diff --git a/GPy/models.py b/GPy/models.py index a56fb305..8a1d046c 100644 --- a/GPy/models.py +++ b/GPy/models.py @@ -4,20 +4,20 @@ Created on 14 Nov 2013 @author: maxz ''' -from _models.bayesian_gplvm import BayesianGPLVM -from _models.gp_regression import GPRegression -from _models.gp_classification import GPClassification#; _gp_classification = gp_classification ; del gp_classification -from _models.sparse_gp_regression import SparseGPRegression#; _sparse_gp_regression = sparse_gp_regression ; del sparse_gp_regression -from _models.svigp_regression import SVIGPRegression#; _svigp_regression = svigp_regression ; del svigp_regression -from _models.sparse_gp_classification import SparseGPClassification#; _sparse_gp_classification = sparse_gp_classification ; del sparse_gp_classification -from _models.fitc_classification import FITCClassification#; _fitc_classification = fitc_classification ; del fitc_classification -from _models.gplvm import GPLVM#; _gplvm = gplvm ; del gplvm -from _models.bcgplvm import BCGPLVM#; _bcgplvm = bcgplvm; del bcgplvm -from _models.sparse_gplvm import SparseGPLVM#; _sparse_gplvm = sparse_gplvm ; del sparse_gplvm -from _models.warped_gp import WarpedGP#; _warped_gp = warped_gp ; del warped_gp -from _models.bayesian_gplvm import BayesianGPLVM#; _bayesian_gplvm = bayesian_gplvm ; del bayesian_gplvm -from _models.mrd import MRD#; _mrd = mrd; del mrd -from _models.gradient_checker import GradientChecker#; _gradient_checker = gradient_checker ; del gradient_checker -from _models.gp_multioutput_regression import GPMultioutputRegression#; _gp_multioutput_regression = gp_multioutput_regression ; del gp_multioutput_regression -from _models.sparse_gp_multioutput_regression import SparseGPMultioutputRegression#; _sparse_gp_multioutput_regression = sparse_gp_multioutput_regression ; del sparse_gp_multioutput_regression -from _models.gradient_checker import GradientChecker \ No newline at end of file +from models_modules.bayesian_gplvm import BayesianGPLVM +from models_modules.gp_regression import GPRegression +from models_modules.gp_classification import GPClassification#; _gp_classification = gp_classification ; del gp_classification +from models_modules.sparse_gp_regression import SparseGPRegression#; _sparse_gp_regression = sparse_gp_regression ; del sparse_gp_regression +from models_modules.svigp_regression import SVIGPRegression#; _svigp_regression = svigp_regression ; del svigp_regression +from models_modules.sparse_gp_classification import SparseGPClassification#; _sparse_gp_classification = sparse_gp_classification ; del sparse_gp_classification +from models_modules.fitc_classification import FITCClassification#; _fitc_classification = fitc_classification ; del fitc_classification +from models_modules.gplvm import GPLVM#; _gplvm = gplvm ; del gplvm +from models_modules.bcgplvm import BCGPLVM#; _bcgplvm = bcgplvm; del bcgplvm +from models_modules.sparse_gplvm import SparseGPLVM#; _sparse_gplvm = sparse_gplvm ; del sparse_gplvm +from models_modules.warped_gp import WarpedGP#; _warped_gp = warped_gp ; del warped_gp +from models_modules.bayesian_gplvm import BayesianGPLVM#; _bayesian_gplvm = bayesian_gplvm ; del bayesian_gplvm +from models_modules.mrd import MRD#; _mrd = mrd; del mrd +from models_modules.gradient_checker import GradientChecker#; _gradient_checker = gradient_checker ; del gradient_checker +from models_modules.gp_multioutput_regression import GPMultioutputRegression#; _gp_multioutput_regression = gp_multioutput_regression ; del gp_multioutput_regression +from models_modules.sparse_gp_multioutput_regression import SparseGPMultioutputRegression#; _sparse_gp_multioutput_regression = sparse_gp_multioutput_regression ; del sparse_gp_multioutput_regression +from models_modules.gradient_checker import GradientChecker \ No newline at end of file diff --git a/GPy/_models/__init__.py b/GPy/models_modules/__init__.py similarity index 100% rename from GPy/_models/__init__.py rename to GPy/models_modules/__init__.py diff --git a/GPy/_models/bayesian_gplvm.py