mirror of
https://github.com/SheffieldML/GPy.git
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Merge branch 'master' of github.com:SheffieldML/GPy
This commit is contained in:
Nicolas
commit
9201bb8a89
4 changed files with 217 additions and 2 deletions
25
GPy/examples/unsupervised.py
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25
GPy/examples/unsupervised.py
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"""
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Usupervised learning with Gaussian Processes.
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"""
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import pylab as pb
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import numpy as np
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import GPy
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######################################
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## Oil data subsampled to 100 points.
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def oil_100():
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data = GPy.util.datasets.oil_100()
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# create simple GP model
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m = GPy.models.GPLVM(data['X'], 2)
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# optimize
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m.ensure_default_constraints()
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m.optimize()
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# plot
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print(m)
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return m
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@ -288,5 +288,5 @@ epub_copyright = u'2013, Author'
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on_rtd = os.environ.get('READTHEDOCS', None) == 'True'
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on_rtd = os.environ.get('READTHEDOCS', None) == 'True'
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if on_rtd:
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if on_rtd:
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os.system("pwd")
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os.system("sphinx-apidoc -f -o . ../GPy")
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os.system("sphinx-apidoc -f -o . ../GPy")
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#sphinx-apidoc . -o doc -H 'GPy' -f
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190
doc/make.bat
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190
doc/make.bat
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@ -0,0 +1,190 @@
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@ECHO OFF
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REM Command file for Sphinx documentation
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if "%SPHINXBUILD%" == "" (
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set SPHINXBUILD=sphinx-build
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)
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set BUILDDIR=_build
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set ALLSPHINXOPTS=-d %BUILDDIR%/doctrees %SPHINXOPTS% .
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set I18NSPHINXOPTS=%SPHINXOPTS% .
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if NOT "%PAPER%" == "" (
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set ALLSPHINXOPTS=-D latex_paper_size=%PAPER% %ALLSPHINXOPTS%
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set I18NSPHINXOPTS=-D latex_paper_size=%PAPER% %I18NSPHINXOPTS%
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)
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if "%1" == "" goto help
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if "%1" == "help" (
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:help
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echo.Please use `make ^<target^>` where ^<target^> is one of
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echo. html to make standalone HTML files
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echo. dirhtml to make HTML files named index.html in directories
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echo. singlehtml to make a single large HTML file
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echo. pickle to make pickle files
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echo. json to make JSON files
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echo. htmlhelp to make HTML files and a HTML help project
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echo. qthelp to make HTML files and a qthelp project
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echo. devhelp to make HTML files and a Devhelp project
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echo. epub to make an epub
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echo. latex to make LaTeX files, you can set PAPER=a4 or PAPER=letter
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echo. text to make text files
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echo. man to make manual pages
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echo. texinfo to make Texinfo files
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echo. gettext to make PO message catalogs
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echo. changes to make an overview over all changed/added/deprecated items
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echo. linkcheck to check all external links for integrity
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echo. doctest to run all doctests embedded in the documentation if enabled
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goto end
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)
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if "%1" == "clean" (
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for /d %%i in (%BUILDDIR%\*) do rmdir /q /s %%i
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del /q /s %BUILDDIR%\*
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goto end
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)
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if "%1" == "html" (
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%SPHINXBUILD% -b html %ALLSPHINXOPTS% %BUILDDIR%/html
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if errorlevel 1 exit /b 1
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echo.
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echo.Build finished. The HTML pages are in %BUILDDIR%/html.
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goto end
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)
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if "%1" == "dirhtml" (
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%SPHINXBUILD% -b dirhtml %ALLSPHINXOPTS% %BUILDDIR%/dirhtml
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if errorlevel 1 exit /b 1
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echo.
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echo.Build finished. The HTML pages are in %BUILDDIR%/dirhtml.
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goto end
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)
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if "%1" == "singlehtml" (
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%SPHINXBUILD% -b singlehtml %ALLSPHINXOPTS% %BUILDDIR%/singlehtml
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if errorlevel 1 exit /b 1
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echo.
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echo.Build finished. The HTML pages are in %BUILDDIR%/singlehtml.
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goto end
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)
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if "%1" == "pickle" (
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%SPHINXBUILD% -b pickle %ALLSPHINXOPTS% %BUILDDIR%/pickle
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if errorlevel 1 exit /b 1
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echo.
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echo.Build finished; now you can process the pickle files.
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goto end
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)
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if "%1" == "json" (
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%SPHINXBUILD% -b json %ALLSPHINXOPTS% %BUILDDIR%/json
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if errorlevel 1 exit /b 1
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echo.
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echo.Build finished; now you can process the JSON files.
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goto end
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)
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if "%1" == "htmlhelp" (
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%SPHINXBUILD% -b htmlhelp %ALLSPHINXOPTS% %BUILDDIR%/htmlhelp
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if errorlevel 1 exit /b 1
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echo.
