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added sparsegp with missing data

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Max Zwiessele 2014-02-18 15:52:33 +00:00
parent e96d40b4cc
commit d0c563ff0a
19 changed files with 572 additions and 325 deletions
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7
GPy/core/sparse_gp.py
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@ -2,12 +2,11 @@
# Licensed under the BSD 3-clause license (see LICENSE.txt)
import numpy as np
from ..util.linalg import mdot, tdot, symmetrify, backsub_both_sides, dtrtrs, dpotrs, dpotri
from ..util.linalg import mdot
from gp import GP
from parameterization.param import Param
from ..inference.latent_function_inference import varDTC
from GPy.inference.latent_function_inference import var_dtc
from .. import likelihoods
from GPy.util.misc import param_to_array
class SparseGP(GP):
"""
@ -37,7 +36,7 @@ class SparseGP(GP):
#pick a sensible inference method
if inference_method is None:
if isinstance(likelihood, likelihoods.Gaussian):
inference_method = varDTC.VarDTC()
inference_method = var_dtc.VarDTC()
else:
#inference_method = ??
raise NotImplementedError, "what to do what to do?"