b/GPy/models_modules/bayesian_gplvm.py similarity index 85% rename from GPy/_models/bayesian_gplvm.py rename to GPy/models_modules/bayesian_gplvm.py index 2b299ad8..90e54111 100644 --- a/GPy/_models/bayesian_gplvm.py +++ b/GPy/models_modules/bayesian_gplvm.py @@ -12,6 +12,7 @@ from GPy.util import plot_latent, linalg from .gplvm import GPLVM from GPy.util.plot_latent import most_significant_input_dimensions from matplotlib import pyplot +from GPy.core.model import Model class BayesianGPLVM(SparseGP, GPLVM): """ @@ -285,6 +286,57 @@ class BayesianGPLVM(SparseGP, GPLVM): self.init = state.pop() SparseGP.setstate(self, state) +class BayesianGPLVMWithMissingData(Model): + """ + Bayesian Gaussian Process Latent Variable Model with missing data support. + NOTE: Missing data is assumed to be missing at random! + + This extension comes with a large memory and computing time deficiency. + Use only if fraction of missing data at random is higher than 60%. + Otherwise, try filtering data before using this extension. + + Y can hold missing data as given by `missing`, standard is :class:`~numpy.nan`. + + If likelihood is given for Y, this likelihood will be discarded, but the parameters + of the likelihood will be taken. Also every effort of creating the same likelihood + will be done. + + :param likelihood_or_Y: observed data (np.ndarray) or GPy.likelihood + :type likelihood_or_Y: :class:`~numpy.ndarray` | :class:`~GPy.likelihoods.likelihood.likelihood` instance + :param int input_dim: latent dimensionality + :param init: initialisation method for the latent space + :type init: 'PCA' | 'random' + """ + def __init__(self, likelihood_or_Y, input_dim, X=None, X_variance=None, init='PCA', num_inducing=10, + Z=None, kernel=None, missing=np.nan, **kwargs): + if type(likelihood_or_Y) is np.ndarray: + likelihood = Gaussian(likelihood_or_Y) + else: + likelihood = likelihood_or_Y + + if X == None: + X = self.initialise_latent(init, input_dim, likelihood.Y) + self.init = init + + if X_variance is None: + X_variance = np.clip((np.ones_like(X) * 0.5) + .01 * np.random.randn(*X.shape), 0.001, 1) + + if Z is None: + Z = np.random.permutation(X.copy())[:num_inducing] + assert Z.shape[1] == X.shape[1] + + if kernel is None: + kernel = kern.rbf(input_dim) # + kern.white(input_dim) + + SparseGP.__init__(self, X, likelihood, kernel, Z=Z, X_variance=X_variance, **kwargs) + self.ensure_default_constraints() + + def _get_param_names(self): + X_names = sum([['X_%i_%i' % (n, q) for q in range(self.input_dim)] for n in range(self.num_data)], []) + S_names = sum([['X_variance_%i_%i' % (n, q) for q in range(self.input_dim)] for n in range(self.num_data)], []) + return (X_names + S_names + SparseGP._get_param_names(self)) + + pass def latent_cost_and_grad(mu_S, kern, Z, dL_dpsi0, dL_dpsi1, dL_dpsi2): """ diff --git a/GPy/_models/bcgplvm.py b/GPy/models_modules/bcgplvm.py similarity index 100% rename from GPy/_models/bcgplvm.py rename to GPy/models_modules/bcgplvm.py diff --git a/GPy/_models/fitc_classification.py b/GPy/models_modules/fitc_classification.py similarity index 100% rename from GPy/_models/fitc_classification.py rename to GPy/models_modules/fitc_classification.py diff --git a/GPy/_models/gp_classification.py b/GPy/models_modules/gp_classification.py similarity index 100% rename from GPy/_models/gp_classification.py rename to GPy/models_modules/gp_classification.py diff --git a/GPy/_models/gp_multioutput_regression.py b/GPy/models_modules/gp_multioutput_regression.py similarity index 100% rename from GPy/_models/gp_multioutput_regression.py rename to GPy/models_modules/gp_multioutput_regression.py diff --git a/GPy/_models/gp_regression.py b/GPy/models_modules/gp_regression.py similarity index 100% rename from GPy/_models/gp_regression.py rename to GPy/models_modules/gp_regression.py diff --git a/GPy/_models/gplvm.py b/GPy/models_modules/gplvm.py similarity index 100% rename from GPy/_models/gplvm.py rename to GPy/models_modules/gplvm.py diff --git a/GPy/_models/gradient_checker.py b/GPy/models_modules/gradient_checker.py