diff --git a/GPy/testing/baseline/coverage_3d_plot.png b/GPy/testing/baseline/coverage_3d_plot.png deleted file mode 100644 index 62638b03..00000000 Binary files a/GPy/testing/baseline/coverage_3d_plot.png and /dev/null differ diff --git a/GPy/testing/gpy_kernels_state_space_tests.py b/GPy/testing/gpy_kernels_state_space_tests.py index 034b58bb..fb5fa228 100644 --- a/GPy/testing/gpy_kernels_state_space_tests.py +++ b/GPy/testing/gpy_kernels_state_space_tests.py @@ -28,7 +28,7 @@ class StateSpaceKernelsTests(np.testing.TestCase): kalman_filter_type=kalman_filter_type, use_cython=use_cython) - m1.likelihood[:] = Y.var()/10. + m1.likelihood[:] = Y.var()/100. if check_gradients: self.assertTrue(m1.checkgrad()) @@ -95,9 +95,9 @@ class StateSpaceKernelsTests(np.testing.TestCase): plot = False, points_num=50, x_interval = (0, 20), random=True) X.shape = (X.shape[0],1); Y.shape = (Y.shape[0],1) - ss_kernel = GPy.kern.sde_RBF(1, Y.var(), X.ptp()/2., active_dims=[0,]) - gp_kernel = GPy.kern.RBF(1, Y.var(), X.ptp()/2., active_dims=[0,]) - + ss_kernel = GPy.kern.sde_RBF(1, 110., 1.5, active_dims=[0,]) + gp_kernel = GPy.kern.RBF(1, 110., 1.5, active_dims=[0,]) + self.run_for_model(X, Y, ss_kernel, check_gradients=True, predict_X=X, gp_kernel=gp_kernel, @@ -202,17 +202,18 @@ class StateSpaceKernelsTests(np.testing.TestCase): # Sine data <- Y = Y + Y1 + Y -= Y.mean() X.shape = (X.shape[0],1); Y.shape = (Y.shape[0],1) def get_new_kernels(): - ss_kernel = GPy.kern.sde_Linear(1,X) + GPy.kern.sde_StdPeriodic(1,active_dims=[0,]) - ss_kernel.std_periodic.lengthscale.constrain_bounded(0.25, 1000) - ss_kernel.std_periodic.period.constrain_bounded(3, 8) + ss_kernel = GPy.kern.sde_Linear(1,X,variances=1) + GPy.kern.sde_StdPeriodic(1,period=5.0, variance=300, lengthscale=3., active_dims=[0,]) + #ss_kernel.std_periodic.lengthscale.constrain_bounded(0.25, 1000) + #ss_kernel.std_periodic.period.constrain_bounded(3, 8) - gp_kernel = GPy.kern.Linear(1) + GPy.kern.StdPeriodic(1,active_dims=[0,]) - gp_kernel.std_periodic.lengthscale.constrain_bounded(0.25, 1000) - gp_kernel.std_periodic.period.constrain_bounded(3, 8) + gp_kernel = GPy.kern.Linear(1,variances=1) + GPy.kern.StdPeriodic(1,period=5.0, variance=300, lengthscale=3., active_dims=[0,]) + #gp_kernel.std_periodic.lengthscale.constrain_bounded(0.25, 1000) + #gp_kernel.std_periodic.period.constrain_bounded(3, 8) return ss_kernel, gp_kernel