apunkt/GPy
1
0
Fork 0
mirror of https://github.com/SheffieldML/GPy.git synced 2026-06-02 14:45:15 +02:00
Code Issues Projects Releases Packages Wiki Activity Actions

Merge pull request #77 from jamesmcm/devel

Browse source 
Devel
This commit is contained in:
James McMurray 2013-09-19 06:39:06 -07:00
commit dfb00f46b4
17 changed files with 772 additions and 230 deletions
Download patch file Download diff file Expand all files Collapse all files

49
README.md
View file

@ -1,10 +1,57 @@
GPy
===
A Gaussian processes framework in python
A Gaussian processes framework in Python.
* [Online documentation](https://gpy.readthedocs.org/en/latest/)
* [Unit tests (Travis-CI)](https://travis-ci.org/SheffieldML/GPy)
Continuous integration status: ![CI status](https://travis-ci.org/SheffieldML/GPy.png)
Compiling documentation:
========================
The documentation is stored in doc/ and is compiled with the Sphinx Python documentation generator, and is written in the reStructuredText format.
The Sphinx documentation is available here: http://sphinx-doc.org/latest/contents.html
Installing dependencies:
------------------------
To compile the documentation, first ensure that Sphinx is installed. On Debian-based systems, this can be achieved as follows:
sudo apt-get install python-pip
sudo pip install sphinx
A LaTeX distribution is also required to compile the equations. Note that the extra packages are necessary to install the unicode packages. To compile the equations to PNG format for use in HTML pages, the package *dvipng* must be installed. IPython is also required. On Debian-based systems, this can be achieved as follows:
sudo apt-get install texlive texlive-latex-extra texlive-base texlive-recommended
sudo apt-get install dvipng
sudo apt-get install ipython
Compiling documentation:
------------------------
The documentation can be compiled as follows:
cd doc
make html
The HTML files are then stored in doc/_build/
Running unit tests:
===================
Ensure nose is installed via pip:
pip install nose
Run nosetests from the root directory of the repository:
nosetests -v

69
doc/GPy.core.rst
View file

@ -1,91 +1,102 @@
core Package
============
GPy.core package
================
:mod:`core` Package
-------------------
Submodules
----------
.. automodule:: GPy.core
:members:
:undoc-members:
:show-inheritance:
:mod:`domains` Module
---------------------
GPy.core.domains module
-----------------------
.. automodule:: GPy.core.domains
:members:
:undoc-members:
:show-inheritance:
:mod:`fitc` Module
------------------
GPy.core.fitc module
--------------------
.. automodule:: GPy.core.fitc
:members:
:undoc-members:
:show-inheritance:
:mod:`gp` Module
----------------
GPy.core.gp module
------------------
.. automodule:: GPy.core.gp
:members:
:undoc-members:
:show-inheritance:
:mod:`gp_base` Module
---------------------
GPy.core.gp_base module
-----------------------
.. automodule:: GPy.core.gp_base
:members:
:undoc-members:
:show-inheritance:
:mod:`model` Module
-------------------
GPy.core.mapping module
-----------------------
.. automodule:: GPy.core.mapping
:members:
:undoc-members:
:show-inheritance:
GPy.core.model module
---------------------
.. automodule:: GPy.core.model
:members:
:undoc-members:
:show-inheritance:
:mod:`parameterized` Module
---------------------------
GPy.core.parameterized module
-----------------------------
.. automodule:: GPy.core.parameterized
:members:
:undoc-members:
:show-inheritance:
:mod:`priors` Module
--------------------
GPy.core.priors module
----------------------
.. automodule:: GPy.core.priors
:members:
:undoc-members:
:show-inheritance:
:mod:`sparse_gp` Module
-----------------------
GPy.core.sparse_gp module
-------------------------
.. automodule:: GPy.core.sparse_gp
:members:
:undoc-members:
:show-inheritance:
:mod:`svigp` Module
-------------------
GPy.core.svigp module
---------------------
.. automodule:: GPy.core.svigp
:members:
:undoc-members:
:show-inheritance:
:mod:`transformations` Module
-----------------------------
GPy.core.transformations module
-------------------------------
.. automodule:: GPy.core.transformations
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.core
:members:
:undoc-members:
:show-inheritance:

