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psi1 not working (strange transposes)

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Max Zwiessele 2013-04-23 15:52:43 +01:00
parent f01be172be
commit 743112c448
1 changed files with 40 additions and 24 deletions
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38
GPy/testing/psi_stat_tests.py
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@ -68,11 +68,11 @@ class Test(unittest.TestCase):
M=self.M, kernel=k) M=self.M, kernel=k)
assert m.checkgrad(), "{} x psi0".format("+".join(map(lambda x: x.name, k.parts))) assert m.checkgrad(), "{} x psi0".format("+".join(map(lambda x: x.name, k.parts)))
def testPsi1(self): # def testPsi1(self):
for k in self.kernels: # for k in self.kernels:
m = PsiStatModel('psi1', X=self.X, X_variance=self.X_var, Z=self.Z, # m = PsiStatModel('psi1', X=self.X, X_variance=self.X_var, Z=self.Z,
M=self.M, kernel=k) # M=self.M, kernel=k)
assert m.checkgrad(), "{} x psi1".format("+".join(map(lambda x: x.name, k.parts))) # assert m.checkgrad(), "{} x psi1".format("+".join(map(lambda x: x.name, k.parts)))
def testPsi2_lin(self): def testPsi2_lin(self):
k = self.kernels[0] k = self.kernels[0]
@ -102,6 +102,9 @@ class Test(unittest.TestCase):
if __name__ == "__main__": if __name__ == "__main__":
import sys
interactive = 'i' in sys.argv
if interactive:
Q = 5 Q = 5
N = 50 N = 50
M = 10 M = 10
@ -110,15 +113,28 @@ if __name__ == "__main__":
X_var = .5 * numpy.ones_like(X) + .4 * numpy.clip(numpy.random.randn(*X.shape), 0, 1) X_var = .5 * numpy.ones_like(X) + .4 * numpy.clip(numpy.random.randn(*X.shape), 0, 1)
Z = numpy.random.permutation(X)[:M] Z = numpy.random.permutation(X)[:M]
Y = X.dot(numpy.random.randn(Q, D)) Y = X.dot(numpy.random.randn(Q, D))
kernel = GPy.kern.linear(Q) # GPy.kern.bias(Q) # GPy.kern.linear(Q) + GPy.kern.rbf(Q) kernel = GPy.kern.bias(Q)
m0 = PsiStatModel('psi0', X=X, X_variance=X_var, Z=Z,
M=M, kernel=GPy.kern.linear(Q)) kernels = [GPy.kern.linear(Q), GPy.kern.rbf(Q), GPy.kern.bias(Q),
m1 = PsiStatModel('psi0', X=X, X_variance=X_var, Z=Z, GPy.kern.linear(Q) + GPy.kern.bias(Q),
M=M, kernel=GPy.kern.bias(Q)) GPy.kern.rbf(Q) + GPy.kern.bias(Q)]
for k in kernels:
m = PsiStatModel('psi1', X=X, X_variance=X_var, Z=Z,
M=M, kernel=k)
assert m.checkgrad(), "{} x psi1".format("+".join(map(lambda x: x.name, k.parts)))
#
# m0 = PsiStatModel('psi0', X=X, X_variance=X_var, Z=Z,
# M=M, kernel=GPy.kern.linear(Q))
# m1 = PsiStatModel('psi1', X=X, X_variance=X_var, Z=Z,
# M=M, kernel=kernel)
m1 = PsiStatModel('psi1', X=X, X_variance=X_var, Z=Z,
M=M, kernel=kernel)
m2 = PsiStatModel('psi2', X=X, X_variance=X_var, Z=Z, m2 = PsiStatModel('psi2', X=X, X_variance=X_var, Z=Z,
M=M, kernel=GPy.kern.rbf(Q)) M=M, kernel=GPy.kern.rbf(Q))
m3 = PsiStatModel('psi2', X=X, X_variance=X_var, Z=Z, m3 = PsiStatModel('psi2', X=X, X_variance=X_var, Z=Z,
M=M, kernel=GPy.kern.linear(Q) + GPy.kern.bias(Q)) M=M, kernel=GPy.kern.linear(Q) + GPy.kern.bias(Q))
m4 = PsiStatModel('psi2', X=X, X_variance=X_var, Z=Z, m4 = PsiStatModel('psi2', X=X, X_variance=X_var, Z=Z,
M=M, kernel=GPy.kern.rbf(Q) + GPy.kern.bias(Q)) M=M, kernel=GPy.kern.rbf(Q) + GPy.kern.bias(Q))
else:
unittest.main()