Heaviside transformation fixed

This commit is contained in:
Ricardo 2013-09-16 16:55:12 +01:00
parent 42589a657a
commit 7e4dca7e3a
4 changed files with 37 additions and 7 deletions

View file

@ -166,3 +166,35 @@ def FITC_crescent_data(num_inducing=10, seed=default_seed):
print(m)
m.plot()
return m
def toy_heavyside(seed=default_seed):
"""
Simple 1D classification example using a heavy side gp transformation
:param seed : seed value for data generation (default is 4).
:type seed: int
"""
data = GPy.util.datasets.toy_linear_1d_classification(seed=seed)
Y = data['Y'][:, 0:1]
Y[Y.flatten() == -1] = 0
# Model definition
noise_model = GPy.likelihoods.binomial(GPy.likelihoods.noise_models.gp_transformations.Heaviside())
likelihood = GPy.likelihoods.EP(Y,noise_model)
m = GPy.models.GPClassification(data['X'], likelihood=likelihood)
# Optimize
m.update_likelihood_approximation()
# Parameters optimization:
m.optimize()
#m.pseudo_EM()
# Plot
fig, axes = pb.subplots(2,1)
m.plot_f(ax=axes[0])
m.plot(ax=axes[1])
print(m)
return m