41
doc/GPy.examples.rst
View file

@ -1,51 +1,54 @@
examples Package
================
GPy.examples package
====================
:mod:`examples` Package
-----------------------
Submodules
----------
.. automodule:: GPy.examples
:members:
:undoc-members:
:show-inheritance:
:mod:`classification` Module
----------------------------
GPy.examples.classification module
----------------------------------
.. automodule:: GPy.examples.classification
:members:
:undoc-members:
:show-inheritance:
:mod:`dimensionality_reduction` Module
--------------------------------------
GPy.examples.dimensionality_reduction module
--------------------------------------------
.. automodule:: GPy.examples.dimensionality_reduction
:members:
:undoc-members:
:show-inheritance:
:mod:`regression` Module
------------------------
GPy.examples.regression module
------------------------------
.. automodule:: GPy.examples.regression
:members:
:undoc-members:
:show-inheritance:
:mod:`stochastic` Module
------------------------
GPy.examples.stochastic module
------------------------------
.. automodule:: GPy.examples.stochastic
:members:
:undoc-members:
:show-inheritance:
:mod:`tutorials` Module
-----------------------
GPy.examples.tutorials module
-----------------------------
.. automodule:: GPy.examples.tutorials
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.examples
:members:
:undoc-members:
:show-inheritance:

39
doc/GPy.inference.rst
View file

@ -1,51 +1,62 @@
inference Package
=================
GPy.inference package
=====================
:mod:`conjugate_gradient_descent` Module
----------------------------------------
Submodules
----------
GPy.inference.conjugate_gradient_descent module
-----------------------------------------------
.. automodule:: GPy.inference.conjugate_gradient_descent
:members:
:undoc-members:
:show-inheritance:
:mod:`gradient_descent_update_rules` Module
-------------------------------------------
GPy.inference.gradient_descent_update_rules module
--------------------------------------------------
.. automodule:: GPy.inference.gradient_descent_update_rules
:members:
:undoc-members:
:show-inheritance:
:mod:`optimization` Module
--------------------------
GPy.inference.optimization module
---------------------------------
.. automodule:: GPy.inference.optimization
:members:
:undoc-members:
:show-inheritance:
:mod:`samplers` Module
----------------------
GPy.inference.samplers module
-----------------------------
.. automodule:: GPy.inference.samplers
:members:
:undoc-members:
:show-inheritance:
:mod:`scg` Module
-----------------
GPy.inference.scg module
------------------------
.. automodule:: GPy.inference.scg
:members:
:undoc-members:
:show-inheritance:
:mod:`sgd` Module
-----------------
GPy.inference.sgd module
------------------------
.. automodule:: GPy.inference.sgd
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.inference
:members:
:undoc-members:
:show-inheritance:

