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model re compilation added

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Max Zwiessele 2013-04-29 16:21:38 +01:00
parent 50a68e1a65
commit aaaa1b5251
1 changed files with 95 additions and 93 deletions
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26
GPy/core/model.py
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@ -2,17 +2,19 @@
# Licensed under the BSD 3-clause license (see LICENSE.txt)
import numpy as np
from scipy import optimize
import sys, pdb
import multiprocessing as mp
from GPy.util.misc import opt_wrapper
#import numdifftools as ndt
from parameterised import parameterised, truncate_pad
import priors
from ..util.linalg import jitchol
from ..inference import optimization
from .. import likelihoods
from ..inference import optimization
from ..util.linalg import jitchol
from GPy.util.misc import opt_wrapper
from parameterised import parameterised, truncate_pad
from scipy import optimize
import multiprocessing as mp
import numpy as np
import priors
import re
import sys
import pdb
# import numdifftools as ndt
class model(parameterised):
def __init__(self):
@ -214,9 +216,9 @@ class model(parameterised):
for s in positive_strings:
for i in self.grep_param_names(s):
if not (i in currently_constrained):
to_make_positive.append(param_names[i])
to_make_positive.append(re.escape(param_names[i]))
if warn:
print "Warning! constraining %s postive"%name
print "Warning! constraining %s positive" % s
if len(to_make_positive):
self.constrain_positive('(' + '|'.join(to_make_positive) + ')')