diff --git a/GPy/examples/dimensionality_reduction.py b/GPy/examples/dimensionality_reduction.py index 4638d9f7..a9444347 100644 --- a/GPy/examples/dimensionality_reduction.py +++ b/GPy/examples/dimensionality_reduction.py @@ -266,7 +266,7 @@ def bgplvm_simulation(optimize=True, verbose=1, Y = Ylist[0] k = kern.linear(Q, ARD=True) m = BayesianGPLVM(Y, Q, init="PCA", num_inducing=num_inducing, kernel=k) - m.X_variance = m.X_variance * .05 + m.X_variance = m.X_variance * .1 m['noise'] = Y.var() / 100. if optimize: @@ -289,12 +289,11 @@ def mrd_simulation(optimize=True, verbose=True, plot=True, plot_sim=True, **kw): k = kern.linear(Q, ARD=True)# + kern.bias(Q, _np.exp(-2)) + kern.white(Q, _np.exp(-2)) m = MRD(likelihood_list, input_dim=Q, num_inducing=num_inducing, kernels=k, initx="", initz='permute', **kw) - m.X_variance = m.X_variance * .05 m.ensure_default_constraints() for i, bgplvm in enumerate(m.bgplvms): m['{}_noise'.format(i)] = bgplvm.likelihood.Y.var() / 500. - + bgplvm.X_variance = bgplvm.X_variance * .1 if optimize: print "Optimizing Model:" m.optimize(messages=verbose, max_iters=8e3, gtol=.1)