246
doc/GPy.kern.parts.rst Normal file
View file

@ -0,0 +1,246 @@
GPy.kern.parts package
======================
Submodules
----------
GPy.kern.parts.Brownian module
------------------------------
.. automodule:: GPy.kern.parts.Brownian
:members:
:undoc-members:
:show-inheritance:
GPy.kern.parts.Matern32 module
------------------------------
.. automodule:: GPy.kern.parts.Matern32
:members:
:undoc-members:
:show-inheritance:
GPy.kern.parts.Matern52 module
------------------------------
.. automodule:: GPy.kern.parts.Matern52
:members:
:undoc-members:
:show-inheritance:
GPy.kern.parts.bias module
--------------------------
.. automodule:: GPy.kern.parts.bias
:members:
:undoc-members:
:show-inheritance:
GPy.kern.parts.coregionalize module
-----------------------------------
.. automodule:: GPy.kern.parts.coregionalize
:members:
:undoc-members:
:show-inheritance:
GPy.kern.parts.exponential module
---------------------------------
.. automodule:: GPy.kern.parts.exponential
:members:
:undoc-members:
:show-inheritance:
GPy.kern.parts.finite_dimensional module
----------------------------------------
.. automodule:: GPy.kern.parts.finite_dimensional
:members:
:undoc-members:
:show-inheritance:
GPy.kern.parts.fixed module
---------------------------
.. automodule:: GPy.kern.parts.fixed
:members:
:undoc-members:
:show-inheritance:
GPy.kern.parts.gibbs module
---------------------------
.. automodule:: GPy.kern.parts.gibbs
:members:
:undoc-members:
:show-inheritance:
GPy.kern.parts.hetero module
----------------------------
.. automodule:: GPy.kern.parts.hetero
:members:
:undoc-members:
:show-inheritance:
GPy.kern.parts.hierarchical module
----------------------------------
.. automodule:: GPy.kern.parts.hierarchical
:members:
:undoc-members:
:show-inheritance:
GPy.kern.parts.independent_outputs module
-----------------------------------------
.. automodule:: GPy.kern.parts.independent_outputs
:members:
:undoc-members:
:show-inheritance:
GPy.kern.parts.kernpart module
------------------------------
.. automodule:: GPy.kern.parts.kernpart
:members:
:undoc-members:
:show-inheritance:
GPy.kern.parts.linear module
----------------------------
.. automodule:: GPy.kern.parts.linear
:members:
:undoc-members:
:show-inheritance:
GPy.kern.parts.mlp module
-------------------------
.. automodule:: GPy.kern.parts.mlp
:members:
:undoc-members:
:show-inheritance:
GPy.kern.parts.periodic_Matern32 module
---------------------------------------
.. automodule:: GPy.kern.parts.periodic_Matern32
:members:
:undoc-members:
:show-inheritance:
GPy.kern.parts.periodic_Matern52 module
---------------------------------------
.. automodule:: GPy.kern.parts.periodic_Matern52
:members:
:undoc-members:
:show-inheritance:
GPy.kern.parts.periodic_exponential module
------------------------------------------
.. automodule:: GPy.kern.parts.periodic_exponential
:members:
:undoc-members:
:show-inheritance:
GPy.kern.parts.poly module
--------------------------
.. automodule:: GPy.kern.parts.poly
:members:
:undoc-members:
:show-inheritance:
GPy.kern.parts.prod module
--------------------------
.. automodule:: GPy.kern.parts.prod
:members:
:undoc-members:
:show-inheritance:
GPy.kern.parts.prod_orthogonal module
-------------------------------------
.. automodule:: GPy.kern.parts.prod_orthogonal
:members:
:undoc-members:
:show-inheritance:
GPy.kern.parts.rational_quadratic module
----------------------------------------
.. automodule:: GPy.kern.parts.rational_quadratic
:members:
:undoc-members:
:show-inheritance:
GPy.kern.parts.rbf module
-------------------------
.. automodule:: GPy.kern.parts.rbf
:members:
:undoc-members:
:show-inheritance:
GPy.kern.parts.rbf_inv module
-----------------------------
.. automodule:: GPy.kern.parts.rbf_inv
:members:
:undoc-members:
:show-inheritance:
GPy.kern.parts.rbfcos module
----------------------------
.. automodule:: GPy.kern.parts.rbfcos
:members:
:undoc-members:
:show-inheritance:
GPy.kern.parts.spline module
----------------------------
.. automodule:: GPy.kern.parts.spline
:members:
:undoc-members:
:show-inheritance:
GPy.kern.parts.symmetric module
-------------------------------
.. automodule:: GPy.kern.parts.symmetric
:members:
:undoc-members:
:show-inheritance:
GPy.kern.parts.sympykern module
-------------------------------
.. automodule:: GPy.kern.parts.sympykern
:members:
:undoc-members:
:show-inheritance:
GPy.kern.parts.white module
---------------------------
.. automodule:: GPy.kern.parts.white
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.kern.parts
:members:
:undoc-members:
:show-inheritance:

55
doc/GPy.kern.rst
View file

@ -1,29 +1,5 @@
kern Package
============
:mod:`kern` Package
-------------------
.. automodule:: GPy.kern
:members:
:undoc-members:
:show-inheritance:
:mod:`constructors` Module
--------------------------
.. automodule:: GPy.kern.constructors
:members:
:undoc-members:
:show-inheritance:
:mod:`kern` Module
------------------
.. automodule:: GPy.kern.kern
:members:
:undoc-members:
:show-inheritance:
GPy.kern package
================
Subpackages
-----------
@ -32,3 +8,30 @@ Subpackages
GPy.kern.parts
Submodules
----------
GPy.kern.constructors module
----------------------------
.. automodule:: GPy.kern.constructors
:members:
:undoc-members:
:show-inheritance:
GPy.kern.kern module
--------------------
.. automodule:: GPy.kern.kern
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.kern
:members:
:undoc-members:
:show-inheritance:

