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swiss_roll example changes

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Max Zwiessele 2013-05-16 16:12:26 +01:00
parent 66b96cb3d3
commit a3be00f619
1 changed files with 3 additions and 3 deletions
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6
GPy/examples/dimensionality_reduction.py
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@ -68,8 +68,8 @@ def swiss_roll(optimize=True, N=1000, M=15, Q=4, sigma=.2, plot=False):
data = swiss_roll_generated(N=N, sigma=sigma) data = swiss_roll_generated(N=N, sigma=sigma)
Y = data['Y'] Y = data['Y']
Y -= Y.mean(0) Y -= Y.mean()
Y /= Y.std(0) Y /= Y.std()
t = data['t'] t = data['t']
c = data['colors'] c = data['colors']
@ -102,7 +102,7 @@ def swiss_roll(optimize=True, N=1000, M=15, Q=4, sigma=.2, plot=False):
(1 - var))) + .001 (1 - var))) + .001
Z = np.random.permutation(X)[:M] Z = np.random.permutation(X)[:M]
kernel = GPy.kern.rbf(Q, ARD=True) + GPy.kern.bias(Q, np.exp(-2)) + GPy.kern.white(Q, 2) kernel = GPy.kern.rbf(Q, ARD=True) + GPy.kern.bias(Q, np.exp(-2)) + GPy.kern.white(Q, np.exp(-2))
m = Bayesian_GPLVM(Y, Q, X=X, X_variance=S, M=M, Z=Z, kernel=kernel) m = Bayesian_GPLVM(Y, Q, X=X, X_variance=S, M=M, Z=Z, kernel=kernel)
m.data_colors = c m.data_colors = c