VERSION < 3 + PyObject *py_level = PyInt_FromLong(level); + if (!py_level) + goto bad; + module = PyObject_CallFunctionObjArgs(py_import, + name, global_dict, empty_dict, list, py_level, (PyObject *)NULL); + Py_DECREF(py_level); + #else + module = PyImport_ImportModuleLevelObject( + name, global_dict, empty_dict, list, level); + #endif + } + } +bad: + #if PY_MAJOR_VERSION < 3 + Py_XDECREF(py_import); + #endif + Py_XDECREF(empty_list); + Py_XDECREF(empty_dict); + return module; +} + +/* ImportFrom */ + static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) { + PyObject* value = __Pyx_PyObject_GetAttrStr(module, name); + if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) { + PyErr_Format(PyExc_ImportError, + #if PY_MAJOR_VERSION < 3 + "cannot import name %.230s", PyString_AS_STRING(name)); + #else + "cannot import name %S", name); + #endif + } + return value; +} + +/* HasAttr */ + static CYTHON_INLINE int __Pyx_HasAttr(PyObject *o, PyObject *n) { + PyObject *r; + if (unlikely(!__Pyx_PyBaseString_Check(n))) { + PyErr_SetString(PyExc_TypeError, + "hasattr(): attribute name must be string"); + return -1; + } + r = __Pyx_GetAttr(o, n); + if (unlikely(!r)) { + PyErr_Clear(); + return 0; + } else { + Py_DECREF(r); + return 1; + } +} + +/* RaiseNoneIterError */ + static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); } -static int __Pyx_call_next_tp_traverse(PyObject* obj, visitproc v, void *a, traverseproc current_tp_traverse) { +/* GetTopmostException */ + #if CYTHON_USE_EXC_INFO_STACK +static _PyErr_StackItem * +__Pyx_PyErr_GetTopmostException(PyThreadState *tstate) +{ + _PyErr_StackItem *exc_info = tstate->exc_info; + while ((exc_info->exc_type == NULL || exc_info->exc_type == Py_None) && + exc_info->previous_item != NULL) + { + exc_info = exc_info->previous_item; + } + return exc_info; +} +#endif + +/* SaveResetException */ + #if CYTHON_FAST_THREAD_STATE +static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { + #if CYTHON_USE_EXC_INFO_STACK + _PyErr_StackItem *exc_info = __Pyx_PyErr_GetTopmostException(tstate); + *type = exc_info->exc_type; + *value = exc_info->exc_value; + *tb = exc_info->exc_traceback; + #else + *type = tstate->exc_type; + *value = tstate->exc_value; + *tb = tstate->exc_traceback; + #endif + Py_XINCREF(*type); + Py_XINCREF(*value); + Py_XINCREF(*tb); +} +static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { + PyObject *tmp_type, *tmp_value, *tmp_tb; + #if CYTHON_USE_EXC_INFO_STACK + _PyErr_StackItem *exc_info = tstate->exc_info; + tmp_type = exc_info->exc_type; + tmp_value = exc_info->exc_value; + tmp_tb = exc_info->exc_traceback; + exc_info->exc_type = type; + exc_info->exc_value = value; + exc_info->exc_traceback = tb; + #else + tmp_type = tstate->exc_type; + tmp_value = tstate->exc_value; + tmp_tb = tstate->exc_traceback; + tstate->exc_type = type; + tstate->exc_value = value; + tstate->exc_traceback = tb; + #endif + Py_XDECREF(tmp_type); + Py_XDECREF(tmp_value); + Py_XDECREF(tmp_tb); +} +#endif + +/* GetException */ + #if CYTHON_FAST_THREAD_STATE +static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) +#else +static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) +#endif +{ + PyObject *local_type, *local_value, *local_tb; +#if CYTHON_FAST_THREAD_STATE + PyObject *tmp_type, *tmp_value, *tmp_tb; + local_type = tstate->curexc_type; + local_value = tstate->curexc_value; + local_tb = tstate->curexc_traceback; + tstate->curexc_type = 0; + tstate->curexc_value = 0; + tstate->curexc_traceback = 0; +#else + PyErr_Fetch(&local_type, &local_value, &local_tb); +#endif + PyErr_NormalizeException(&local_type, &local_value, &local_tb); +#if CYTHON_FAST_THREAD_STATE + if (unlikely(tstate->curexc_type)) +#else + if (unlikely(PyErr_Occurred())) +#endif + goto bad; + #if PY_MAJOR_VERSION >= 3 + if (local_tb) { + if (unlikely(PyException_SetTraceback(local_value, local_tb) < 0)) + goto bad; + } + #endif + Py_XINCREF(local_tb); + Py_XINCREF(local_type); + Py_XINCREF(local_value); + *type = local_type; + *value = local_value; + *tb = local_tb; +#if CYTHON_FAST_THREAD_STATE + #if CYTHON_USE_EXC_INFO_STACK + { + _PyErr_StackItem *exc_info = tstate->exc_info; + tmp_type = exc_info->exc_type; + tmp_value = exc_info->exc_value; + tmp_tb = exc_info->exc_traceback; + exc_info->exc_type = local_type; + exc_info->exc_value = local_value; + exc_info->exc_traceback = local_tb; + } + #else + tmp_type = tstate->exc_type; + tmp_value = tstate->exc_value; + tmp_tb = tstate->exc_traceback; + tstate->exc_type = local_type; + tstate->exc_value = local_value; + tstate->exc_traceback = local_tb; + #endif + Py_XDECREF(tmp_type); + Py_XDECREF(tmp_value); + Py_XDECREF(tmp_tb); +#else + PyErr_SetExcInfo(local_type, local_value, local_tb); +#endif + return 0; +bad: + *type = 0; + *value = 0; + *tb = 0; + Py_XDECREF(local_type); + Py_XDECREF(local_value); + Py_XDECREF(local_tb); + return -1; +} + +/* CallNextTpTraverse */ + static int __Pyx_call_next_tp_traverse(PyObject* obj, visitproc v, void *a, traverseproc current_tp_traverse) { PyTypeObject* type = Py_TYPE(obj); while (type && type->tp_traverse != current_tp_traverse) type = type->tp_base; @@ -26327,7 +36027,8 @@ static int __Pyx_call_next_tp_traverse(PyObject* obj, visitproc v, void *a, trav return 0; } -static void __Pyx_call_next_tp_clear(PyObject* obj, inquiry current_tp_clear) { +/* CallNextTpClear */ + static void __Pyx_call_next_tp_clear(PyObject* obj, inquiry current_tp_clear) { PyTypeObject* type = Py_TYPE(obj); while (type && type->tp_clear != current_tp_clear) type = type->tp_base; @@ -26337,7 +36038,58 @@ static void __Pyx_call_next_tp_clear(PyObject* obj, inquiry current_tp_clear) { type->tp_clear(obj); } -static int __Pyx_SetVtable(PyObject *dict, void *vtable) { +/* PyObject_GenericGetAttrNoDict */ + #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000 +static PyObject *__Pyx_RaiseGenericGetAttributeError(PyTypeObject *tp, PyObject *attr_name) { + PyErr_Format(PyExc_AttributeError, +#if PY_MAJOR_VERSION >= 3 + "'%.50s' object has no attribute '%U'", + tp->tp_name, attr_name); +#else + "'%.50s' object has no attribute '%.400s'", + tp->tp_name, PyString_AS_STRING(attr_name)); +#endif + return NULL; +} +static CYTHON_INLINE PyObject* __Pyx_PyObject_GenericGetAttrNoDict(PyObject* obj, PyObject* attr_name) { + PyObject *descr; + PyTypeObject *tp = Py_TYPE(obj); + if (unlikely(!PyString_Check(attr_name))) { + return PyObject_GenericGetAttr(obj, attr_name); + } + assert(!tp->tp_dictoffset); + descr = _PyType_Lookup(tp, attr_name); + if (unlikely(!descr)) { + return __Pyx_RaiseGenericGetAttributeError(tp, attr_name); + } + Py_INCREF(descr); + #if PY_MAJOR_VERSION < 3 + if (likely(PyType_HasFeature(Py_TYPE(descr), Py_TPFLAGS_HAVE_CLASS))) + #endif + { + descrgetfunc f = Py_TYPE(descr)->tp_descr_get; + if (unlikely(f)) { + PyObject *res = f(descr, obj, (PyObject *)tp); + Py_DECREF(descr); + return res; + } + } + return descr; +} +#endif + +/* PyObject_GenericGetAttr */ + #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000 +static PyObject* __Pyx_PyObject_GenericGetAttr(PyObject* obj, PyObject* attr_name) { + if (unlikely(Py_TYPE(obj)->tp_dictoffset)) { + return PyObject_GenericGetAttr(obj, attr_name); + } + return __Pyx_PyObject_GenericGetAttrNoDict(obj, attr_name); +} +#endif + +/* SetVTable */ + static int __Pyx_SetVtable(PyObject *dict, void *vtable) { #if PY_VERSION_HEX >= 0x02070000 PyObject *ob = PyCapsule_New(vtable, 0, 0); #else @@ -26354,13 +36106,193 @@ bad: return -1; } -static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { +/* SetupReduce */ + static int __Pyx_setup_reduce_is_named(PyObject* meth, PyObject* name) { + int ret; + PyObject *name_attr; + name_attr = __Pyx_PyObject_GetAttrStr(meth, __pyx_n_s_name); + if (likely(name_attr)) { + ret = PyObject_RichCompareBool(name_attr, name, Py_EQ); + } else { + ret = -1; + } + if (unlikely(ret < 0)) { + PyErr_Clear(); + ret = 0; + } + Py_XDECREF(name_attr); + return ret; +} +static int __Pyx_setup_reduce(PyObject* type_obj) { + int ret = 0; + PyObject *object_reduce = NULL; + PyObject *object_reduce_ex = NULL; + PyObject *reduce = NULL; + PyObject *reduce_ex = NULL; + PyObject *reduce_cython = NULL; + PyObject *setstate = NULL; + PyObject *setstate_cython = NULL; +#if CYTHON_USE_PYTYPE_LOOKUP + if (_PyType_Lookup((PyTypeObject*)type_obj, __pyx_n_s_getstate)) goto GOOD; +#else + if (PyObject_HasAttr(type_obj, __pyx_n_s_getstate)) goto GOOD; +#endif +#if CYTHON_USE_PYTYPE_LOOKUP + object_reduce_ex = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_reduce_ex); if (!object_reduce_ex) goto BAD; +#else + object_reduce_ex = __Pyx_PyObject_GetAttrStr((PyObject*)&PyBaseObject_Type, __pyx_n_s_reduce_ex); if (!object_reduce_ex) goto BAD; +#endif + reduce_ex = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce_ex); if (unlikely(!reduce_ex)) goto BAD; + if (reduce_ex == object_reduce_ex) { +#if CYTHON_USE_PYTYPE_LOOKUP + object_reduce = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_reduce); if (!object_reduce) goto BAD; +#else + object_reduce = __Pyx_PyObject_GetAttrStr((PyObject*)&PyBaseObject_Type, __pyx_n_s_reduce); if (!object_reduce) goto BAD; +#endif + reduce = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce); if (unlikely(!reduce)) goto BAD; + if (reduce == object_reduce || __Pyx_setup_reduce_is_named(reduce, __pyx_n_s_reduce_cython)) { + reduce_cython = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce_cython); if (unlikely(!reduce_cython)) goto BAD; + ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce, reduce_cython); if (unlikely(ret < 0)) goto BAD; + ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce_cython); if (unlikely(ret < 0)) goto BAD; + setstate = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_setstate); + if (!setstate) PyErr_Clear(); + if (!setstate || __Pyx_setup_reduce_is_named(setstate, __pyx_n_s_setstate_cython)) { + setstate_cython = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_setstate_cython); if (unlikely(!setstate_cython)) goto BAD; + ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate, setstate_cython); if (unlikely(ret < 0)) goto BAD; + ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate_cython); if (unlikely(ret < 0)) goto BAD; + } + PyType_Modified((PyTypeObject*)type_obj); + } + } + goto GOOD; +BAD: + if (!PyErr_Occurred()) + PyErr_Format(PyExc_RuntimeError, "Unable to initialize pickling for %s", ((PyTypeObject*)type_obj)->tp_name); + ret = -1; +GOOD: +#if !CYTHON_USE_PYTYPE_LOOKUP + Py_XDECREF(object_reduce); + Py_XDECREF(object_reduce_ex); +#endif + Py_XDECREF(reduce); + Py_XDECREF(reduce_ex); + Py_XDECREF(reduce_cython); + Py_XDECREF(setstate); + Py_XDECREF(setstate_cython); + return ret; +} + +/* TypeImport */ + #ifndef __PYX_HAVE_RT_ImportType +#define __PYX_HAVE_RT_ImportType +static PyTypeObject *__Pyx_ImportType(PyObject *module, const char *module_name, const char *class_name, + size_t size, enum __Pyx_ImportType_CheckSize check_size) +{ + PyObject *result = 0; + char warning[200]; + Py_ssize_t basicsize; +#ifdef Py_LIMITED_API + PyObject *py_basicsize; +#endif + result = PyObject_GetAttrString(module, class_name); + if (!result) + goto bad; + if (!PyType_Check(result)) { + PyErr_Format(PyExc_TypeError, + "%.200s.%.200s is not a type object", + module_name, class_name); + goto bad; + } +#ifndef Py_LIMITED_API + basicsize = ((PyTypeObject *)result)->tp_basicsize; +#else + py_basicsize = PyObject_GetAttrString(result, "__basicsize__"); + if (!py_basicsize) + goto bad; + basicsize = PyLong_AsSsize_t(py_basicsize); + Py_DECREF(py_basicsize); + py_basicsize = 0; + if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred()) + goto bad; +#endif + if ((size_t)basicsize < size) { + PyErr_Format(PyExc_ValueError, + "%.200s.%.200s size changed, may indicate binary incompatibility. " + "Expected %zd from C header, got %zd from PyObject", + module_name, class_name, size, basicsize); + goto bad; + } + if (check_size == __Pyx_ImportType_CheckSize_Error && (size_t)basicsize != size) { + PyErr_Format(PyExc_ValueError, + "%.200s.%.200s size changed, may indicate binary incompatibility. " + "Expected %zd from C header, got %zd from PyObject", + module_name, class_name, size, basicsize); + goto bad; + } + else if (check_size == __Pyx_ImportType_CheckSize_Warn && (size_t)basicsize > size) { + PyOS_snprintf(warning, sizeof(warning), + "%s.%s size changed, may indicate binary incompatibility. " + "Expected %zd from C header, got %zd from PyObject", + module_name, class_name, size, basicsize); + if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad; + } + return (PyTypeObject *)result; +bad: + Py_XDECREF(result); + return NULL; +} +#endif + +/* CLineInTraceback */ + #ifndef CYTHON_CLINE_IN_TRACEBACK +static int __Pyx_CLineForTraceback(PyThreadState *tstate, int c_line) { + PyObject *use_cline; + PyObject *ptype, *pvalue, *ptraceback; +#if CYTHON_COMPILING_IN_CPYTHON + PyObject **cython_runtime_dict; +#endif + if (unlikely(!__pyx_cython_runtime)) { + return c_line; + } + __Pyx_ErrFetchInState(tstate, &ptype, &pvalue, &ptraceback); +#if CYTHON_COMPILING_IN_CPYTHON + cython_runtime_dict = _PyObject_GetDictPtr(__pyx_cython_runtime); + if (likely(cython_runtime_dict)) { + __PYX_PY_DICT_LOOKUP_IF_MODIFIED( + use_cline, *cython_runtime_dict, + __Pyx_PyDict_GetItemStr(*cython_runtime_dict, __pyx_n_s_cline_in_traceback)) + } else +#endif + { + PyObject *use_cline_obj = __Pyx_PyObject_GetAttrStr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback); + if (use_cline_obj) { + use_cline = PyObject_Not(use_cline_obj) ? Py_False : Py_True; + Py_DECREF(use_cline_obj); + } else { + PyErr_Clear(); + use_cline = NULL; + } + } + if (!use_cline) { + c_line = 0; + PyObject_SetAttr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback, Py_False); + } + else if (use_cline == Py_False || (use_cline != Py_True && PyObject_Not(use_cline) != 0)) { + c_line = 0; + } + __Pyx_ErrRestoreInState(tstate, ptype, pvalue, ptraceback); + return c_line; +} +#endif + +/* CodeObjectCache */ + static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { int start = 0, mid = 0, end = count - 1; if (end >= 0 && code_line > entries[end].code_line) { return count; } while (start < end) { - mid = (start + end) / 2; + mid = start + (end - start) / 2; if (code_line < entries[mid].code_line) { end = mid; } else if (code_line > entries[mid].code_line) { @@ -26433,7 +36365,8 @@ static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { Py_INCREF(code_object); } -#include "compile.h" +/* AddTraceback */ + #include "compile.h" #include "frameobject.h" #include "traceback.h" static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( @@ -26492,31 +36425,88 @@ static void __Pyx_AddTraceback(const char *funcname, int c_line, int py_line, const char *filename) { PyCodeObject *py_code = 0; PyFrameObject *py_frame = 0; - py_code = __pyx_find_code_object(c_line ? c_line : py_line); + PyThreadState *tstate = __Pyx_PyThreadState_Current; + if (c_line) { + c_line = __Pyx_CLineForTraceback(tstate, c_line); + } + py_code = __pyx_find_code_object(c_line ? -c_line : py_line); if (!py_code) { py_code = __Pyx_CreateCodeObjectForTraceback( funcname, c_line, py_line, filename); if (!py_code) goto bad; - __pyx_insert_code_object(c_line ? c_line : py_line, py_code); + __pyx_insert_code_object(c_line ? -c_line : py_line, py_code); } py_frame = PyFrame_New( - PyThreadState_GET(), /*PyThreadState *tstate,*/ - py_code, /*PyCodeObject *code,*/ - __pyx_d, /*PyObject *globals,*/ - 0 /*PyObject *locals*/ + tstate, /*PyThreadState *tstate,*/ + py_code, /*PyCodeObject *code,*/ + __pyx_d, /*PyObject *globals,*/ + 0 /*PyObject *locals*/ ); if (!py_frame) goto bad; - py_frame->f_lineno = py_line; + __Pyx_PyFrame_SetLineNumber(py_frame, py_line); PyTraceBack_Here(py_frame); bad: Py_XDECREF(py_code); Py_XDECREF(py_frame); } +/* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { + const int neg_one = (int) ((int) 0 - (int) 1), const_zero = (int) 0; + const int is_unsigned = neg_one > const_zero; + if (is_unsigned) { + if (sizeof(int) < sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(int) <= sizeof(unsigned long)) { + return PyLong_FromUnsignedLong((unsigned long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) { + return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); +#endif + } + } else { + if (sizeof(int) <= sizeof(long)) { + return PyInt_FromLong((long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) { + return PyLong_FromLongLong((PY_LONG_LONG) value); +#endif + } + } + { + int one = 1; int little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&value; + return _PyLong_FromByteArray(bytes, sizeof(int), + little, !is_unsigned); + } +} + +/* CIntFromPyVerify */ + #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ + __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0) +#define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\ + __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1) +#define __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, exc)\ + {\ + func_type value = func_value;\ + if (sizeof(target_type) < sizeof(func_type)) {\ + if (unlikely(value != (func_type) (target_type) value)) {\ + func_type zero = 0;\ + if (exc && unlikely(value == (func_type)-1 && PyErr_Occurred()))\ + return (target_type) -1;\ + if (is_unsigned && unlikely(value < zero))\ + goto raise_neg_overflow;\ + else\ + goto raise_overflow;\ + }\ + }\ + return (target_type) value;\ + } + #if PY_MAJOR_VERSION < 3 static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags) { if (PyObject_CheckBuffer(obj)) return PyObject_GetBuffer(obj, view, flags); - if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) return __pyx_pw_5numpy_7ndarray_1__getbuffer__(obj, view, flags); + if (__Pyx_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) return __pyx_pw_5numpy_7ndarray_1__getbuffer__(obj, view, flags); PyErr_Format(PyExc_TypeError, "'%.200s' does not have the buffer interface", Py_TYPE(obj)->tp_name); return -1; } @@ -26527,109 +36517,420 @@ static void __Pyx_ReleaseBuffer(Py_buffer *view) { PyBuffer_Release(view); return; } - if (PyObject_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) { __pyx_pw_5numpy_7ndarray_3__releasebuffer__(obj, view); return; } - Py_DECREF(obj); + if ((0)) {} + else if (__Pyx_TypeCheck(obj, __pyx_ptype_5numpy_ndarray)) __pyx_pw_5numpy_7ndarray_3__releasebuffer__(obj, view); view->obj = NULL; + Py_DECREF(obj); } #endif - static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { - PyObject *empty_list = 0; - PyObject *module = 0; - PyObject *global_dict = 0; - PyObject *empty_dict = 0; - PyObject *list; - #if PY_VERSION_HEX < 0x03030000 - PyObject *py_import; - py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import); - if (!py_import) - goto bad; - #endif - if (from_list) - list = from_list; - else { - empty_list = PyList_New(0); - if (!empty_list) - goto bad; - list = empty_list; + /* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { + const long neg_one = (long) ((long) 0 - (long) 1), const_zero = (long) 0; + const int is_unsigned = neg_one > const_zero; + if (is_unsigned) { + if (sizeof(long) < sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(long) <= sizeof(unsigned long)) { + return PyLong_FromUnsignedLong((unsigned long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) { + return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); +#endif + } + } else { + if (sizeof(long) <= sizeof(long)) { + return PyInt_FromLong((long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) { + return PyLong_FromLongLong((PY_LONG_LONG) value); +#endif + } } - global_dict = PyModule_GetDict(__pyx_m); - if (!global_dict) - goto bad; - empty_dict = PyDict_New(); - if (!empty_dict) - goto bad; { - #if PY_MAJOR_VERSION >= 3 - if (level == -1) { - if (strchr(__Pyx_MODULE_NAME, '.')) { - #if PY_VERSION_HEX < 0x03030000 - PyObject *py_level = PyInt_FromLong(1); - if (!py_level) - goto bad; - module = PyObject_CallFunctionObjArgs(py_import, - name, global_dict, empty_dict, list, py_level, NULL); - Py_DECREF(py_level); - #else - module = PyImport_ImportModuleLevelObject( - name, global_dict, empty_dict, list, 1); - #endif - if (!module) { - if (!PyErr_ExceptionMatches(PyExc_ImportError)) - goto bad; - PyErr_Clear(); + int one = 1; int little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&value; + return _PyLong_FromByteArray(bytes, sizeof(long), + little, !is_unsigned); + } +} + +/* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value) { + const Py_intptr_t neg_one = (Py_intptr_t) ((Py_intptr_t) 0 - (Py_intptr_t) 1), const_zero = (Py_intptr_t) 0; + const int is_unsigned = neg_one > const_zero; + if (is_unsigned) { + if (sizeof(Py_intptr_t) < sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(Py_intptr_t) <= sizeof(unsigned long)) { + return PyLong_FromUnsignedLong((unsigned long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(Py_intptr_t) <= sizeof(unsigned PY_LONG_LONG)) { + return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); +#endif + } + } else { + if (sizeof(Py_intptr_t) <= sizeof(long)) { + return PyInt_FromLong((long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(Py_intptr_t) <= sizeof(PY_LONG_LONG)) { + return PyLong_FromLongLong((PY_LONG_LONG) value); +#endif + } + } + { + int one = 1; int little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&value; + return _PyLong_FromByteArray(bytes, sizeof(Py_intptr_t), + little, !is_unsigned); + } +} + +/* Declarations */ + #if CYTHON_CCOMPLEX + #ifdef __cplusplus + static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { + return ::std::complex< float >(x, y); + } + #else + static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { + return x + y*(__pyx_t_float_complex)_Complex_I; + } + #endif +#else + static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { + __pyx_t_float_complex z; + z.real = x; + z.imag = y; + return z; + } +#endif + +/* Arithmetic */ + #if CYTHON_CCOMPLEX +#else + static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + return (a.real == b.real) && (a.imag == b.imag); + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sum_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + __pyx_t_float_complex z; + z.real = a.real + b.real; + z.imag = a.imag + b.imag; + return z; + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_diff_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + __pyx_t_float_complex z; + z.real = a.real - b.real; + z.imag = a.imag - b.imag; + return z; + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prod_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + __pyx_t_float_complex z; + z.real = a.real * b.real - a.imag * b.imag; + z.imag = a.real * b.imag + a.imag * b.real; + return