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added m['ard'] gives all parameters matching 'ard', as well as setting m['ard'] = x to set all mrd parameters
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2 changed files with 94 additions and 111 deletions
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@ -83,6 +83,12 @@ class model(parameterised):
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for w in which:
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for w in which:
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self.priors[w] = what
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self.priors[w] = what
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def __getitem__(self, name):
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return self.get(name)
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def __setitem(self, name, val):
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return self.set(name, val)
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def get(self, name, return_names=False):
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def get(self, name, return_names=False):
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"""
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"""
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Get a model parameter by name. The name is applied as a regular expression and all parameters that match that regular expression are returned.
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Get a model parameter by name. The name is applied as a regular expression and all parameters that match that regular expression are returned.
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@ -287,29 +287,6 @@ class MRD(model):
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else:
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else:
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return pylab.gcf()
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return pylab.gcf()
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def plot_X_1d(self, fig_num="MRD X 1d", axes=None, colors=None):
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fig = pylab.figure(num=fig_num, figsize=(min(8, (3 * len(self.bgplvms))), min(12, (2 * self.X.shape[1]))))
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if colors is None:
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colors = pylab.gca()._get_lines.color_cycle
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pylab.clf()
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plots = []
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for i in range(self.X.shape[1]):
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if axes is None:
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ax = fig.add_subplot(self.X.shape[1], 1, i + 1)
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ax.plot(self.X, c='k', alpha=.3)
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plots.extend(ax.plot(self.X.T[i], c=colors.next(), label=r"$\mathbf{{X_{}}}$".format(i)))
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ax.fill_between(numpy.arange(self.X.shape[0]),
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self.X.T[i] - 2 * numpy.sqrt(self.gref.X_variance.T[i]),
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self.X.T[i] + 2 * numpy.sqrt(self.gref.X_variance.T[i]),
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facecolor=plots[-1].get_color(),
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alpha=.3)
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ax.legend(borderaxespad=0.)
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if i < self.X.shape[1] - 1:
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ax.set_xticklabels('')
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pylab.draw()
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fig.tight_layout(h_pad=.01) # , rect=(0, 0, 1, .95))
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return fig
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def plot_X(self, fig_num="MRD Predictions", axes=None):
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def plot_X(self, fig_num="MRD Predictions", axes=None):
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fig = self._handle_plotting(fig_num, axes, lambda i, g, ax: ax.imshow(g.X))
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fig = self._handle_plotting(fig_num, axes, lambda i, g, ax: ax.imshow(g.X))
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return fig
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return fig
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