70
doc/GPy.likelihoods.noise_models.rst Normal file
View file

@ -0,0 +1,70 @@
GPy.likelihoods.noise_models package
====================================
Submodules
----------
GPy.likelihoods.noise_models.binomial_noise module
--------------------------------------------------
.. automodule:: GPy.likelihoods.noise_models.binomial_noise
:members:
:undoc-members:
:show-inheritance:
GPy.likelihoods.noise_models.exponential_noise module
-----------------------------------------------------
.. automodule:: GPy.likelihoods.noise_models.exponential_noise
:members:
:undoc-members:
:show-inheritance:
GPy.likelihoods.noise_models.gamma_noise module
-----------------------------------------------
.. automodule:: GPy.likelihoods.noise_models.gamma_noise
:members:
:undoc-members:
:show-inheritance:
GPy.likelihoods.noise_models.gaussian_noise module
--------------------------------------------------
.. automodule:: GPy.likelihoods.noise_models.gaussian_noise
:members:
:undoc-members:
:show-inheritance:
GPy.likelihoods.noise_models.gp_transformations module
------------------------------------------------------
.. automodule:: GPy.likelihoods.noise_models.gp_transformations
:members:
:undoc-members:
:show-inheritance:
GPy.likelihoods.noise_models.noise_distributions module
-------------------------------------------------------
.. automodule:: GPy.likelihoods.noise_models.noise_distributions
:members:
:undoc-members:
:show-inheritance:
GPy.likelihoods.noise_models.poisson_noise module
-------------------------------------------------
.. automodule:: GPy.likelihoods.noise_models.poisson_noise
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.likelihoods.noise_models
:members:
:undoc-members:
:show-inheritance:

60
doc/GPy.likelihoods.rst
View file

@ -1,51 +1,69 @@
likelihoods Package
===================
GPy.likelihoods package
=======================
:mod:`likelihoods` Package
--------------------------
Subpackages
-----------
.. automodule:: GPy.likelihoods
:members:
:undoc-members:
:show-inheritance:
.. toctree::
:mod:`ep` Module
----------------
GPy.likelihoods.noise_models
Submodules
----------
GPy.likelihoods.ep module
-------------------------
.. automodule:: GPy.likelihoods.ep
:members:
:undoc-members:
:show-inheritance:
:mod:`gaussian` Module
----------------------
GPy.likelihoods.ep_mixed_noise module
-------------------------------------
.. automodule:: GPy.likelihoods.ep_mixed_noise
:members:
:undoc-members:
:show-inheritance:
GPy.likelihoods.gaussian module
-------------------------------
.. automodule:: GPy.likelihoods.gaussian
:members:
:undoc-members:
:show-inheritance:
:mod:`likelihood` Module
------------------------
GPy.likelihoods.gaussian_mixed_noise module
-------------------------------------------
.. automodule:: GPy.likelihoods.gaussian_mixed_noise
:members:
:undoc-members:
:show-inheritance:
GPy.likelihoods.likelihood module
---------------------------------
.. automodule:: GPy.likelihoods.likelihood
:members:
:undoc-members:
:show-inheritance:
:mod:`likelihood_functions` Module
----------------------------------
GPy.likelihoods.noise_model_constructors module
-----------------------------------------------
.. automodule:: GPy.likelihoods.likelihood_functions
.. automodule:: GPy.likelihoods.noise_model_constructors
:members:
:undoc-members:
:show-inheritance:
:mod:`link_functions` Module
----------------------------
.. automodule:: GPy.likelihoods.link_functions
Module contents
---------------
.. automodule:: GPy.likelihoods
:members:
:undoc-members:
:show-inheritance:

38
doc/GPy.mappings.rst Normal file
View file

@ -0,0 +1,38 @@
GPy.mappings package
====================
Submodules
----------
GPy.mappings.kernel module
--------------------------
.. automodule:: GPy.mappings.kernel
:members:
:undoc-members:
:show-inheritance:
GPy.mappings.linear module
--------------------------
.. automodule:: GPy.mappings.linear
:members:
:undoc-members:
:show-inheritance:
GPy.mappings.mlp module
-----------------------
.. automodule:: GPy.mappings.mlp
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.mappings
:members:
:undoc-members:
:show-inheritance:

