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This commit is contained in:
James Hensman 2014-11-21 12:10:50 +00:00
parent f8fa672ea1
commit cdafff3861
12 changed files with 20 additions and 17 deletions
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2
GPy/models/bayesian_gplvm.py
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@ -1,4 +1,4 @@
# Copyright (c) 2012, GPy authors (see AUTHORS.txt).
# Copyright (c) 2012 - 2014 the GPy Austhors (see AUTHORS.txt)
# Licensed under the BSD 3-clause license (see LICENSE.txt)
import numpy as np

2
GPy/models/bayesian_gplvm_minibatch.py
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@ -1,4 +1,4 @@
# Copyright (c) 2012, GPy authors (see AUTHORS.txt).
# Copyright (c) 2012-2014, GPy authors (see AUTHORS.txt).
# Licensed under the BSD 3-clause license (see LICENSE.txt)
import numpy as np

2
GPy/models/bcgplvm.py
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@ -1,4 +1,4 @@
# ## Copyright (c) 2012, GPy authors (see AUTHORS.txt).
# Copyright (c) 2012-2014, GPy authors (see AUTHORS.txt).
# Licensed under the BSD 3-clause license (see LICENSE.txt)

1
GPy/models/gp_classification.py
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@ -1,4 +1,3 @@
# Copyright (c) 2013, Ricardo Andrade
# Copyright (c) 2013, the GPy Authors (see AUTHORS.txt)
# Licensed under the BSD 3-clause license (see LICENSE.txt)

2
GPy/models/gplvm.py
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@ -1,4 +1,4 @@
# ## Copyright (c) 2012, GPy authors (see AUTHORS.txt).
# Copyright (c) 2012-2014, GPy authors (see AUTHORS.txt).
# Licensed under the BSD 3-clause license (see LICENSE.txt)

2
GPy/util/block_matrices.py
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@ -1,3 +1,5 @@
# Copyright (c) 2012, GPy authors (see AUTHORS.txt).
# Licensed under the BSD 3-clause license (see LICENSE.txt)
import numpy as np
def get_blocks(A, blocksizes):

2
GPy/util/caching.py
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@ -1,3 +1,5 @@
# Copyright (c) 2012, GPy authors (see AUTHORS.txt).
# Licensed under the BSD 3-clause license (see LICENSE.txt)
from ..core.parameterization.observable import Observable
import collections, weakref

2
GPy/util/classification.py
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@ -1,3 +1,5 @@
# Copyright (c) 2012, GPy authors (see AUTHORS.txt).
# Licensed under the BSD 3-clause license (see LICENSE.txt)
import numpy as np
def conf_matrix(p,labels,names=['1','0'],threshold=.5,show=True):

9
GPy/util/debug.py
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@ -10,7 +10,7 @@ import numpy as np
def checkFinite(arr, name=None):
if name is None:
name = 'Array with ID['+str(id(arr))+']'
if np.any(np.logical_not(np.isfinite(arr))):
idx = np.where(np.logical_not(np.isfinite(arr)))[0]
print name+' at indices '+str(idx)+' have not finite values: '+str(arr[idx])+'!'
@ -21,16 +21,15 @@ def checkFullRank(m, tol=1e-10, name=None, force_check=False):
if name is None:
name = 'Matrix with ID['+str(id(m))+']'
assert len(m.shape)==2 and m.shape[0]==m.shape[1], 'The input of checkFullRank has to be a square matrix!'
if not force_check and m.shape[0]>=10000:
print 'The size of '+name+'is too big to check (>=10000)!'
return True
s = np.real(np.linalg.eigvals(m))
if s.min()/s.max()<tol:
print name+' is close to singlar!'
print 'The eigen values of '+name+' is '+str(s)
return False
return True

2
GPy/util/decorators.py
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@ -1,3 +1,5 @@
# Copyright (c) 2012, GPy authors (see AUTHORS.txt).
# Licensed under the BSD 3-clause license (see LICENSE.txt)
import numpy as np
from functools import wraps

9
GPy/util/diag.py
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@ -1,10 +1,5 @@
'''
.. module:: GPy.util.diag
.. moduleauthor:: Max Zwiessele <ibinbei@gmail.com>
'''
__updated__ = '2013-12-03'
# Copyright (c) 2012, GPy authors (see AUTHORS.txt).
# Licensed under the BSD 3-clause license (see LICENSE.txt)
import numpy as np

2
GPy/util/functions.py
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@ -1,3 +1,5 @@
# Copyright (c) 2012, GPy authors (see AUTHORS.txt).
# Licensed under the BSD 3-clause license (see LICENSE.txt)
import numpy as np
from scipy.special import erf, erfc, erfcx
import sys