Added forced extraction of eggs (as we have a fair few non-py files and use the directory structure) added some files to MANIFEST and setup.py's package_data so its included upon distributing

GPy/util/config.py

@@ -8,9 +8,9 @@ config = ConfigParser.ConfigParser()
 # This is the default configuration file that always needs to be present.
 default_file = os.path.abspath(os.path.join(os.path.dirname( __file__ ), '..', 'defaults.cfg'))
 
-# These files are optional 
+# These files are optional
 # This specifies configurations that are typically specific to the machine (it is found alongside the GPy installation).
-local_file = os.path.abspath(os.path.join(os.path.dirname( __file__ ), '..', 'machine.cfg'))
+local_file = os.path.abspath(os.path.join(os.path.dirname( __file__ ), '..', 'installation.cfg'))
 
 # This specifies configurations specific to the user (it is found in the user home directory)
 home = os.getenv('HOME') or os.getenv('USERPROFILE')

MANIFEST.in

@@ -2,3 +2,7 @@ include *.txt
 recursive-include doc *.txt
 include *.md
 recursive-include doc *.md
+include *.cfg
+recursive-include doc *.cfg
+include *.json
+recursive-include doc *.json

setup.py

@@ -1,14 +1,16 @@
 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 
-import os
+#import os
 from setuptools import setup
 
 # Version number
 version = '0.4.6'
 
+from pkg_resources import Requirement, resource_string
 def read(fname):
-    return open(os.path.join(os.path.dirname(__file__), fname)).read()
+    return resource_string(Requirement.parse("GPy"),fname)
+    #return open(os.path.join(os.path.dirname(__file__), fname)).read()
 
 setup(name = 'GPy',
       version = version,
@@ -20,7 +22,7 @@ setup(name = 'GPy',
       url = "http://sheffieldml.github.com/GPy/",
       packages = ["GPy.models", "GPy.inference.optimization", "GPy.inference", "GPy.inference.latent_function_inference", "GPy.likelihoods", "GPy.mappings", "GPy.examples", "GPy.core.parameterization", "GPy.core", "GPy.testing", "GPy", "GPy.util", "GPy.kern", "GPy.kern._src.psi_comp", "GPy.kern._src", "GPy.plotting.matplot_dep.latent_space_visualizations.controllers", "GPy.plotting.matplot_dep.latent_space_visualizations", "GPy.plotting.matplot_dep", "GPy.plotting"],
       package_dir={'GPy': 'GPy'},
-      package_data = {'GPy': ['GPy/examples']},
+      package_data = {'GPy': ['defaults.cfg', 'installation.cfg', 'util/data_resources.json', 'util/football_teams.json']},
       py_modules = ['GPy.__init__'],
       long_description=read('README.md'),
       install_requires=['numpy>=1.6', 'scipy>=0.9','matplotlib>=1.1', 'nose'],
@@ -29,4 +31,5 @@ setup(name = 'GPy',
       },
       classifiers=[
       "License :: OSI Approved :: BSD License"],
+      zip_safe = False
       )