97
doc/GPy.models.rst
View file

@ -1,99 +1,134 @@
models Package
==============
GPy.models package
==================
:mod:`models` Package
---------------------
Submodules
----------
.. automodule:: GPy.models
:members:
:undoc-members:
:show-inheritance:
:mod:`bayesian_gplvm` Module
----------------------------
GPy.models.bayesian_gplvm module
--------------------------------
.. automodule:: GPy.models.bayesian_gplvm
:members:
:undoc-members:
:show-inheritance:
:mod:`fitc_classification` Module
---------------------------------
GPy.models.bcgplvm module
-------------------------
.. automodule:: GPy.models.bcgplvm
:members:
:undoc-members:
:show-inheritance:
GPy.models.fitc_classification module
-------------------------------------
.. automodule:: GPy.models.fitc_classification
:members:
:undoc-members:
:show-inheritance:
:mod:`gp_classification` Module
-------------------------------
GPy.models.gp_classification module
-----------------------------------
.. automodule:: GPy.models.gp_classification
:members:
:undoc-members:
:show-inheritance:
:mod:`gp_regression` Module
---------------------------
GPy.models.gp_multioutput_regression module
-------------------------------------------
.. automodule:: GPy.models.gp_multioutput_regression
:members:
:undoc-members:
:show-inheritance:
GPy.models.gp_regression module
-------------------------------
.. automodule:: GPy.models.gp_regression
:members:
:undoc-members:
:show-inheritance:
:mod:`gplvm` Module
-------------------
GPy.models.gplvm module
-----------------------
.. automodule:: GPy.models.gplvm
:members:
:undoc-members:
:show-inheritance:
:mod:`mrd` Module
-----------------
GPy.models.gradient_checker module
----------------------------------
.. automodule:: GPy.models.gradient_checker
:members:
:undoc-members:
:show-inheritance:
GPy.models.mrd module
---------------------
.. automodule:: GPy.models.mrd
:members:
:undoc-members:
:show-inheritance:
:mod:`sparse_gp_classification` Module
--------------------------------------
GPy.models.sparse_gp_classification module
------------------------------------------
.. automodule:: GPy.models.sparse_gp_classification
:members:
:undoc-members:
:show-inheritance:
:mod:`sparse_gp_regression` Module
----------------------------------
GPy.models.sparse_gp_multioutput_regression module
--------------------------------------------------
.. automodule:: GPy.models.sparse_gp_multioutput_regression
:members:
:undoc-members:
:show-inheritance:
GPy.models.sparse_gp_regression module
--------------------------------------
.. automodule:: GPy.models.sparse_gp_regression
:members:
:undoc-members:
:show-inheritance:
:mod:`sparse_gplvm` Module
--------------------------
GPy.models.sparse_gplvm module
------------------------------
.. automodule:: GPy.models.sparse_gplvm
:members:
:undoc-members:
:show-inheritance:
:mod:`svigp_regression` Module
------------------------------
GPy.models.svigp_regression module
----------------------------------
.. automodule:: GPy.models.svigp_regression
:members:
:undoc-members:
:show-inheritance:
:mod:`warped_gp` Module
-----------------------
GPy.models.warped_gp module
---------------------------
.. automodule:: GPy.models.warped_gp
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.models
:members:
:undoc-members:
:show-inheritance:

18
doc/GPy.rst
View file

@ -1,14 +1,6 @@
GPy Package
GPy package
===========
:mod:`GPy` Package
------------------
.. automodule:: GPy.__init__
:members:
:undoc-members:
:show-inheritance:
Subpackages
-----------
@ -19,7 +11,15 @@ Subpackages
GPy.inference
GPy.kern
GPy.likelihoods
GPy.mappings
GPy.models
GPy.testing
GPy.util
Module contents
---------------
.. automodule:: GPy
:members:
:undoc-members:
:show-inheritance:

