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Merge branch 'master' of github.com:SheffieldML/GPy

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Nicolo Fusi 2013-03-11 12:41:12 +00:00
commit 945d618e98
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doc/GPy.examples.rst
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@ -73,6 +73,22 @@ examples Package
:undoc-members:
:show-inheritance:
:mod:`tuto_GP_regression` Module
--------------------------------
.. automodule:: GPy.examples.tuto_GP_regression
:members:
:undoc-members:
:show-inheritance:
:mod:`tuto_kernel_overview` Module
----------------------------------
.. automodule:: GPy.examples.tuto_kernel_overview
:members:
:undoc-members:
:show-inheritance:
:mod:`uncertain_input_GP_regression_demo` Module
------------------------------------------------

28
doc/GPy.kern.rst
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@ -49,6 +49,14 @@ kern Package
:undoc-members:
:show-inheritance:
:mod:`coregionalise` Module
---------------------------
.. automodule:: GPy.kern.coregionalise
:members:
:undoc-members:
:show-inheritance:
:mod:`exponential` Module
-------------------------
@ -113,18 +121,18 @@ kern Package
:undoc-members:
:show-inheritance:
:mod:`product` Module
---------------------
:mod:`prod` Module
------------------
.. automodule:: GPy.kern.product
.. automodule:: GPy.kern.prod
:members:
:undoc-members:
:show-inheritance:
:mod:`product_orthogonal` Module
--------------------------------
:mod:`prod_orthogonal` Module
-----------------------------
.. automodule:: GPy.kern.product_orthogonal
.. automodule:: GPy.kern.prod_orthogonal
:members:
:undoc-members:
:show-inheritance:
@ -145,6 +153,14 @@ kern Package
:undoc-members:
:show-inheritance:
:mod:`symmetric` Module
-----------------------
.. automodule:: GPy.kern.symmetric
:members:
:undoc-members:
:show-inheritance:
:mod:`sympykern` Module
-----------------------

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doc/kernel_implementation.rst
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@ -3,15 +3,36 @@
List of implemented kernels
***************************
The :math:`\checkmark` symbol represents the functions that have been implemented for each kernel.
The following table shows the implemented kernels in GPy and gives the details of the implemented function for each kernel.
.. |tick|
==================== =========== ====== ======= =========== =============== ======= =========== ====== ====== =======
NAME get/set K Kdiag dK_dtheta dKdiag_dtheta dK_dX dKdiag_dX psi0 psi1 psi2
==================== =========== ====== ======= =========== =============== ======= =========== ====== ====== =======
bias |tick| |tick| |tick| |tick| |tick| |tick| |tick| |tick| |tick| |tick|
-------------------- ----------- ------ ------- ----------- --------------- ------- ----------- ------ ------ -------
Brownian |tick| |tick| |tick| |tick| |tick| |tick| |tick|
-------------------- ----------- ------ ------- ----------- --------------- ------- ----------- ------ ------ -------
exponential |tick| |tick| |tick| |tick| |tick| |tick| |tick|
-------------------- ----------- ------ ------- ----------- --------------- ------- ----------- ------ ------ -------
finite_dimensional |tick| |tick| |tick| |tick| |tick|
-------------------- ----------- ------ ------- ----------- --------------- ------- ----------- ------ ------ -------
linear |tick| |tick| |tick| |tick| |tick| |tick| |tick| |tick| |tick|
-------------------- ----------- ------ ------- ----------- --------------- ------- ----------- ------ ------ -------
Matern32 |tick| |tick| |tick| |tick| |tick| |tick| |tick|
-------------------- ----------- ------ ------- ----------- --------------- ------- ----------- ------ ------ -------
Matern52 |tick| |tick| |tick| |tick| |tick| |tick| |tick|
-------------------- ----------- ------ ------- ----------- --------------- ------- ----------- ------ ------ -------
periodic_exponential |tick| |tick| |tick| |tick| |tick|
-------------------- ----------- ------ ------- ----------- --------------- ------- ----------- ------ ------ -------
periodic_Matern32 |tick| |tick| |tick| |tick| |tick|
-------------------- ----------- ------ ------- ----------- --------------- ------- ----------- ------ ------ -------
periodic_Matern52 |tick| |tick| |tick| |tick| |tick|
-------------------- ----------- ------ ------- ----------- --------------- ------- ----------- ------ ------ -------
rbf |tick| |tick| |tick| |tick| |tick| |tick| |tick| |tick| |tick| |tick|
-------------------- ----------- ------ ------- ----------- --------------- ------- ----------- ------ ------ -------
spline |tick| |tick| |tick| |tick| |tick| |tick|
-------------------- ----------- ------ ------- ----------- --------------- ------- ----------- ------ ------ -------
white |tick| |tick| |tick| |tick| |tick| |tick| |tick| |tick| |tick| |tick|
==================== =========== ====== ======= =========== =============== ======= =========== ====== ====== =======
.. |tick| image:: tick.png
====== =========== === ======= =========== =============== ======= =========== ====== ====== =======
NAME get/set K Kdiag dK_dtheta dKdiag_dtheta dK_dX dKdiag_dX psi0 psi1 psi2
====== =========== === ======= =========== =============== ======= =========== ====== ====== =======
rbf \\checkmark y
====== =========== === ======= =========== =============== ======= =========== ====== ====== =======
.. |tick| image:: Figures/tick.png

2
doc/tuto_kernel_overview.rst
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@ -39,7 +39,7 @@ return::
Implemented kernels
===================
Many kernels are already implemented in GPy. A comprehensive list can be found `here <kernel_implementation.html>`_ . The following figure gives a summary of most of them:
Many kernels are already implemented in GPy. A comprehensive list can be found `here <kernel_implementation.html>`_ and the following figure gives a summary of most of them:
.. figure:: Figures/tuto_kern_overview_allkern.png
:align: center