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echo.Build finished; now you can run HTML Help Workshop with the ^
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.hhp project file in %BUILDDIR%/htmlhelp.
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goto end
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)
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if "%1" == "qthelp" (
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%SPHINXBUILD% -b qthelp %ALLSPHINXOPTS% %BUILDDIR%/qthelp
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if errorlevel 1 exit /b 1
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echo.
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echo.Build finished; now you can run "qcollectiongenerator" with the ^
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.qhcp project file in %BUILDDIR%/qthelp, like this:
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echo.^> qcollectiongenerator %BUILDDIR%\qthelp\GPy.qhcp
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echo.To view the help file:
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echo.^> assistant -collectionFile %BUILDDIR%\qthelp\GPy.ghc
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goto end
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)
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if "%1" == "devhelp" (
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%SPHINXBUILD% -b devhelp %ALLSPHINXOPTS% %BUILDDIR%/devhelp
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if errorlevel 1 exit /b 1
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echo.
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echo.Build finished.
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goto end
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)
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if "%1" == "epub" (
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%SPHINXBUILD% -b epub %ALLSPHINXOPTS% %BUILDDIR%/epub
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if errorlevel 1 exit /b 1
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echo.
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echo.Build finished. The epub file is in %BUILDDIR%/epub.
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goto end
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)
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if "%1" == "latex" (
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%SPHINXBUILD% -b latex %ALLSPHINXOPTS% %BUILDDIR%/latex
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if errorlevel 1 exit /b 1
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echo.
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echo.Build finished; the LaTeX files are in %BUILDDIR%/latex.
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goto end
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)
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if "%1" == "text" (
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%SPHINXBUILD% -b text %ALLSPHINXOPTS% %BUILDDIR%/text
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if errorlevel 1 exit /b 1
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echo.
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echo.Build finished. The text files are in %BUILDDIR%/text.
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goto end
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)
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if "%1" == "man" (
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%SPHINXBUILD% -b man %ALLSPHINXOPTS% %BUILDDIR%/man
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if errorlevel 1 exit /b 1
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echo.
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echo.Build finished. The manual pages are in %BUILDDIR%/man.
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goto end
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)
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if "%1" == "texinfo" (
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%SPHINXBUILD% -b texinfo %ALLSPHINXOPTS% %BUILDDIR%/texinfo
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if errorlevel 1 exit /b 1
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echo.
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echo.Build finished. The Texinfo files are in %BUILDDIR%/texinfo.
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goto end
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)
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if "%1" == "gettext" (
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%SPHINXBUILD% -b gettext %I18NSPHINXOPTS% %BUILDDIR%/locale
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if errorlevel 1 exit /b 1
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echo.
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echo.Build finished. The message catalogs are in %BUILDDIR%/locale.
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goto end
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)
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if "%1" == "changes" (
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%SPHINXBUILD% -b changes %ALLSPHINXOPTS% %BUILDDIR%/changes
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if errorlevel 1 exit /b 1
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echo.
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echo.The overview file is in %BUILDDIR%/changes.
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goto end
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)
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if "%1" == "linkcheck" (
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%SPHINXBUILD% -b linkcheck %ALLSPHINXOPTS% %BUILDDIR%/linkcheck
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if errorlevel 1 exit /b 1
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echo.
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echo.Link check complete; look for any errors in the above output ^
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or in %BUILDDIR%/linkcheck/output.txt.
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goto end
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)
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if "%1" == "doctest" (
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%SPHINXBUILD% -b doctest %ALLSPHINXOPTS% %BUILDDIR%/doctest
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if errorlevel 1 exit /b 1
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echo.
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echo.Testing of doctests in the sources finished, look at the ^
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|
results in %BUILDDIR%/doctest/output.txt.
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goto end
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)
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:end
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2
setup.py
2
setup.py
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@ -26,7 +26,7 @@ setup(name = 'GPy',
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long_description=read('README.md'),
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long_description=read('README.md'),
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#ext_modules = [Extension(name = 'GPy.kern.lfmUpsilonf2py',
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#ext_modules = [Extension(name = 'GPy.kern.lfmUpsilonf2py',
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# sources = ['GPy/kern/src/lfmUpsilonf2py.f90'])],
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# sources = ['GPy/kern/src/lfmUpsilonf2py.f90'])],
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install_requires=['numpy>=1.6', 'scipy','matplotlib>=1.1'],
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install_requires=['sympy', 'numpy>=1.6', 'scipy>=0.9','matplotlib>=1.1'],
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setup_requires=['sphinx'],
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setup_requires=['sphinx'],
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cmdclass = {'build_sphinx': BuildDoc},
|
cmdclass = {'build_sphinx': BuildDoc},
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classifiers=[
|
classifiers=[
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|
|
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