83
doc/GPy.testing.rst
View file

@ -1,107 +1,110 @@
testing Package
===============
GPy.testing package
===================
:mod:`testing` Package
----------------------
Submodules
----------
.. automodule:: GPy.testing
:members:
:undoc-members:
:show-inheritance:
:mod:`bgplvm_tests` Module
--------------------------
GPy.testing.bgplvm_tests module
-------------------------------
.. automodule:: GPy.testing.bgplvm_tests
:members:
:undoc-members:
:show-inheritance:
:mod:`cgd_tests` Module
-----------------------
GPy.testing.cgd_tests module
----------------------------
.. automodule:: GPy.testing.cgd_tests
:members:
:undoc-members:
:show-inheritance:
:mod:`checkgrad` Module
-----------------------
.. automodule:: GPy.testing.checkgrad
:members:
:undoc-members:
:show-inheritance:
:mod:`examples_tests` Module
----------------------------
GPy.testing.examples_tests module
---------------------------------
.. automodule:: GPy.testing.examples_tests
:members:
:undoc-members:
:show-inheritance:
:mod:`gplvm_tests` Module
-------------------------
GPy.testing.gplvm_tests module
------------------------------
.. automodule:: GPy.testing.gplvm_tests
:members:
:undoc-members:
:show-inheritance:
:mod:`kernel_tests` Module
--------------------------
GPy.testing.kernel_tests module
-------------------------------
.. automodule:: GPy.testing.kernel_tests
:members:
:undoc-members:
:show-inheritance:
:mod:`mrd_tests` Module
-----------------------
GPy.testing.mapping_tests module
--------------------------------
.. automodule:: GPy.testing.mapping_tests
:members:
:undoc-members:
:show-inheritance:
GPy.testing.mrd_tests module
----------------------------
.. automodule:: GPy.testing.mrd_tests
:members:
:undoc-members:
:show-inheritance:
:mod:`prior_tests` Module
-------------------------
GPy.testing.prior_tests module
------------------------------
.. automodule:: GPy.testing.prior_tests
:members:
:undoc-members:
:show-inheritance:
:mod:`psi_stat_expactation_tests` Module
----------------------------------------
GPy.testing.psi_stat_expectation_tests module
---------------------------------------------
.. automodule:: GPy.testing.psi_stat_expactation_tests
.. automodule:: GPy.testing.psi_stat_expectation_tests
:members:
:undoc-members:
:show-inheritance:
:mod:`psi_stat_gradient_tests` Module
-------------------------------------
GPy.testing.psi_stat_gradient_tests module
------------------------------------------
.. automodule:: GPy.testing.psi_stat_gradient_tests
:members:
:undoc-members:
:show-inheritance:
:mod:`sparse_gplvm_tests` Module
--------------------------------
GPy.testing.sparse_gplvm_tests module
-------------------------------------
.. automodule:: GPy.testing.sparse_gplvm_tests
:members:
:undoc-members:
:show-inheritance:
:mod:`unit_tests` Module
------------------------
GPy.testing.unit_tests module
-----------------------------
.. automodule:: GPy.testing.unit_tests
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.testing
:members:
:undoc-members:
:show-inheritance:

30
doc/GPy.util.latent_space_visualizations.controllers.rst Normal file
View file

@ -0,0 +1,30 @@
GPy.util.latent_space_visualizations.controllers package
========================================================
Submodules
----------
GPy.util.latent_space_visualizations.controllers.axis_event_controller module
-----------------------------------------------------------------------------
.. automodule:: GPy.util.latent_space_visualizations.controllers.axis_event_controller
:members:
:undoc-members:
:show-inheritance:
GPy.util.latent_space_visualizations.controllers.imshow_controller module
-------------------------------------------------------------------------
.. automodule:: GPy.util.latent_space_visualizations.controllers.imshow_controller
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.util.latent_space_visualizations.controllers
:members:
:undoc-members:
:show-inheritance:

17
doc/GPy.util.latent_space_visualizations.rst Normal file
View file

@ -0,0 +1,17 @@
GPy.util.latent_space_visualizations package
============================================
Subpackages
-----------
.. toctree::
GPy.util.latent_space_visualizations.controllers
Module contents
---------------
.. automodule:: GPy.util.latent_space_visualizations
:members:
:undoc-members:
:show-inheritance:

