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Added debuggin, and interestingly likelihood rst.. shouldnt make a difference:

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Alan Saul 2013-02-08 14:54:39 +00:00
parent e657f532c7
commit 6580aecfe0
6 changed files with 84 additions and 27 deletions
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16
doc/GPy.examples.rst
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@ -33,6 +33,14 @@ examples Package
:undoc-members: :undoc-members:
:show-inheritance: :show-inheritance:
:mod:`poisson` Module
---------------------
.. automodule:: GPy.examples.poisson
:members:
:undoc-members:
:show-inheritance:
:mod:`regression` Module :mod:`regression` Module
------------------------ ------------------------
@ -57,6 +65,14 @@ examples Package
:undoc-members: :undoc-members:
:show-inheritance: :show-inheritance:
:mod:`sparse_ep_fix` Module
---------------------------
.. automodule:: GPy.examples.sparse_ep_fix
:members:
:undoc-members:
:show-inheritance:
:mod:`uncertain_input_GP_regression_demo` Module :mod:`uncertain_input_GP_regression_demo` Module
------------------------------------------------ ------------------------------------------------

16
doc/GPy.inference.rst
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@ -1,22 +1,6 @@
inference Package inference Package
================= =================
:mod:`Expectation_Propagation` Module
-------------------------------------
.. automodule:: GPy.inference.Expectation_Propagation
:members:
:undoc-members:
:show-inheritance:
:mod:`likelihoods` Module
-------------------------
.. automodule:: GPy.inference.likelihoods
:members:
:undoc-members:
:show-inheritance:
:mod:`optimization` Module :mod:`optimization` Module
-------------------------- --------------------------

43
doc/GPy.likelihoods.rst Normal file
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@ -0,0 +1,43 @@
likelihoods Package
===================
:mod:`likelihoods` Package
--------------------------
.. automodule:: GPy.likelihoods
:members:
:undoc-members:
:show-inheritance:
:mod:`EP` Module
----------------
.. automodule:: GPy.likelihoods.EP
:members:
:undoc-members:
:show-inheritance:
:mod:`Gaussian` Module
----------------------
.. automodule:: GPy.likelihoods.Gaussian
:members:
:undoc-members:
:show-inheritance:
:mod:`likelihood` Module
------------------------
.. automodule:: GPy.likelihoods.likelihood
:members:
:undoc-members:
:show-inheritance:
:mod:`likelihood_functions` Module
----------------------------------
.. automodule:: GPy.likelihoods.likelihood_functions
:members:
:undoc-members:
:show-inheritance:

16
doc/GPy.models.rst
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@ -17,18 +17,18 @@ models Package
:undoc-members: :undoc-members:
:show-inheritance: :show-inheritance:
:mod:`GPLVM` Module :mod:`GP` Module
------------------- ----------------
.. automodule:: GPy.models.GPLVM .. automodule:: GPy.models.GP
:members: :members:
:undoc-members: :undoc-members:
:show-inheritance: :show-inheritance:
:mod:`GP_EP` Module :mod:`GPLVM` Module
------------------- -------------------
.. automodule:: GPy.models.GP_EP .. automodule:: GPy.models.GPLVM
:members: :members:
:undoc-members: :undoc-members:
:show-inheritance: :show-inheritance:
@ -41,10 +41,10 @@ models Package
:undoc-members: :undoc-members:
:show-inheritance: :show-inheritance:
:mod:`generalized_FITC` Module :mod:`sparse_GP` Module
------------------------------ -----------------------
.. automodule:: GPy.models.generalized_FITC .. automodule:: GPy.models.sparse_GP
:members: :members:
:undoc-members: :undoc-members:
:show-inheritance: :show-inheritance:

1
doc/GPy.rst
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@ -18,6 +18,7 @@ Subpackages
GPy.examples GPy.examples
GPy.inference GPy.inference
GPy.kern GPy.kern
GPy.likelihoods
GPy.models GPy.models
GPy.util GPy.util

19
doc/conf.py
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@ -119,13 +119,26 @@ for mod_name in MOCK_MODULES:
# ----------------------- READTHEDOCS ------------------ # ----------------------- READTHEDOCS ------------------
on_rtd = os.environ.get('READTHEDOCS', None) == 'True' on_rtd = os.environ.get('READTHEDOCS', None) == 'True'
on_rtd = True
if on_rtd: if on_rtd:
#sys.path.insert(0, os.getcwd() + "/../GPy") #sys.path.insert(0, os.getcwd() + "/../GPy")
#sys.path.append(os.getcwd() + "/../GPy") #sys.path.append(os.getcwd() + "/../GPy")
print "I am here" print "I am here"
print(os.system("pwd")) #print(os.system("pwd"))
print(os.system("ls ../")) #print(os.system("ls ../"))
os.system("sphinx-apidoc -f -o . ../GPy") #os.system("sphinx-apidoc -f -o . ../GPy")
import subprocess
proc = subprocess.Popen("pwd", stdout=subprocess.PIPE, shell=True)
(out, err) = proc.communicate()
print "program output:", out
proc = subprocess.Popen("ls ../", stdout=subprocess.PIPE, shell=True)
(out, err) = proc.communicate()
print "program output:", out
proc = subprocess.Popen("sphinx-apidoc -f -o . ../GPy", stdout=subprocess.PIPE, shell=True)
(out, err) = proc.communicate()
print "program output:", out
#os.system("cd ..") #os.system("cd ..")
#os.system("cd ./docs") #os.system("cd ./docs")