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[datasets] added singlecell dataset

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Max Zwiessele 2014-05-09 14:05:57 +01:00
parent 675d498794
commit a717c03866
3 changed files with 22 additions and 410 deletions
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14
GPy/util/datasets.py
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@ -717,7 +717,19 @@ def hapmap3(data_set='hapmap3'):
inandf=inandf,
populations=populations)
return hapmap
def singlecell(data_set='singlecell'):
if not data_available(data_set):
download_data(data_set)
dirpath = os.path.join(data_path, data_set)
data = np.loadtxt(os.path.join(dirpath, 'singlecell.csv'), delimiter=",", dtype=str)
genes = data[0, 1:]
labels = data[1:, 0]
Y = np.array(data[1:, 1:], dtype=float)
return data_details_return({'Y': Y, 'info' : "qPCR Singlecell experiment in Mouse, measuring 48 gene expressions in 1-64 cell states. The labels have been created as in Guo et al. [2010]",
'genes':genes, 'labels':labels,
}, data_set)
def swiss_roll_1000():
return swiss_roll(num_samples=1000)