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Cleaning up

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This commit is contained in:
Alan Saul 2013-02-08 18:46:40 +00:00
parent 59f767e1af
commit a272de6cdb
2 changed files with 6 additions and 46 deletions
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36
doc/conf.py
View file

@ -39,8 +39,6 @@ except ImportError:
print "sys.path:", sys.path print "sys.path:", sys.path
#sys.path.insert(0, os.getcwd() + "/..")
# If extensions (or modules to document with autodoc) are in another directory, # If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the # add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here. # documentation root, use os.path.abspath to make it absolute, like shown here.
@ -48,7 +46,6 @@ print "sys.path:", sys.path
#print "sys.path.after:", sys.path #print "sys.path.after:", sys.path
# If your extensions are in another directory, add it here. If the directory # If your extensions are in another directory, add it here. If the directory
# is relative to the documentation root, use os.path.abspath to make it # is relative to the documentation root, use os.path.abspath to make it
# absolute, like shown here. # absolute, like shown here.
@ -57,7 +54,6 @@ sys.path.append(os.path.abspath('sphinxext'))
# If extensions (or modules to document with autodoc) are in another directory, # If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the # add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here. # documentation root, use os.path.abspath to make it absolute, like shown here.
#sys.path.insert(0, os.path.abspath('.'))
#sys.path.insert(0, os.path.abspath('./sphinxext')) #sys.path.insert(0, os.path.abspath('./sphinxext'))
# -- General configuration ----------------------------------------------------- # -- General configuration -----------------------------------------------------
@ -76,9 +72,6 @@ extensions = ['sphinx.ext.autodoc',
'ipython_directive', 'ipython_directive',
'ipython_console_highlighting' 'ipython_console_highlighting'
#'matplotlib.sphinxext.plot_directive' #'matplotlib.sphinxext.plot_directive'
#'mathmpl',
#'only_directives',
#'plot_directive'
] ]
plot_formats = [('png', 80), ('pdf', 50)] plot_formats = [('png', 80), ('pdf', 50)]
@ -120,7 +113,6 @@ on_rtd = os.environ.get('READTHEDOCS', None) == 'True'
on_rtd = True on_rtd = True
if on_rtd: if on_rtd:
print "I am here"
sys.path.append(os.path.abspath('../GPy')) sys.path.append(os.path.abspath('../GPy'))
import subprocess import subprocess
@ -134,15 +126,12 @@ if on_rtd:
proc = subprocess.Popen("sphinx-apidoc -f -o . ../GPy", stdout=subprocess.PIPE, shell=True) proc = subprocess.Popen("sphinx-apidoc -f -o . ../GPy", stdout=subprocess.PIPE, shell=True)
(out, err) = proc.communicate() (out, err) = proc.communicate()
print "program output:", out print "program output:", out
proc = subprocess.Popen("whereis numpy", stdout=subprocess.PIPE, shell=True) #proc = subprocess.Popen("whereis numpy", stdout=subprocess.PIPE, shell=True)
(out, err) = proc.communicate() #(out, err) = proc.communicate()
print "program output:", out #print "program output:", out
print "MATPLOTLIB BABY" #proc = subprocess.Popen("whereis matplotlib", stdout=subprocess.PIPE, shell=True)
proc = subprocess.Popen("whereis matplotlib", stdout=subprocess.PIPE, shell=True) #(out, err) = proc.communicate()
(out, err) = proc.communicate() #print "program output:", out
print "program output:", out
#os.system("cd ..")
#os.system("cd ./docs")
print "Compiled files" print "Compiled files"
@ -406,17 +395,4 @@ epub_copyright = u'2013, Author'
# Allow duplicate toc entries. # Allow duplicate toc entries.
#epub_tocdup = True #epub_tocdup = True
#############################################################################
#
# Include constructors in all the docs
# Got this method from:
# http://stackoverflow.com/questions/5599254/how-to-use-sphinxs-autodoc-to-document-a-classs-init-self-method
#def skip(app, what, name, obj, skip, options):
#if name == "__init__":
#return False
#return skip
#def setup(app):
#app.connect("autodoc-skip-member", skip)
autodoc_member_order = "source" autodoc_member_order = "source"

16
doc/tuto_GP_regression.rst
View file

@ -2,22 +2,6 @@
Gaussian process regression tutorial Gaussian process regression tutorial
************************************* *************************************
.. ipython:: python
print "Hello world"
X = [[1, 10], [1, 20], [1, -2]]
.. plot::
import matplotlib.pyplot as plt
import numpy as np
x = np.random.randn(1000)
plt.hist( x, 20)
plt.grid()
plt.title(r'Normal: $\mu=%.2f, \sigma=%.2f$'%(x.mean(), x.std()))
plt.show()
We will see in this tutorial the basics for building a 1 dimensional and a 2 dimensional Gaussian process regression model, also known as a kriging model. We will see in this tutorial the basics for building a 1 dimensional and a 2 dimensional Gaussian process regression model, also known as a kriging model.
We first import the libraries we will need: :: We first import the libraries we will need: ::