similarity index 100% rename from GPy/_models/gradient_checker.py rename to GPy/models_modules/gradient_checker.py diff --git a/GPy/_models/mrd.py b/GPy/models_modules/mrd.py similarity index 100% rename from GPy/_models/mrd.py rename to GPy/models_modules/mrd.py diff --git a/GPy/_models/sparse_gp_classification.py b/GPy/models_modules/sparse_gp_classification.py similarity index 100% rename from GPy/_models/sparse_gp_classification.py rename to GPy/models_modules/sparse_gp_classification.py diff --git a/GPy/_models/sparse_gp_multioutput_regression.py b/GPy/models_modules/sparse_gp_multioutput_regression.py similarity index 100% rename from GPy/_models/sparse_gp_multioutput_regression.py rename to GPy/models_modules/sparse_gp_multioutput_regression.py diff --git a/GPy/_models/sparse_gp_regression.py b/GPy/models_modules/sparse_gp_regression.py similarity index 100% rename from GPy/_models/sparse_gp_regression.py rename to GPy/models_modules/sparse_gp_regression.py diff --git a/GPy/_models/sparse_gplvm.py b/GPy/models_modules/sparse_gplvm.py similarity index 100% rename from GPy/_models/sparse_gplvm.py rename to GPy/models_modules/sparse_gplvm.py diff --git a/GPy/_models/svigp_regression.py b/GPy/models_modules/svigp_regression.py similarity index 100% rename from GPy/_models/svigp_regression.py rename to GPy/models_modules/svigp_regression.py diff --git a/GPy/_models/warped_gp.py b/GPy/models_modules/warped_gp.py similarity index 100% rename from GPy/_models/warped_gp.py rename to GPy/models_modules/warped_gp.py diff --git a/doc/GPy.core.rst b/doc/GPy.core.rst index c4f1849d..d7f18192 100644 --- a/doc/GPy.core.rst +++ b/doc/GPy.core.rst @@ -1,102 +1,107 @@ -GPy.core package -================ +core Package +============ -Submodules ----------- +:mod:`core` Package +------------------- -GPy.core.domains module ------------------------ +.. automodule:: GPy.core + :members: + :undoc-members: + :show-inheritance: + +:mod:`domains` Module +--------------------- .. automodule:: GPy.core.domains :members: :undoc-members: :show-inheritance: -GPy.core.fitc module --------------------- +:mod:`fitc` Module +------------------ .. automodule:: GPy.core.fitc :members: :undoc-members: :show-inheritance: -GPy.core.gp module ------------------- +:mod:`gp` Module +---------------- .. automodule:: GPy.core.gp :members: :undoc-members: :show-inheritance: -GPy.core.gp_base module ------------------------ +:mod:`gp_base` Module +--------------------- .. automodule:: GPy.core.gp_base :members: :undoc-members: :show-inheritance: -GPy.core.mapping module ------------------------ +:mod:`mapping` Module +--------------------- .. automodule:: GPy.core.mapping :members: :undoc-members: :show-inheritance: -GPy.core.model module ---------------------- +:mod:`model` Module +------------------- .. automodule:: GPy.core.model :members: :undoc-members: :show-inheritance: -GPy.core.parameterized module ------------------------------ +:mod:`parameterized` Module +--------------------------- .. automodule:: GPy.core.parameterized :members: :undoc-members: :show-inheritance: -GPy.core.priors module ----------------------- +:mod:`priors` Module +-------------------- .. automodule:: GPy.core.priors :members: :undoc-members: :show-inheritance: -GPy.core.sparse_gp module -------------------------- +:mod:`sparse_gp` Module +----------------------- .. automodule:: GPy.core.sparse_gp :members: :undoc-members: :show-inheritance: -GPy.core.svigp module ---------------------- +:mod:`svigp` Module +------------------- .. automodule:: GPy.core.svigp :members: :undoc-members: :show-inheritance: -GPy.core.transformations module -------------------------------- +:mod:`transformations` Module +----------------------------- .. automodule:: GPy.core.transformations :members: :undoc-members: :show-inheritance: +:mod:`variational` Module +------------------------- -Module contents ---------------- - -.. automodule:: GPy.core +.. automodule:: GPy.core.variational :members: :undoc-members: :show-inheritance: + diff --git