From 296c093611f46c8632a7235f7d414581f5969294 Mon Sep 17 00:00:00 2001 From: Alan Saul Date: Mon, 15 Apr 2013 12:08:22 +0100 Subject: [PATCH 1/2] Tidy up comments --- python/likelihoods/likelihood_function.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/python/likelihoods/likelihood_function.py b/python/likelihoods/likelihood_function.py index 0d421882..f14faf33 100644 --- a/python/likelihoods/likelihood_function.py +++ b/python/likelihoods/likelihood_function.py @@ -9,7 +9,7 @@ class student_t(likelihood_function): """Student t likelihood distribution For nomanclature see Bayesian Data Analysis 2003 p576 - $$\ln p(y_{i}|f_{i}) = \ln \Gamma(\frac{v+1}{2}) - \ln \Gamma(\frac{v}{2})\sqrt{v \pi}\sigma - \frac{v+1}{2}\ln (1 + \frac{1}{v}\left(\frac{y_{i} - f_{i}}{\sigma}\right)^2$$ + $$\ln p(y_{i}|f_{i}) = \ln \Gamma(\frac{v+1}{2}) - \ln \Gamma(\frac{v}{2})\sqrt{v \pi}\sigma - \frac{v+1}{2}\ln (1 + \frac{1}{v}\left(\frac{y_{i} - f_{i}}{\sigma}\right)^2)$$ Laplace: Needs functions to calculate From 1e707f125c7e9313b4444b23811425ddc555dba3 Mon Sep 17 00:00:00 2001 From: Alan Saul Date: Mon, 15 Apr 2013 12:10:42 +0100 Subject: [PATCH 2/2] Make directory structure match that of GPy --- {python => GPy}/__init__.py | 0 {python => GPy}/examples/__init__.py | 0 {python => GPy}/examples/laplace_approximations.py | 0 {python => GPy}/likelihoods/Laplace.py | 0 {python => GPy}/likelihoods/__init__.py | 0 {python => GPy}/likelihoods/likelihood_function.py | 0 {python => GPy}/models/__init__.py | 0 {python => GPy}/models/coxGP.py | 0 {python => GPy}/testing/__init__.py | 0 {python => GPy}/testing/cox_tests.py | 0 10 files changed, 0 insertions(+), 0 deletions(-) rename {python => GPy}/__init__.py (100%) rename {python => GPy}/examples/__init__.py (100%) rename {python => GPy}/examples/laplace_approximations.py (100%) rename {python => GPy}/likelihoods/Laplace.py (100%) rename {python => GPy}/likelihoods/__init__.py (100%) rename {python => GPy}/likelihoods/likelihood_function.py (100%) rename {python => GPy}/models/__init__.py (100%) rename {python => GPy}/models/coxGP.py (100%) rename {python => GPy}/testing/__init__.py (100%) rename {python => GPy}/testing/cox_tests.py (100%) diff --git a/python/__init__.py b/GPy/__init__.py similarity index 100% rename from python/__init__.py rename to GPy/__init__.py diff --git a/python/examples/__init__.py b/GPy/examples/__init__.py similarity index 100% rename from python/examples/__init__.py rename to GPy/examples/__init__.py diff --git a/python/examples/laplace_approximations.py b/GPy/examples/laplace_approximations.py similarity index 100% rename from python/examples/laplace_approximations.py rename to GPy/examples/laplace_approximations.py diff --git a/python/likelihoods/Laplace.py b/GPy/likelihoods/Laplace.py similarity index 100% rename from python/likelihoods/Laplace.py rename to GPy/likelihoods/Laplace.py diff --git a/python/likelihoods/__init__.py b/GPy/likelihoods/__init__.py similarity index 100% rename from python/likelihoods/__init__.py rename to GPy/likelihoods/__init__.py diff --git a/python/likelihoods/likelihood_function.py b/GPy/likelihoods/likelihood_function.py similarity index 100% rename from python/likelihoods/likelihood_function.py rename to GPy/likelihoods/likelihood_function.py diff --git a/python/models/__init__.py b/GPy/models/__init__.py similarity index 100% rename from python/models/__init__.py rename to GPy/models/__init__.py diff --git a/python/models/coxGP.py b/GPy/models/coxGP.py similarity index 100% rename from python/models/coxGP.py rename to GPy/models/coxGP.py diff --git a/python/testing/__init__.py b/GPy/testing/__init__.py similarity index 100% rename from python/testing/__init__.py rename to GPy/testing/__init__.py diff --git a/python/testing/cox_tests.py b/GPy/testing/cox_tests.py similarity index 100% rename from python/testing/cox_tests.py rename to GPy/testing/cox_tests.py