diff --git a/GPy/util/datasets.py b/GPy/util/datasets.py index d1250ae4..0f63a353 100644 --- a/GPy/util/datasets.py +++ b/GPy/util/datasets.py @@ -986,6 +986,7 @@ def singlecell_rna_seq_deng(dataset='singlecell_deng'): # Extract the tar file filename = os.path.join(dir_path, 'GSE45719_Raw.tar') with tarfile.open(filename, 'r') as files: + print "Extracting Archive {}...".format(files.name) data = None gene_info = None message = '' @@ -994,10 +995,9 @@ def singlecell_rna_seq_deng(dataset='singlecell_deng'): for i, file_info in enumerate(members): f = files.extractfile(file_info) inner = read_csv(f, sep='\t', header=0, compression='gzip', index_col=0) - sys.stdout.write(' '*(len(message)+1) + '\r') - sys.stdout.flush() + print ' '*(len(message)+1) + '\r', message = "{: >7.2%}: Extracting: {}".format(float(i+1)/overall, file_info.name[:20]+"...txt.gz") - sys.stdout.write(message) + print message, if data is None: data = inner.RPKM.to_frame() data.columns = [file_info.name[:-18]] @@ -1021,6 +1021,7 @@ def singlecell_rna_seq_deng(dataset='singlecell_deng'): sys.stdout.write(' '*len(message) + '\r') sys.stdout.flush() + print print "Read Archive {}".format(files.name) return data_details_return({'Y': data,