diff --git a/pyproject.toml b/pyproject.toml deleted file mode 100644 index f2c5fb6b..00000000 --- a/pyproject.toml +++ /dev/null @@ -1,85 +0,0 @@ -[build-system] -requires = ["setuptools>=61.2", "numpy>=1.7",] -build-backend = "setuptools.build_meta" - -[project] -name = "GPy" -authors = [{name = "GPy Authors: https://github.com/SheffieldML/GPy/graphs/contributors", email = "gpy.authors@gmail.com"},] -license = {text = "BSD-3-Clause"} -description = "The Gaussian Process Toolbox" -readme = "README.md" -keywords = ["machine-learning", "gaussian-processes", "kernels",] -classifiers = [ - "License :: OSI Approved :: BSD License", - "Natural Language :: English", - "Operating System :: MacOS :: MacOS X", - "Operating System :: Microsoft :: Windows", - "Operating System :: POSIX :: Linux", - "Programming Language :: Python :: 3.9", - "Programming Language :: Python :: 3.10", - "Programming Language :: Python :: 3.11", - "Programming Language :: Python :: 3.12", - "Programming Language :: Python :: 3.13", - "Framework :: IPython", - "Intended Audience :: Science/Research", - "Intended Audience :: Developers", - "Topic :: Software Development", - "Topic :: Software Development :: Libraries :: Python Modules", -] -dependencies = [ - "numpy>=1.7", - "six", - "paramz>=0.9.6", - "cython>=0.29", - "scipy>=1.3.0,<=1.12.0" -] -dynamic = ["version",] - -[project.urls] -Homepage = "https://sheffieldml.github.io/GPy/" -Download = "https://github.com/SheffieldML/GPy/archive/refs/heads/devel.zip" -"Source Code" = "https://github.com/SheffieldML/GPy" -"Bug Tracker" = "https://github.com/SheffieldML/GPy/issues" - -[project.optional-dependencies] -docs = ["sphinx"] -optional = ["mpi4py", "ipython>=4.0.0"] -plotting = [ - "matplotlib>=3.3.4", - "plotly >= 1.8.6", -] -notebook = [ - "jupyter_client >= 4.0.6", - "ipywidgets >= 4.0.3", - "ipykernel >= 4.1.0", - "notebook >= 4.0.5", -] - -[tool.setuptools] -package-dir = {GPy = "GPy"} -py-modules = ["GPy.__init__"] -packages = [ - "GPy", - "GPy.core", - "GPy.core.parameterization", - "GPy.kern", - "GPy.kern.src", - "GPy.kern.src.psi_comp", - "GPy.models", - "GPy.inference", - "GPy.inference.optimization", - "GPy.inference.mcmc", - "GPy.inference.latent_function_inference", - "GPy.likelihoods", - "GPy.mappings", - "GPy.examples", - "GPy.testing", - "GPy.util", - "GPy.plotting", - "GPy.plotting.gpy_plot", - "GPy.plotting.matplot_dep", - "GPy.plotting.matplot_dep.controllers", - "GPy.plotting.plotly_dep", -] -include-package-data = true -#test-suite = "GPy.testing" diff --git a/setup.cfg b/setup.cfg index e6a4275a..9884e166 100644 --- a/setup.cfg +++ b/setup.cfg @@ -1,20 +1,3 @@ -[options] -test_suite = GPy.testing - -[options.extras_require] -docs = sphinx -optional = mpi4py; ipython>=4.0.0 -# matplotlib Version see github issue #955 -plotting = - matplotlib==3.3.4; python_version >= '3.6' - matplotlib==3.0.0; python_version < '3.6' - plotly >= 1.8.6 -notebook = - jupyter_client >= 4.0.6 - ipywidgets >= 4.0.3 - ipykernel >= 4.1.0 - notebook >= 4.0.5 - [bumpversion] current_version = 1.13.1 tag = True @@ -24,3 +7,7 @@ commit = True [upload_docs] upload-dir = doc/build/html + +[medatdata] +description-file = README.md + diff --git a/setup.py b/setup.py index d5f07e24..d63b6812 100644 --- a/setup.py +++ b/setup.py @@ -139,10 +139,103 @@ try: except ModuleNotFoundError: ext_mods = [] +install_requirements = [ + "numpy>=1.7", + "six", + "paramz>=0.9.6", + "cython>=0.29", +] +# 'some-pkg @ git+ssh://git@github.com/someorgname/pkg-repo-name@v1.1#egg=some-pkg', +matplotlib_version = "matplotlib==3.3.4" +install_requirements += ["scipy>=1.3.0,<=1.12.0"] + setup( + name="GPy", version=__version__, author=read_to_rst("AUTHORS.txt"), + author_email="gpy.authors@gmail.com", + description=("The Gaussian Process Toolbox"), + long_description=desc, + license="BSD 3-clause", + python_requires=">=3.9", + keywords="machine-learning gaussian-processes kernels", + url="https://sheffieldml.github.io/GPy/", + download_url="https://github.com/SheffieldML/GPy/archive/refs/heads/devel.zip", ext_modules=ext_mods, + packages=[ + "GPy", + "GPy.core", + "GPy.core.parameterization", + "GPy.kern", + "GPy.kern.src", + "GPy.kern.src.psi_comp", + "GPy.models", + "GPy.inference", + "GPy.inference.optimization", + "GPy.inference.mcmc", + "GPy.inference.latent_function_inference", + "GPy.likelihoods", + "GPy.mappings", + "GPy.examples", + "GPy.testing", + "GPy.util", + "GPy.plotting", + "GPy.plotting.gpy_plot", + "GPy.plotting.matplot_dep", + "GPy.plotting.matplot_dep.controllers", + "GPy.plotting.plotly_dep", + ], + package_dir={"GPy": "GPy"}, + # package_data = {'GPy': ['defaults.cfg', 'installation.cfg', + # 'util/data_resources.json', + # 'util/football_teams.json', + # 'testing/plotting_tests/baseline/*.png' + # ]}, + # data_files=[('GPy/testing/plotting_tests/baseline', 'testing/plotting_tests/baseline/*.png'), + # ('GPy/testing/', 'GPy/testing/pickle_test.pickle'), + # ], + include_package_data=True, + py_modules=["GPy.__init__"], + test_suite="GPy.testing", + setup_requires=["numpy>=1.7"], + install_requires=install_requirements, + extras_require={ + "docs": ["sphinx"], + "optional": [ + "mpi4py", + "ipython>=4.0.0", + ], + # matplotlib Version see github issue #955 + "plotting": [matplotlib_version, "plotly >= 1.8.6"], + "notebook": [ + "jupyter_client >= 4.0.6", + "ipywidgets >= 4.0.3", + "ipykernel >= 4.1.0", + "notebook >= 4.0.5", + ], + "dev": ["pytest", "matplotlib", "pods"], + }, + classifiers=[ + "License :: OSI Approved :: BSD License", + "Natural Language :: English", + "Operating System :: MacOS :: MacOS X", + "Operating System :: Microsoft :: Windows", + "Operating System :: POSIX :: Linux", + "Programming Language :: Python :: 3.5", + "Programming Language :: Python :: 3.6", + "Programming Language :: Python :: 3.7", + "Programming Language :: Python :: 3.8", + "Programming Language :: Python :: 3.9", + "Framework :: IPython", + "Intended Audience :: Science/Research", + "Intended Audience :: Developers", + "Topic :: Software Development", + "Topic :: Software Development :: Libraries :: Python Modules", + ], + project_urls={ + "Source Code": "https://github.com/SheffieldML/GPy", + "Bug Tracker": "https://github.com/SheffieldML/GPy/issues", + }, )