84
doc/GPy.util.rst
View file

@ -1,123 +1,133 @@
util Package
============
GPy.util package
================
:mod:`util` Package
-------------------
Subpackages
-----------
.. automodule:: GPy.util
:members:
:undoc-members:
:show-inheritance:
.. toctree::
:mod:`Tango` Module
-------------------
GPy.util.latent_space_visualizations
Submodules
----------
GPy.util.Tango module
---------------------
.. automodule:: GPy.util.Tango
:members:
:undoc-members:
:show-inheritance:
:mod:`classification` Module
----------------------------
GPy.util.classification module
------------------------------
.. automodule:: GPy.util.classification
:members:
:undoc-members:
:show-inheritance:
:mod:`datasets` Module
----------------------
GPy.util.datasets module
------------------------
.. automodule:: GPy.util.datasets
:members:
:undoc-members:
:show-inheritance:
:mod:`decorators` Module
------------------------
GPy.util.decorators module
--------------------------
.. automodule:: GPy.util.decorators
:members:
:undoc-members:
:show-inheritance:
:mod:`linalg` Module
--------------------
GPy.util.linalg module
----------------------
.. automodule:: GPy.util.linalg
:members:
:undoc-members:
:show-inheritance:
:mod:`misc` Module
------------------
GPy.util.misc module
--------------------
.. automodule:: GPy.util.misc
:members:
:undoc-members:
:show-inheritance:
:mod:`mocap` Module
-------------------
GPy.util.mocap module
---------------------
.. automodule:: GPy.util.mocap
:members:
:undoc-members:
:show-inheritance:
:mod:`pca` Module
-----------------
GPy.util.multioutput module
---------------------------
.. automodule:: GPy.util.pca
.. automodule:: GPy.util.multioutput
:members:
:undoc-members:
:show-inheritance:
:mod:`plot` Module
------------------
GPy.util.plot module
--------------------
.. automodule:: GPy.util.plot
:members:
:undoc-members:
:show-inheritance:
:mod:`plot_latent` Module
-------------------------
GPy.util.plot_latent module
---------------------------
.. automodule:: GPy.util.plot_latent
:members:
:undoc-members:
:show-inheritance:
:mod:`squashers` Module
-----------------------
GPy.util.squashers module
-------------------------
.. automodule:: GPy.util.squashers
:members:
:undoc-members:
:show-inheritance:
:mod:`univariate_Gaussian` Module
---------------------------------
GPy.util.univariate_Gaussian module
-----------------------------------
.. automodule:: GPy.util.univariate_Gaussian
:members:
:undoc-members:
:show-inheritance:
:mod:`visualize` Module
-----------------------
GPy.util.visualize module
-------------------------
.. automodule:: GPy.util.visualize
:members:
:undoc-members:
:show-inheritance:
:mod:`warping_functions` Module
-------------------------------
GPy.util.warping_functions module
---------------------------------
.. automodule:: GPy.util.warping_functions
:members:
:undoc-members:
:show-inheritance:
Module contents
---------------
.. automodule:: GPy.util
:members:
:undoc-members:
:show-inheritance:

4
doc/conf.py
View file

@ -83,6 +83,7 @@ print "finished importing"
#############################################################################
class Mock(object):
__all__ = []
def __init__(self, *args, **kwargs):
pass
@ -105,8 +106,7 @@ class Mock(object):
print "Mocking"
MOCK_MODULES = ['sympy',
'sympy.utilities', 'sympy.utilities.codegen', 'sympy.core.cache',
'sympy.core', 'sympy.parsing', 'sympy.parsing.sympy_parser',
'matplotlib.pyplot'
'sympy.core', 'sympy.parsing', 'sympy.parsing.sympy_parser'
]
for mod_name in MOCK_MODULES:
sys.modules[mod_name] = Mock()

2
setup.py
View file

@ -18,7 +18,7 @@ setup(name = 'GPy',
license = "BSD 3-clause",
keywords = "machine-learning gaussian-processes kernels",
url = "http://sheffieldml.github.com/GPy/",
packages = ['GPy', 'GPy.core', 'GPy.kern', 'GPy.util', 'GPy.models', 'GPy.inference', 'GPy.examples', 'GPy.likelihoods', 'GPy.testing'],
packages = ['GPy', 'GPy.core', 'GPy.kern', 'GPy.util', 'GPy.models', 'GPy.inference', 'GPy.examples', 'GPy.likelihoods', 'GPy.testing', 'GPy.util.latent_space_visualizations', 'GPy.util.latent_space_visualizations.controllers', 'GPy.likelihoods.noise_models', 'GPy.kern.parts', 'GPy.mappings'],
package_dir={'GPy': 'GPy'},
package_data = {'GPy': ['GPy/examples']},
py_modules = ['GPy.__init__'],