z; + } + #if 1 + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + if (b.imag == 0) { + return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real); + } else if (fabsf(b.real) >= fabsf(b.imag)) { + if (b.real == 0 && b.imag == 0) { + return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.imag); + } else { + float r = b.imag / b.real; + float s = 1.0 / (b.real + b.imag * r); + return __pyx_t_float_complex_from_parts( + (a.real + a.imag * r) * s, (a.imag - a.real * r) * s); + } + } else { + float r = b.real / b.imag; + float s = 1.0 / (b.imag + b.real * r); + return __pyx_t_float_complex_from_parts( + (a.real * r + a.imag) * s, (a.imag * r - a.real) * s); + } + } + #else + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + if (b.imag == 0) { + return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real); + } else { + float denom = b.real * b.real + b.imag * b.imag; + return __pyx_t_float_complex_from_parts( + (a.real * b.real + a.imag * b.imag) / denom, + (a.imag * b.real - a.real * b.imag) / denom); + } + } + #endif + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_neg_float(__pyx_t_float_complex a) { + __pyx_t_float_complex z; + z.real = -a.real; + z.imag = -a.imag; + return z; + } + static CYTHON_INLINE int __Pyx_c_is_zero_float(__pyx_t_float_complex a) { + return (a.real == 0) && (a.imag == 0); + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conj_float(__pyx_t_float_complex a) { + __pyx_t_float_complex z; + z.real = a.real; + z.imag = -a.imag; + return z; + } + #if 1 + static CYTHON_INLINE float __Pyx_c_abs_float(__pyx_t_float_complex z) { + #if !defined(HAVE_HYPOT) || defined(_MSC_VER) + return sqrtf(z.real*z.real + z.imag*z.imag); + #else + return hypotf(z.real, z.imag); + #endif + } + static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_pow_float(__pyx_t_float_complex a, __pyx_t_float_complex b) { + __pyx_t_float_complex z; + float r, lnr, theta, z_r, z_theta; + if (b.imag == 0 && b.real == (int)b.real) { + if (b.real < 0) { + float denom = a.real * a.real + a.imag * a.imag; + a.real = a.real / denom; + a.imag = -a.imag / denom; + b.real = -b.real; + } + switch ((int)b.real) { + case 0: + z.real = 1; + z.imag = 0; + return z; + case 1: + return a; + case 2: + z = __Pyx_c_prod_float(a, a); + return __Pyx_c_prod_float(a, a); + case 3: + z = __Pyx_c_prod_float(a, a); + return __Pyx_c_prod_float(z, a); + case 4: + z = __Pyx_c_prod_float(a, a); + return __Pyx_c_prod_float(z, z); } } - level = 0; + if (a.imag == 0) { + if (a.real == 0) { + return a; + } else if (b.imag == 0) { + z.real = powf(a.real, b.real); + z.imag = 0; + return z; + } else if (a.real > 0) { + r = a.real; + theta = 0; + } else { + r = -a.real; + theta = atan2f(0, -1); + } + } else { + r = __Pyx_c_abs_float(a); + theta = atan2f(a.imag, a.real); + } + lnr = logf(r); + z_r = expf(lnr * b.real - theta * b.imag); + z_theta = theta * b.real + lnr * b.imag; + z.real = z_r * cosf(z_theta); + z.imag = z_r * sinf(z_theta); + return z; } - #endif - if (!module) { - #if PY_VERSION_HEX < 0x03030000 - PyObject *py_level = PyInt_FromLong(level); - if (!py_level) - goto bad; - module = PyObject_CallFunctionObjArgs(py_import, - name, global_dict, empty_dict, list, py_level, NULL); - Py_DECREF(py_level); - #else - module = PyImport_ImportModuleLevelObject( - name, global_dict, empty_dict, list, level); - #endif - } - } -bad: - #if PY_VERSION_HEX < 0x03030000 - Py_XDECREF(py_import); #endif - Py_XDECREF(empty_list); - Py_XDECREF(empty_dict); - return module; -} - -#define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value) \ - { \ - func_type value = func_value; \ - if (sizeof(target_type) < sizeof(func_type)) { \ - if (unlikely(value != (func_type) (target_type) value)) { \ - func_type zero = 0; \ - if (is_unsigned && unlikely(value < zero)) \ - goto raise_neg_overflow; \ - else \ - goto raise_overflow; \ - } \ - } \ - return (target_type) value; \ - } - -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS - #include "longintrepr.h" - #endif #endif -static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { - const int neg_one = (int) -1, const_zero = 0; +/* Declarations */ + #if CYTHON_CCOMPLEX + #ifdef __cplusplus + static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { + return ::std::complex< double >(x, y); + } + #else + static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { + return x + y*(__pyx_t_double_complex)_Complex_I; + } + #endif +#else + static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { + __pyx_t_double_complex z; + z.real = x; + z.imag = y; + return z; + } +#endif + +/* Arithmetic */ + #if CYTHON_CCOMPLEX +#else + static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + return (a.real == b.real) && (a.imag == b.imag); + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + __pyx_t_double_complex z; + z.real = a.real + b.real; + z.imag = a.imag + b.imag; + return z; + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + __pyx_t_double_complex z; + z.real = a.real - b.real; + z.imag = a.imag - b.imag; + return z; + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + __pyx_t_double_complex z; + z.real = a.real * b.real - a.imag * b.imag; + z.imag = a.real * b.imag + a.imag * b.real; + return z; + } + #if 1 + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + if (b.imag == 0) { + return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real); + } else if (fabs(b.real) >= fabs(b.imag)) { + if (b.real == 0 && b.imag == 0) { + return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.imag); + } else { + double r = b.imag / b.real; + double s = 1.0 / (b.real + b.imag * r); + return __pyx_t_double_complex_from_parts( + (a.real + a.imag * r) * s, (a.imag - a.real * r) * s); + } + } else { + double r = b.real / b.imag; + double s = 1.0 / (b.imag + b.real * r); + return __pyx_t_double_complex_from_parts( + (a.real * r + a.imag) * s, (a.imag * r - a.real) * s); + } + } + #else + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + if (b.imag == 0) { + return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real); + } else { + double denom = b.real * b.real + b.imag * b.imag; + return __pyx_t_double_complex_from_parts( + (a.real * b.real + a.imag * b.imag) / denom, + (a.imag * b.real - a.real * b.imag) / denom); + } + } + #endif + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg_double(__pyx_t_double_complex a) { + __pyx_t_double_complex z; + z.real = -a.real; + z.imag = -a.imag; + return z; + } + static CYTHON_INLINE int __Pyx_c_is_zero_double(__pyx_t_double_complex a) { + return (a.real == 0) && (a.imag == 0); + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj_double(__pyx_t_double_complex a) { + __pyx_t_double_complex z; + z.real = a.real; + z.imag = -a.imag; + return z; + } + #if 1 + static CYTHON_INLINE double __Pyx_c_abs_double(__pyx_t_double_complex z) { + #if !defined(HAVE_HYPOT) || defined(_MSC_VER) + return sqrt(z.real*z.real + z.imag*z.imag); + #else + return hypot(z.real, z.imag); + #endif + } + static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow_double(__pyx_t_double_complex a, __pyx_t_double_complex b) { + __pyx_t_double_complex z; + double r, lnr, theta, z_r, z_theta; + if (b.imag == 0 && b.real == (int)b.real) { + if (b.real < 0) { + double denom = a.real * a.real + a.imag * a.imag; + a.real = a.real / denom; + a.imag = -a.imag / denom; + b.real = -b.real; + } + switch ((int)b.real) { + case 0: + z.real = 1; + z.imag = 0; + return z; + case 1: + return a; + case 2: + z = __Pyx_c_prod_double(a, a); + return __Pyx_c_prod_double(a, a); + case 3: + z = __Pyx_c_prod_double(a, a); + return __Pyx_c_prod_double(z, a); + case 4: + z = __Pyx_c_prod_double(a, a); + return __Pyx_c_prod_double(z, z); + } + } + if (a.imag == 0) { + if (a.real == 0) { + return a; + } else if (b.imag == 0) { + z.real = pow(a.real, b.real); + z.imag = 0; + return z; + } else if (a.real > 0) { + r = a.real; + theta = 0; + } else { + r = -a.real; + theta = atan2(0, -1); + } + } else { + r = __Pyx_c_abs_double(a); + theta = atan2(a.imag, a.real); + } + lnr = log(r); + z_r = exp(lnr * b.real - theta * b.imag); + z_theta = theta * b.real + lnr * b.imag; + z.real = z_r * cos(z_theta); + z.imag = z_r * sin(z_theta); + return z; + } + #endif +#endif + +/* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) { + const enum NPY_TYPES neg_one = (enum NPY_TYPES) ((enum NPY_TYPES) 0 - (enum NPY_TYPES) 1), const_zero = (enum NPY_TYPES) 0; + const int is_unsigned = neg_one > const_zero; + if (is_unsigned) { + if (sizeof(enum NPY_TYPES) < sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(enum NPY_TYPES) <= sizeof(unsigned long)) { + return PyLong_FromUnsignedLong((unsigned long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(enum NPY_TYPES) <= sizeof(unsigned PY_LONG_LONG)) { + return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); +#endif + } + } else { + if (sizeof(enum NPY_TYPES) <= sizeof(long)) { + return PyInt_FromLong((long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(enum NPY_TYPES) <= sizeof(PY_LONG_LONG)) { + return PyLong_FromLongLong((PY_LONG_LONG) value); +#endif + } + } + { + int one = 1; int little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&value; + return _PyLong_FromByteArray(bytes, sizeof(enum NPY_TYPES), + little, !is_unsigned); + } +} + +/* CIntFromPy */ + static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { + const int neg_one = (int) ((int) 0 - (int) 1), const_zero = (int) 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { @@ -26646,36 +36947,129 @@ static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { #endif if (likely(PyLong_Check(x))) { if (is_unsigned) { -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; switch (Py_SIZE(x)) { - case 0: return 0; - case 1: __PYX_VERIFY_RETURN_INT(int, digit, ((PyLongObject*)x)->ob_digit[0]); + case 0: return (int) 0; + case 1: __PYX_VERIFY_RETURN_INT(int, digit, digits[0]) + case 2: + if (8 * sizeof(int) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) >= 2 * PyLong_SHIFT) { + return (int) (((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); + } + } + break; + case 3: + if (8 * sizeof(int) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) >= 3 * PyLong_SHIFT) { + return (int) (((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); + } + } + break; + case 4: + if (8 * sizeof(int) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) >= 4 * PyLong_SHIFT) { + return (int) (((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); + } + } + break; } - #endif #endif +#if CYTHON_COMPILING_IN_CPYTHON if (unlikely(Py_SIZE(x) < 0)) { goto raise_neg_overflow; } +#else + { + int result = PyObject_RichCompareBool(x, Py_False, Py_LT); + if (unlikely(result < 0)) + return (int) -1; + if (unlikely(result == 1)) + goto raise_neg_overflow; + } +#endif if (sizeof(int) <= sizeof(unsigned long)) { - __PYX_VERIFY_RETURN_INT(int, unsigned long, PyLong_AsUnsignedLong(x)) - } else if (sizeof(int) <= sizeof(unsigned long long)) { - __PYX_VERIFY_RETURN_INT(int, unsigned long long, PyLong_AsUnsignedLongLong(x)) + __PYX_VERIFY_RETURN_INT_EXC(int, unsigned long, PyLong_AsUnsignedLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(int, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) +#endif } } else { -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; switch (Py_SIZE(x)) { - case 0: return 0; - case 1: __PYX_VERIFY_RETURN_INT(int, digit, +(((PyLongObject*)x)->ob_digit[0])); - case -1: __PYX_VERIFY_RETURN_INT(int, sdigit, -(sdigit) ((PyLongObject*)x)->ob_digit[0]); + case 0: return (int) 0; + case -1: __PYX_VERIFY_RETURN_INT(int, sdigit, (sdigit) (-(sdigit)digits[0])) + case 1: __PYX_VERIFY_RETURN_INT(int, digit, +digits[0]) + case -2: + if (8 * sizeof(int) - 1 > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) { + return (int) (((int)-1)*(((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case 2: + if (8 * sizeof(int) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) { + return (int) ((((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case -3: + if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) { + return (int) (((int)-1)*(((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case 3: + if (8 * sizeof(int) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) { + return (int) ((((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case -4: + if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) { + return (int) (((int)-1)*(((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case 4: + if (8 * sizeof(int) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) { + return (int) ((((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; } - #endif #endif if (sizeof(int) <= sizeof(long)) { - __PYX_VERIFY_RETURN_INT(int, long, PyLong_AsLong(x)) - } else if (sizeof(int) <= sizeof(long long)) { - __PYX_VERIFY_RETURN_INT(int, long long, PyLong_AsLongLong(x)) + __PYX_VERIFY_RETURN_INT_EXC(int, long, PyLong_AsLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(int, PY_LONG_LONG, PyLong_AsLongLong(x)) +#endif } } { @@ -26684,7 +37078,7 @@ static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); #else int val; - PyObject *v = __Pyx_PyNumber_Int(x); + PyObject *v = __Pyx_PyNumber_IntOrLong(x); #if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; @@ -26707,7 +37101,7 @@ static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { } } else { int val; - PyObject *tmp = __Pyx_PyNumber_Int(x); + PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); if (!tmp) return (int) -1; val = __Pyx_PyInt_As_int(tmp); Py_DECREF(tmp); @@ -26723,8 +37117,9 @@ raise_neg_overflow: return (int) -1; } -static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { - const long neg_one = (long) -1, const_zero = 0; +/* CIntFromPy */ + static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { + const long neg_one = (long) ((long) 0 - (long) 1), const_zero = (long) 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { @@ -26741,36 +37136,129 @@ static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { #endif if (likely(PyLong_Check(x))) { if (is_unsigned) { -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; switch (Py_SIZE(x)) { - case 0: return 0; - case 1: __PYX_VERIFY_RETURN_INT(long, digit, ((PyLongObject*)x)->ob_digit[0]); + case 0: return (long) 0; + case 1: __PYX_VERIFY_RETURN_INT(long, digit, digits[0]) + case 2: + if (8 * sizeof(long) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) >= 2 * PyLong_SHIFT) { + return (long) (((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); + } + } + break; + case 3: + if (8 * sizeof(long) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) >= 3 * PyLong_SHIFT) { + return (long) (((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); + } + } + break; + case 4: + if (8 * sizeof(long) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) >= 4 * PyLong_SHIFT) { + return (long) (((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); + } + } + break; } - #endif #endif +#if CYTHON_COMPILING_IN_CPYTHON if (unlikely(Py_SIZE(x) < 0)) { goto raise_neg_overflow; } +#else + { + int result = PyObject_RichCompareBool(x, Py_False, Py_LT); + if (unlikely(result < 0)) + return (long) -1; + if (unlikely(result == 1)) + goto raise_neg_overflow; + } +#endif if (sizeof(long) <= sizeof(unsigned long)) { - __PYX_VERIFY_RETURN_INT(long, unsigned long, PyLong_AsUnsignedLong(x)) - } else if (sizeof(long) <= sizeof(unsigned long long)) { - __PYX_VERIFY_RETURN_INT(long, unsigned long long, PyLong_AsUnsignedLongLong(x)) + __PYX_VERIFY_RETURN_INT_EXC(long, unsigned long, PyLong_AsUnsignedLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(long, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) +#endif } } else { -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; switch (Py_SIZE(x)) { - case 0: return 0; - case 1: __PYX_VERIFY_RETURN_INT(long, digit, +(((PyLongObject*)x)->ob_digit[0])); - case -1: __PYX_VERIFY_RETURN_INT(long, sdigit, -(sdigit) ((PyLongObject*)x)->ob_digit[0]); + case 0: return (long) 0; + case -1: __PYX_VERIFY_RETURN_INT(long, sdigit, (sdigit) (-(sdigit)digits[0])) + case 1: __PYX_VERIFY_RETURN_INT(long, digit, +digits[0]) + case -2: + if (8 * sizeof(long) - 1 > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + return (long) (((long)-1)*(((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case 2: + if (8 * sizeof(long) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + return (long) ((((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case -3: + if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + return (long) (((long)-1)*(((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case 3: + if (8 * sizeof(long) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + return (long) ((((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case -4: + if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + return (long) (((long)-1)*(((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case 4: + if (8 * sizeof(long) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + return (long) ((((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; } - #endif #endif if (sizeof(long) <= sizeof(long)) { - __PYX_VERIFY_RETURN_INT(long, long, PyLong_AsLong(x)) - } else if (sizeof(long) <= sizeof(long long)) { - __PYX_VERIFY_RETURN_INT(long, long long, PyLong_AsLongLong(x)) + __PYX_VERIFY_RETURN_INT_EXC(long, long, PyLong_AsLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(long, PY_LONG_LONG, PyLong_AsLongLong(x)) +#endif } } { @@ -26779,7 +37267,7 @@ static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); #else long val; - PyObject *v = __Pyx_PyNumber_Int(x); + PyObject *v = __Pyx_PyNumber_IntOrLong(x); #if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; @@ -26802,7 +37290,7 @@ static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { } } else { long val; - PyObject *tmp = __Pyx_PyNumber_Int(x); + PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); if (!tmp) return (long) -1; val = __Pyx_PyInt_As_long(tmp); Py_DECREF(tmp); @@ -26818,325 +37306,108 @@ raise_neg_overflow: return (long) -1; } -static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { - const int neg_one = (int) -1, const_zero = 0; - const int is_unsigned = neg_one > const_zero; - if (is_unsigned) { - if (sizeof(int) < sizeof(long)) { - return PyInt_FromLong((long) value); - } else if (sizeof(int) <= sizeof(unsigned long)) { - return PyLong_FromUnsignedLong((unsigned long) value); - } else if (sizeof(int) <= sizeof(unsigned long long)) { - return PyLong_FromUnsignedLongLong((unsigned long long) value); - } - } else { - if (sizeof(int) <= sizeof(long)) { - return PyInt_FromLong((long) value); - } else if (sizeof(int) <= sizeof(long long)) { - return PyLong_FromLongLong((long long) value); - } - } - { - int one = 1; int little = (int)*(unsigned char *)&one; - unsigned char *bytes = (unsigned char *)&value; - return _PyLong_FromByteArray(bytes, sizeof(int), - little, !is_unsigned); +/* FastTypeChecks */ + #if CYTHON_COMPILING_IN_CPYTHON +static int __Pyx_InBases(PyTypeObject *a, PyTypeObject *b) { + while (a) { + a = a->tp_base; + if (a == b) + return 1; } + return b == &PyBaseObject_Type; } - -static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { - const long neg_one = (long) -1, const_zero = 0; - const int is_unsigned = neg_one > const_zero; - if (is_unsigned) { - if (sizeof(long) < sizeof(long)) { - return PyInt_FromLong((long) value); - } else if (sizeof(long) <= sizeof(unsigned long)) { - return PyLong_FromUnsignedLong((unsigned long) value); - } else if (sizeof(long) <= sizeof(unsigned long long)) { - return PyLong_FromUnsignedLongLong((unsigned long long) value); - } - } else { - if (sizeof(long) <= sizeof(long)) { - return PyInt_FromLong((long) value); - } else if (sizeof(long) <= sizeof(long long)) { - return PyLong_FromLongLong((long long) value); +static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b) { + PyObject *mro; + if (a == b) return 1; + mro = a->tp_mro; + if (likely(mro)) { + Py_ssize_t i, n; + n = PyTuple_GET_SIZE(mro); + for (i = 0; i < n; i++) { + if (PyTuple_GET_ITEM(mro, i) == (PyObject *)b) + return 1; } + return 0; } - { - int one = 1; int little = (int)*(unsigned char *)&one; - unsigned char *bytes = (unsigned char *)&value; - return _PyLong_FromByteArray(bytes, sizeof(long), - little, !is_unsigned); - } + return __Pyx_InBases(a, b); } - -static CYTHON_INLINE PyObject* __Pyx_PyInt_From_Py_intptr_t(Py_intptr_t value) { - const Py_intptr_t neg_one = (Py_intptr_t) -1, const_zero = 0; - const int is_unsigned = neg_one > const_zero; - if (is_unsigned) { - if (sizeof(Py_intptr_t) < sizeof(long)) { - return PyInt_FromLong((long) value); - } else if (sizeof(Py_intptr_t) <= sizeof(unsigned long)) { - return PyLong_FromUnsignedLong((unsigned long) value); - } else if (sizeof(Py_intptr_t) <= sizeof(unsigned long long)) { - return PyLong_FromUnsignedLongLong((unsigned long long) value); - } - } else { - if (sizeof(Py_intptr_t) <= sizeof(long)) { - return PyInt_FromLong((long) value); - } else if (sizeof(Py_intptr_t) <= sizeof(long long)) { - return PyLong_FromLongLong((long long) value); +#if PY_MAJOR_VERSION == 2 +static int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject* exc_type2) { + PyObject *exception, *value, *tb; + int res; + __Pyx_PyThreadState_declare + __Pyx_PyThreadState_assign + __Pyx_ErrFetch(&exception, &value, &tb); + res = exc_type1 ? PyObject_IsSubclass(err, exc_type1) : 0; + if (unlikely(res == -1)) { + PyErr_WriteUnraisable(err); + res = 0; + } + if (!res) { + res = PyObject_IsSubclass(err, exc_type2); + if (unlikely(res == -1)) { + PyErr_WriteUnraisable(err); + res = 0; } } - { - int one = 1; int little = (int)*(unsigned char *)&one; - unsigned char *bytes = (unsigned char *)&value; - return _PyLong_FromByteArray(bytes, sizeof(Py_intptr_t), - little, !is_unsigned); - } + __Pyx_ErrRestore(exception, value, tb); + return res; } - -#if CYTHON_CCOMPLEX - #ifdef __cplusplus - static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { - return ::std::complex< float >(x, y); - } - #else - static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { - return x + y*(__pyx_t_float_complex)_Complex_I; - } - #endif #else - static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { - __pyx_t_float_complex z; - z.real = x; - z.imag = y; - return z; +static CYTHON_INLINE int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject *exc_type2) { + int res = exc_type1 ? __Pyx_IsSubtype((PyTypeObject*)err, (PyTypeObject*)exc_type1) : 0; + if (!res) { + res = __Pyx_IsSubtype((PyTypeObject*)err, (PyTypeObject*)exc_type2); + } + return res; +} +#endif +static int __Pyx_PyErr_GivenExceptionMatchesTuple(PyObject *exc_type, PyObject *tuple) { + Py_ssize_t i, n; + assert(PyExceptionClass_Check(exc_type)); + n = PyTuple_GET_SIZE(tuple); +#if PY_MAJOR_VERSION >= 3 + for (i=0; i(x, y); - } - #else - static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { - return x + y*(__pyx_t_double_complex)_Complex_I; - } - #endif -#else - static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { - __pyx_t_double_complex z; - z.real = x; - z.imag = y; - return z; - } -#endif - -#if CYTHON_CCOMPLEX -#else - static CYTHON_INLINE int __Pyx_c_eq(__pyx_t_double_complex a, __pyx_t_double_complex b) { - return (a.real == b.real) && (a.imag == b.imag); - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum(__pyx_t_double_complex a, __pyx_t_double_complex b) { - __pyx_t_double_complex z; - z.real = a.real + b.real; - z.imag = a.imag + b.imag; - return z; - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff(__pyx_t_double_complex a, __pyx_t_double_complex b) { - __pyx_t_double_complex z; - z.real = a.real - b.real; - z.imag = a.imag - b.imag; - return z; - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod(__pyx_t_double_complex a, __pyx_t_double_complex b) { - __pyx_t_double_complex z; - z.real = a.real * b.real - a.imag * b.imag; - z.imag = a.real * b.imag + a.imag * b.real; - return z; - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot(__pyx_t_double_complex a, __pyx_t_double_complex b) { - __pyx_t_double_complex z; - double denom = b.real * b.real + b.imag * b.imag; - z.real = (a.real * b.real + a.imag * b.imag) / denom; - z.imag = (a.imag * b.real - a.real * b.imag) / denom; - return z; - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg(__pyx_t_double_complex a) { - __pyx_t_double_complex z; - z.real = -a.real; - z.imag = -a.imag; - return z; - } - static CYTHON_INLINE int __Pyx_c_is_zero(__pyx_t_double_complex a) { - return (a.real == 0) && (a.imag == 0); - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj(__pyx_t_double_complex a) { - __pyx_t_double_complex z; - z.real = a.real; - z.imag = -a.imag; - return z; - } - #if 1 - static CYTHON_INLINE double __Pyx_c_abs(__pyx_t_double_complex z) { - #if !defined(HAVE_HYPOT) || defined(_MSC_VER) - return sqrt(z.real*z.real + z.imag*z.imag); - #else - return hypot(z.real, z.imag); - #endif - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow(__pyx_t_double_complex a, __pyx_t_double_complex b) { - __pyx_t_double_complex z; - double r, lnr, theta, z_r, z_theta; - if (b.imag == 0 && b.real == (int)b.real) { - if (b.real < 0) { - double denom = a.real * a.real + a.imag * a.imag; - a.real = a.real / denom; - a.imag = -a.imag / denom; - b.real = -b.real; - } - switch ((int)b.real) { - case 0: - z.real = 1; - z.imag = 0; - return z; - case 1: - return a; - case 2: - z = __Pyx_c_prod(a, a); - return __Pyx_c_prod(a, a); - case 3: - z = __Pyx_c_prod(a, a); - return __Pyx_c_prod(z, a); - case 4: - z = __Pyx_c_prod(a, a); - return __Pyx_c_prod(z, z); - } - } - if (a.imag == 0) { - if (a.real == 0) { - return a; - } - r = a.real; - theta = 0; - } else { - r = __Pyx_c_abs(a); - theta = atan2(a.imag, a.real); - } - lnr = log(r); - z_r = exp(lnr * b.real - theta * b.imag); - z_theta = theta * b.real + lnr * b.imag; - z.real = z_r * cos(z_theta); - z.imag = z_r * sin(z_theta); - return z; - } - #endif -#endif - -static int __Pyx_check_binary_version(void) { +/* CheckBinaryVersion */ + static int __Pyx_check_binary_version(void) { char ctversion[4], rtversion[4]; PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION); PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion()); @@ -27151,88 +37422,8 @@ static int __Pyx_check_binary_version(void) { return 0; } -#ifndef __PYX_HAVE_RT_ImportModule -#define __PYX_HAVE_RT_ImportModule -static PyObject *__Pyx_ImportModule(const char *name) { - PyObject *py_name = 0; - PyObject *py_module = 0; - py_name = __Pyx_PyIdentifier_FromString(name); - if (!py_name) - goto bad; - py_module = PyImport_Import(py_name); - Py_DECREF(py_name); - return py_module; -bad: - Py_XDECREF(py_name); - return 0; -} -#endif - -#ifndef __PYX_HAVE_RT_ImportType -#define __PYX_HAVE_RT_ImportType -static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, - size_t size, int strict) -{ - PyObject *py_module = 0; - PyObject *result = 0; - PyObject *py_name = 0; - char warning[200]; - Py_ssize_t basicsize; -#ifdef Py_LIMITED_API - PyObject *py_basicsize; -#endif - py_module = __Pyx_ImportModule(module_name); - if (!py_module) - goto bad; - py_name = __Pyx_PyIdentifier_FromString(class_name); - if (!py_name) - goto bad; - result = PyObject_GetAttr(py_module, py_name); - Py_DECREF(py_name); - py_name = 0; - Py_DECREF(py_module); - py_module = 0; - if (!result) - goto bad; - if (!PyType_Check(result)) { - PyErr_Format(PyExc_TypeError, - "%.200s.%.200s is not a type object", - module_name, class_name); - goto bad; - } -#ifndef Py_LIMITED_API - basicsize = ((PyTypeObject *)result)->tp_basicsize; -#else - py_basicsize = PyObject_GetAttrString(result, "__basicsize__"); - if (!py_basicsize) - goto bad; - basicsize = PyLong_AsSsize_t(py_basicsize); - Py_DECREF(py_basicsize); - py_basicsize = 0; - if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred()) - goto bad; -#endif - if (!strict && (size_t)basicsize > size) { - PyOS_snprintf(warning, sizeof(warning), - "%s.%s size changed, may indicate binary incompatibility", - module_name, class_name); - if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad; - } - else if ((size_t)basicsize != size) { - PyErr_Format(PyExc_ValueError, - "%.200s.%.200s has the wrong size, try recompiling", - module_name, class_name); - goto bad; - } - return (PyTypeObject *)result; -bad: - Py_XDECREF(py_module); - Py_XDECREF(result); - return NULL; -} -#endif - -static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { +/* InitStrings */ + static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { while (t->p) { #if PY_MAJOR_VERSION < 3 if (t->is_unicode) { @@ -27257,6 +37448,8 @@ static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { #endif if (!*t->p) return -1; + if (PyObject_Hash(*t->p) == -1) + return -1; ++t; } return 0; @@ -27265,53 +37458,60 @@ static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) { return __Pyx_PyUnicode_FromStringAndSize(c_str, (Py_ssize_t)strlen(c_str)); } -static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) { +static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject* o) { Py_ssize_t ignore; return __Pyx_PyObject_AsStringAndSize(o, &ignore); } -static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { +#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT +#if !CYTHON_PEP393_ENABLED +static const char* __Pyx_PyUnicode_AsStringAndSize(PyObject* o, Py_ssize_t *length) { + char* defenc_c; + PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL); + if (!defenc) return NULL; + defenc_c = PyBytes_AS_STRING(defenc); +#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII + { + char* end = defenc_c + PyBytes_GET_SIZE(defenc); + char* c; + for (c = defenc_c; c < end; c++) { + if ((unsigned char) (*c) >= 128) { + PyUnicode_AsASCIIString(o); + return NULL; + } + } + } +#endif + *length = PyBytes_GET_SIZE(defenc); + return defenc_c; +} +#else +static CYTHON_INLINE const char* __Pyx_PyUnicode_AsStringAndSize(PyObject* o, Py_ssize_t *length) { + if (unlikely(__Pyx_PyUnicode_READY(o) == -1)) return NULL; +#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII + if (likely(PyUnicode_IS_ASCII(o))) { + *length = PyUnicode_GET_LENGTH(o); + return PyUnicode_AsUTF8(o); + } else { + PyUnicode_AsASCIIString(o); + return NULL; + } +#else + return PyUnicode_AsUTF8AndSize(o, length); +#endif +} +#endif +#endif +static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT if ( #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII __Pyx_sys_getdefaultencoding_not_ascii && #endif PyUnicode_Check(o)) { -#if PY_VERSION_HEX < 0x03030000 - char* defenc_c; - PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL); - if (!defenc) return NULL; - defenc_c = PyBytes_AS_STRING(defenc); -#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII - { - char* end = defenc_c + PyBytes_GET_SIZE(defenc); - char* c; - for (c = defenc_c; c < end; c++) { - if ((unsigned char) (*c) >= 128) { - PyUnicode_AsASCIIString(o); - return NULL; - } - } - } -#endif - *length = PyBytes_GET_SIZE(defenc); - return defenc_c; -#else - if (__Pyx_PyUnicode_READY(o) == -1) return NULL; -#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII - if (PyUnicode_IS_ASCII(o)) { - *length = PyUnicode_GET_LENGTH(o); - return PyUnicode_AsUTF8(o); - } else { - PyUnicode_AsASCIIString(o); - return NULL; - } -#else - return PyUnicode_AsUTF8AndSize(o, length); -#endif -#endif + return __Pyx_PyUnicode_AsStringAndSize(o, length); } else #endif -#if !CYTHON_COMPILING_IN_PYPY +#if (!CYTHON_COMPILING_IN_PYPY) || (defined(PyByteArray_AS_STRING) && defined(PyByteArray_GET_SIZE)) if (PyByteArray_Check(o)) { *length = PyByteArray_GET_SIZE(o); return PyByteArray_AS_STRING(o); @@ -27332,43 +37532,74 @@ static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) { if (is_true | (x == Py_False) | (x == Py_None)) return is_true; else return PyObject_IsTrue(x); } -static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x) { +static CYTHON_INLINE int __Pyx_PyObject_IsTrueAndDecref(PyObject* x) { + int retval; + if (unlikely(!x)) return -1; + retval = __Pyx_PyObject_IsTrue(x); + Py_DECREF(x); + return retval; +} +static PyObject* __Pyx_PyNumber_IntOrLongWrongResultType(PyObject* result, const char* type_name) { +#if PY_MAJOR_VERSION >= 3 + if (PyLong_Check(result)) { + if (PyErr_WarnFormat(PyExc_DeprecationWarning, 1, + "__int__ returned non-int (type %.200s). " + "The ability to return an instance of a strict subclass of int " + "is deprecated, and may be removed in a future version of Python.", + Py_TYPE(result)->tp_name)) { + Py_DECREF(result); + return NULL; + } + return result; + } +#endif + PyErr_Format(PyExc_TypeError, + "__%.4s__ returned non-%.4s (type %.200s)", + type_name, type_name, Py_TYPE(result)->tp_name); + Py_DECREF(result); + return NULL; +} +static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x) { +#if CYTHON_USE_TYPE_SLOTS PyNumberMethods *m; +#endif const char *name = NULL; PyObject *res = NULL; #if PY_MAJOR_VERSION < 3 - if (PyInt_Check(x) || PyLong_Check(x)) + if (likely(PyInt_Check(x) || PyLong_Check(x))) #else - if (PyLong_Check(x)) + if (likely(PyLong_Check(x))) #endif - return Py_INCREF(x), x; + return __Pyx_NewRef(x); +#if CYTHON_USE_TYPE_SLOTS m = Py_TYPE(x)->tp_as_number; -#if PY_MAJOR_VERSION < 3 + #if PY_MAJOR_VERSION < 3 if (m && m->nb_int) { name = "int"; - res = PyNumber_Int(x); + res = m->nb_int(x); } else if (m && m->nb_long) { name = "long"; - res = PyNumber_Long(x); + res = m->nb_long(x); } -#else - if (m && m->nb_int) { + #else + if (likely(m && m->nb_int)) { name = "int"; - res = PyNumber_Long(x); + res = m->nb_int(x); + } + #endif +#else + if (!PyBytes_CheckExact(x) && !PyUnicode_CheckExact(x)) { + res = PyNumber_Int(x); } #endif - if (res) { + if (likely(res)) { #if PY_MAJOR_VERSION < 3 - if (!PyInt_Check(res) && !PyLong_Check(res)) { + if (unlikely(!PyInt_Check(res) && !PyLong_Check(res))) { #else - if (!PyLong_Check(res)) { + if (unlikely(!PyLong_CheckExact(res))) { #endif - PyErr_Format(PyExc_TypeError, - "__%.4s__ returned non-%.4s (type %.200s)", - name, name, Py_TYPE(res)->tp_name); - Py_DECREF(res); - return NULL; + return __Pyx_PyNumber_IntOrLongWrongResultType(res, name); } } else if (!PyErr_Occurred()) { @@ -27381,18 +37612,55 @@ static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) { Py_ssize_t ival; PyObject *x; #if PY_MAJOR_VERSION < 3 - if (likely(PyInt_CheckExact(b))) - return PyInt_AS_LONG(b); + if (likely(PyInt_CheckExact(b))) { + if (sizeof(Py_ssize_t) >= sizeof(long)) + return PyInt_AS_LONG(b); + else + return PyInt_AsSsize_t(b); + } #endif if (likely(PyLong_CheckExact(b))) { - #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS - switch (Py_SIZE(b)) { - case -1: return -(sdigit)((PyLongObject*)b)->ob_digit[0]; - case 0: return 0; - case 1: return ((PyLongObject*)b)->ob_digit[0]; - } - #endif + #if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)b)->ob_digit; + const Py_ssize_t size = Py_SIZE(b); + if (likely(__Pyx_sst_abs(size) <= 1)) { + ival = likely(size) ? digits[0] : 0; + if (size == -1) ival = -ival; + return ival; + } else { + switch (size) { + case 2: + if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) { + return (Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case -2: + if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) { + return -(Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case 3: + if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) { + return (Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case -3: + if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) { + return -(Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case 4: + if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) { + return (Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case -4: + if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) { + return -(Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + } + } #endif return PyLong_AsSsize_t(b); } @@ -27402,6 +37670,9 @@ static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) { Py_DECREF(x); return ival; } +static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b) { + return b ? __Pyx_NewRef(Py_True) : __Pyx_NewRef(Py_False); +} static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) { return PyInt_FromSize_t(ival); } diff --git a/GPy/models/state_space_cython.pyx b/GPy/models/state_space_cython.pyx index 2626b9e7..ddfce6f0 100644 --- a/GPy/models/state_space_cython.pyx +++ b/GPy/models/state_space_cython.pyx @@ -484,7 +484,7 @@ cdef class AQcompute_batch_Cython(Q_handling_Cython): if matrix_index in self.Q_square_root_dict: square_root = self.Q_square_root_dict[matrix_index] else: - if matrix_index not in self.Q_svd_dict + if matrix_index not in self.Q_svd_dict: U,S,Vh = sp.linalg.svd( self.Qs[:,:, matrix_index], full_matrices=False, compute_uv=True, overwrite_a=False, check_finite=False) @@ -514,7 +514,7 @@ cdef class AQcompute_batch_Cython(Q_handling_Cython): if matrix_index in self.Q_inverse_dict: Q_inverse = self.Q_inverse_dict[matrix_index] else: - if matrix_index not in self.Q_svd_dict + if matrix_index not in self.Q_svd_dict: U,S,Vh = sp.linalg.svd( self.Qs[:,:, matrix_index], full_matrices=False, compute_uv=True, overwrite_a=False, check_finite=False) @@ -522,7 +522,7 @@ cdef class AQcompute_batch_Cython(Q_handling_Cython): else: U,S,Vh = self.Q_svd_dict[matrix_index] - Q_inverse = Q_inverse = np.dot( Vh.T * ( 1.0/(S + jitter)) , U.T ) + Q_inverse = Q_inverse = np.dot( Vh.T * ( 1.0/(S + jitter)) , U.T ) self.Q_inverse_dict[matrix_index] = Q_inverse return Q_inverse @@ -998,4 +998,4 @@ def _cont_discr_kalman_filter_raw_Cython(int state_dim, Dynamic_Callables_Cython M[k+1,:,:] = m_upd # separate mean value for each time series P[k+1,:,:] = P_upd[0] - return (M, P, log_likelihood, grad_log_likelihood, p_dynamic_callables.reset(False)) \ No newline at end of file + return (M, P, log_likelihood, grad_log_likelihood, p_dynamic_callables.reset(False))