diff --git a/GPy/kern/__init__.py b/GPy/kern/__init__.py index f062ee56..93274ec5 100644 --- a/GPy/kern/__init__.py +++ b/GPy/kern/__init__.py @@ -2,5 +2,9 @@ # Licensed under the BSD 3-clause license (see LICENSE.txt) -from constructors import rbf, Matern32, Matern52, exponential, linear, white, bias, finite_dimensional, spline, Brownian, rbf_sympy, sympykern, periodic_exponential, periodic_Matern32, periodic_Matern52, prod, prod_orthogonal, symmetric, coregionalise, rational_quadratic, fixed, rbfcos +from constructors import rbf, Matern32, Matern52, exponential, linear, white, bias, finite_dimensional, spline, Brownian, periodic_exponential, periodic_Matern32, periodic_Matern52, prod, prod_orthogonal, symmetric, coregionalise, rational_quadratic, fixed, rbfcos +try: + from constructors import rbf_sympy, sympykern # these depend on sympy +except: + pass from kern import kern diff --git a/GPy/kern/constructors.py b/GPy/kern/constructors.py index 6a968da4..e5743f47 100644 --- a/GPy/kern/constructors.py +++ b/GPy/kern/constructors.py @@ -165,34 +165,40 @@ def Brownian(D,variance=1.): part = Brownianpart(D,variance) return kern(D, [part]) -import sympy as sp -from sympykern import spkern -from sympy.parsing.sympy_parser import parse_expr +try: + import sympy as sp + from sympykern import spkern + from sympy.parsing.sympy_parser import parse_expr + sympy_available = True +except ImportError: + sympy_available = False -def rbf_sympy(D,ARD=False,variance=1., lengthscale=1.): - """ - Radial Basis Function covariance. - """ - X = [sp.var('x%i'%i) for i in range(D)] - Z = [sp.var('z%i'%i) for i in range(D)] - rbf_variance = sp.var('rbf_variance',positive=True) - if ARD: - rbf_lengthscales = [sp.var('rbf_lengthscale_%i'%i,positive=True) for i in range(D)] - dist_string = ' + '.join(['(x%i-z%i)**2/rbf_lengthscale_%i**2'%(i,i,i) for i in range(D)]) - dist = parse_expr(dist_string) - f = rbf_variance*sp.exp(-dist/2.) - else: - rbf_lengthscale = sp.var('rbf_lengthscale',positive=True) - dist_string = ' + '.join(['(x%i-z%i)**2'%(i,i) for i in range(D)]) - dist = parse_expr(dist_string) - f = rbf_variance*sp.exp(-dist/(2*rbf_lengthscale**2)) - return kern(D,[spkern(D,f)]) +if sympy_available: + def rbf_sympy(D,ARD=False,variance=1., lengthscale=1.): + """ + Radial Basis Function covariance. + """ + X = [sp.var('x%i'%i) for i in range(D)] + Z = [sp.var('z%i'%i) for i in range(D)] + rbf_variance = sp.var('rbf_variance',positive=True) + if ARD: + rbf_lengthscales = [sp.var('rbf_lengthscale_%i'%i,positive=True) for i in range(D)] + dist_string = ' + '.join(['(x%i-z%i)**2/rbf_lengthscale_%i**2'%(i,i,i) for i in range(D)]) + dist = parse_expr(dist_string) + f = rbf_variance*sp.exp(-dist/2.) + else: + rbf_lengthscale = sp.var('rbf_lengthscale',positive=True) + dist_string = ' + '.join(['(x%i-z%i)**2'%(i,i) for i in range(D)]) + dist = parse_expr(dist_string) + f = rbf_variance*sp.exp(-dist/(2*rbf_lengthscale**2)) + return kern(D,[spkern(D,f)]) -def sympykern(D,k): - """ - A kernel from a symbolic sympy representation - """ - return kern(D,[spkern(D,k)]) + def sympykern(D,k): + """ + A kernel from a symbolic sympy representation + """ + return kern(D,[spkern(D,k)]) +del sympy_available def periodic_exponential(D=1,variance=1., lengthscale=None, period=2*np.pi,n_freq=10,lower=0.,upper=4*np.pi): """