a/doc/GPy.examples.rst b/doc/GPy.examples.rst index 288ff631..176ae396 100644 --- a/doc/GPy.examples.rst +++ b/doc/GPy.examples.rst @@ -1,62 +1,59 @@ -GPy.examples package -==================== +examples Package +================ -Submodules ----------- +:mod:`examples` Package +----------------------- -GPy.examples.classification module ----------------------------------- +.. automodule:: GPy.examples + :members: + :undoc-members: + :show-inheritance: + +:mod:`classification` Module +---------------------------- .. automodule:: GPy.examples.classification :members: :undoc-members: :show-inheritance: -GPy.examples.dimensionality_reduction module --------------------------------------------- +:mod:`dimensionality_reduction` Module +-------------------------------------- .. automodule:: GPy.examples.dimensionality_reduction :members: :undoc-members: :show-inheritance: -GPy.examples.laplace_approximations module ------------------------------------------- +:mod:`laplace_approximations` Module +------------------------------------ .. automodule:: GPy.examples.laplace_approximations :members: :undoc-members: :show-inheritance: -GPy.examples.regression module ------------------------------- +:mod:`regression` Module +------------------------ .. automodule:: GPy.examples.regression :members: :undoc-members: :show-inheritance: -GPy.examples.stochastic module ------------------------------- +:mod:`stochastic` Module +------------------------ .. automodule:: GPy.examples.stochastic :members: :undoc-members: :show-inheritance: -GPy.examples.tutorials module ------------------------------ +:mod:`tutorials` Module +----------------------- .. automodule:: GPy.examples.tutorials :members: :undoc-members: :show-inheritance: - -Module contents ---------------- - -.. automodule:: GPy.examples - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/GPy.inference.rst b/doc/GPy.inference.rst index 28f42994..6a1bef4a 100644 --- a/doc/GPy.inference.rst +++ b/doc/GPy.inference.rst @@ -1,62 +1,51 @@ -GPy.inference package -===================== +inference Package +================= -Submodules ----------- - -GPy.inference.conjugate_gradient_descent module ------------------------------------------------ +:mod:`conjugate_gradient_descent` Module +---------------------------------------- .. automodule:: GPy.inference.conjugate_gradient_descent :members: :undoc-members: :show-inheritance: -GPy.inference.gradient_descent_update_rules module --------------------------------------------------- +:mod:`gradient_descent_update_rules` Module +------------------------------------------- .. automodule:: GPy.inference.gradient_descent_update_rules :members: :undoc-members: :show-inheritance: -GPy.inference.optimization module ---------------------------------- +:mod:`optimization` Module +-------------------------- .. automodule:: GPy.inference.optimization :members: :undoc-members: :show-inheritance: -GPy.inference.samplers module ------------------------------ +:mod:`samplers` Module +---------------------- .. automodule:: GPy.inference.samplers :members: :undoc-members: :show-inheritance: -GPy.inference.scg module ------------------------- +:mod:`scg` Module +----------------- .. automodule:: GPy.inference.scg :members: :undoc-members: :show-inheritance: -GPy.inference.sgd module ------------------------- +:mod:`sgd` Module +----------------- .. automodule:: GPy.inference.sgd :members: :undoc-members: :show-inheritance: - -Module contents ---------------- - -.. automodule:: GPy.inference - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/GPy.kern.parts.rst b/doc/GPy.kern.parts.rst index 650fe5cb..45d3e235 100644 --- a/doc/GPy.kern.parts.rst +++ b/doc/GPy.kern.parts.rst @@ -1,262 +1,275 @@ -GPy.kern.parts package -====================== +parts Package +============= -Submodules ----------- +:mod:`parts` Package +-------------------- -GPy.kern.parts.Brownian module ------------------------------- +.. automodule:: GPy.kern.parts + :members: + :undoc-members: + :show-inheritance: + +:mod:`Brownian` Module +---------------------- .. automodule:: GPy.kern.parts.Brownian :members: :undoc-members: :show-inheritance: -GPy.kern.parts.Matern32 module ------------------------------- +:mod:`Matern32` Module +---------------------- .. automodule:: GPy.kern.parts.Matern32 :members: :undoc-members: :show-inheritance: -GPy.kern.parts.Matern52 module ------------------------------- +:mod:`Matern52` Module +---------------------- .. automodule:: GPy.kern.parts.Matern52 :members: :undoc-members: :show-inheritance: -GPy.kern.parts.ODE_1 module ---------------------------- +:mod:`ODE_1` Module +------------------- .. automodule:: GPy.kern.parts.ODE_1 :members: :undoc-members: :show-inheritance: -GPy.kern.parts.bias module --------------------------- +:mod:`ODE_UY` Module +-------------------- + +.. automodule:: GPy.kern.parts.ODE_UY + :members: + :undoc-members: + :show-inheritance: + +:mod:`bias` Module +------------------ .. automodule:: GPy.kern.parts.bias :members: :undoc-members: :show-inheritance: -GPy.kern.parts.coregionalize module ------------------------------------ +:mod:`coregionalize` Module +--------------------------- .. automodule:: GPy.kern.parts.coregionalize :members: :undoc-members: :show-inheritance: -GPy.kern.parts.eq_ode1 module ------------------------------ +:mod:`eq_ode1` Module +--------------------- .. automodule:: GPy.kern.parts.eq_ode1 :members: :undoc-members: :show-inheritance: -GPy.kern.parts.exponential module ---------------------------------- +:mod:`exponential` Module +------------------------- .. automodule:: GPy.kern.parts.exponential :members: :undoc-members: :show-inheritance: -GPy.kern.parts.finite_dimensional module ----------------------------------------- +:mod:`finite_dimensional` Module +-------------------------------- .. automodule:: GPy.kern.parts.finite_dimensional :members: :undoc-members: :show-inheritance: -GPy.kern.parts.fixed module ---------------------------- +:mod:`fixed` Module +------------------- .. automodule:: GPy.kern.parts.fixed :members: :undoc-members: :show-inheritance: -GPy.kern.parts.gibbs module ---------------------------- +:mod:`gibbs` Module +------------------- .. automodule:: GPy.kern.parts.gibbs :members: :undoc-members: :show-inheritance: -GPy.kern.parts.hetero module ----------------------------- +:mod:`hetero` Module +-------------------- .. automodule:: GPy.kern.parts.hetero :members: :undoc-members: :show-inheritance: -GPy.kern.parts.hierarchical module ----------------------------------- +:mod:`hierarchical` Module +-------------------------- .. automodule:: GPy.kern.parts.hierarchical :members: :undoc-members: :show-inheritance: -GPy.kern.parts.independent_outputs module ------------------------------------------ +:mod:`independent_outputs` Module +--------------------------------- .. automodule:: GPy.kern.parts.independent_outputs :members: :undoc-members: :show-inheritance: -GPy.kern.parts.kernpart module ------------------------------- +:mod:`kernpart` Module +---------------------- .. automodule:: GPy.kern.parts.kernpart :members: :undoc-members: :show-inheritance: -GPy.kern.parts.linear module ----------------------------- +:mod:`linear` Module +-------------------- .. automodule:: GPy.kern.parts.linear :members: :undoc-members: :show-inheritance: -GPy.kern.parts.mlp module -------------------------- +:mod:`mlp` Module +----------------- .. automodule:: GPy.kern.parts.mlp :members: :undoc-members: :show-inheritance: -GPy.kern.parts.periodic_Matern32 module ---------------------------------------- +:mod:`periodic_Matern32` Module +------------------------------- .. automodule:: GPy.kern.parts.periodic_Matern32 :members: :undoc-members: :show-inheritance: -GPy.kern.parts.periodic_Matern52 module ---------------------------------------- +:mod:`periodic_Matern52` Module +------------------------------- .. automodule:: GPy.kern.parts.periodic_Matern52 :members: :undoc-members: :show-inheritance: -GPy.kern.parts.periodic_exponential module ------------------------------------------- +:mod:`periodic_exponential` Module +---------------------------------- .. automodule:: GPy.kern.parts.periodic_exponential :members: :undoc-members: :show-inheritance: -GPy.kern.parts.poly module --------------------------- +:mod:`poly` Module +------------------ .. automodule:: GPy.kern.parts.poly :members: :undoc-members: :show-inheritance: -GPy.kern.parts.prod module --------------------------- +:mod:`prod` Module +------------------ .. automodule:: GPy.kern.parts.prod :members: :undoc-members: :show-inheritance: -GPy.kern.parts.prod_orthogonal module -------------------------------------- +:mod:`prod_orthogonal` Module +----------------------------- .. automodule:: GPy.kern.parts.prod_orthogonal :members: :undoc-members: :show-inheritance: -GPy.kern.parts.rational_quadratic module ----------------------------------------- +:mod:`rational_quadratic` Module +-------------------------------- .. automodule:: GPy.kern.parts.rational_quadratic :members: :undoc-members: :show-inheritance: -GPy.kern.parts.rbf module -------------------------- +:mod:`rbf` Module +----------------- .. automodule:: GPy.kern.parts.rbf :members: :undoc-members: :show-inheritance: -GPy.kern.parts.rbf_inv module ------------------------------ +:mod:`rbf_inv` Module +--------------------- .. automodule:: GPy.kern.parts.rbf_inv :members: :undoc-members: :show-inheritance: -GPy.kern.parts.rbfcos module ----------------------------- +:mod:`rbfcos` Module +-------------------- .. automodule:: GPy.kern.parts.rbfcos :members: :undoc-members: :show-inheritance: -GPy.kern.parts.spline module ----------------------------- +:mod:`spline` Module +-------------------- .. automodule:: GPy.kern.parts.spline :members: :undoc-members: :show-inheritance: -GPy.kern.parts.symmetric module -------------------------------- +:mod:`symmetric` Module +----------------------- .. automodule:: GPy.kern.parts.symmetric :members: :undoc-members: :show-inheritance: -GPy.kern.parts.sympykern module -------------------------------- +:mod:`sympy_helpers` Module +--------------------------- + +.. automodule:: GPy.kern.parts.sympy_helpers + :members: + :undoc-members: + :show-inheritance: + +:mod:`sympykern` Module +----------------------- .. automodule:: GPy.kern.parts.sympykern :members: :undoc-members: :show-inheritance: -GPy.kern.parts.white module ---------------------------- +:mod:`white` Module +------------------- .. automodule:: GPy.kern.parts.white :members: :undoc-members: :show-inheritance: - -Module contents ---------------- - -.. automodule:: GPy.kern.parts - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/GPy.kern.rst b/doc/GPy.kern.rst index b4b9d9aa..35d9ec00 100644 --- a/doc/GPy.kern.rst +++ b/doc/GPy.kern.rst @@ -1,5 +1,29 @@ -GPy.kern package -================ +kern Package +============ + +:mod:`kern` Package +------------------- + +.. automodule:: GPy.kern + :members: + :undoc-members: + :show-inheritance: + +:mod:`constructors` Module +-------------------------- + +.. automodule:: GPy.kern.constructors + :members: + :undoc-members: + :show-inheritance: + +:mod:`kern` Module +------------------ + +.. automodule:: GPy.kern.kern + :members: + :undoc-members: + :show-inheritance: Subpackages ----------- @@ -8,30 +32,3 @@ Subpackages GPy.kern.parts -Submodules ----------- - -GPy.kern.constructors module ----------------------------- - -.. automodule:: GPy.kern.constructors - :members: - :undoc-members: - :show-inheritance: - -GPy.kern.kern module --------------------- - -.. automodule:: GPy.kern.kern - :members: - :undoc-members: - :show-inheritance: - - -Module contents ---------------- - -.. automodule:: GPy.kern - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/GPy.likelihoods.noise_models.rst b/doc/GPy.likelihoods.noise_models.rst index 6fec5aff..19e5e9fe 100644 --- a/doc/GPy.likelihoods.noise_models.rst +++ b/doc/GPy.likelihoods.noise_models.rst @@ -1,78 +1,75 @@ -GPy.likelihoods.noise_models package -==================================== +noise_models Package +==================== -Submodules ----------- +:mod:`noise_models` Package +--------------------------- -GPy.likelihoods.noise_models.bernoulli_noise module ---------------------------------------------------- +.. automodule:: GPy.likelihoods.noise_models + :members: + :undoc-members: + :show-inheritance: + +:mod:`bernoulli_noise` Module +----------------------------- .. automodule:: GPy.likelihoods.noise_models.bernoulli_noise :members: :undoc-members: :show-inheritance: -GPy.likelihoods.noise_models.exponential_noise module ------------------------------------------------------ +:mod:`exponential_noise` Module +------------------------------- .. automodule:: GPy.likelihoods.noise_models.exponential_noise :members: :undoc-members: :show-inheritance: -GPy.likelihoods.noise_models.gamma_noise module ------------------------------------------------ +:mod:`gamma_noise` Module +------------------------- .. automodule:: GPy.likelihoods.noise_models.gamma_noise :members: :undoc-members: :show-inheritance: -GPy.likelihoods.noise_models.gaussian_noise module --------------------------------------------------- +:mod:`gaussian_noise` Module +---------------------------- .. automodule:: GPy.likelihoods.noise_models.gaussian_noise :members: :undoc-members: :show-inheritance: -GPy.likelihoods.noise_models.gp_transformations module ------------------------------------------------------- +:mod:`gp_transformations` Module +-------------------------------- .. automodule:: GPy.likelihoods.noise_models.gp_transformations :members: :undoc-members: :show-inheritance: -GPy.likelihoods.noise_models.noise_distributions module -------------------------------------------------------- +:mod:`noise_distributions` Module +--------------------------------- .. automodule:: GPy.likelihoods.noise_models.noise_distributions :members: :undoc-members: :show-inheritance: -GPy.likelihoods.noise_models.poisson_noise module -------------------------------------------------- +:mod:`poisson_noise` Module +--------------------------- .. automodule:: GPy.likelihoods.noise_models.poisson_noise :members: :undoc-members: :show-inheritance: -GPy.likelihoods.noise_models.student_t_noise module ---------------------------------------------------- +:mod:`student_t_noise` Module +----------------------------- .. automodule:: GPy.likelihoods.noise_models.student_t_noise :members: :undoc-members: :show-inheritance: - -Module contents ---------------- - -.. automodule:: GPy.likelihoods.noise_models - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/GPy.likelihoods.rst b/doc/GPy.likelihoods.rst index 34d98739..5dcabbd1 100644 --- a/doc/GPy.likelihoods.rst +++ b/doc/GPy.likelihoods.rst @@ -1,5 +1,69 @@ -GPy.likelihoods package -======================= +likelihoods Package +=================== + +:mod:`likelihoods` Package +-------------------------- + +.. automodule:: GPy.likelihoods + :members: + :undoc-members: + :show-inheritance: + +:mod:`ep` Module +---------------- + +.. automodule:: GPy.likelihoods.ep + :members: + :undoc-members: + :show-inheritance: + +:mod:`ep_mixed_noise` Module +---------------------------- + +.. automodule:: GPy.likelihoods.ep_mixed_noise + :members: + :undoc-members: + :show-inheritance: + +:mod:`gaussian` Module +---------------------- + +.. automodule:: GPy.likelihoods.gaussian + :members: + :undoc-members: + :show-inheritance: + +:mod:`gaussian_mixed_noise` Module +---------------------------------- + +.. automodule:: GPy.likelihoods.gaussian_mixed_noise + :members: + :undoc-members: + :show-inheritance: + +:mod:`laplace` Module +--------------------- + +.. automodule:: GPy.likelihoods.laplace + :members: + :undoc-members: + :show-inheritance: + +:mod:`likelihood` Module +------------------------ + +.. automodule:: GPy.likelihoods.likelihood + :members: + :undoc-members: + :show-inheritance: + +:mod:`noise_model_constructors` Module +-------------------------------------- + +.. automodule:: GPy.likelihoods.noise_model_constructors + :members: + :undoc-members: + :show-inheritance: Subpackages ----------- @@ -8,70 +72,3 @@ Subpackages GPy.likelihoods.noise_models -Submodules ----------- - -GPy.likelihoods.ep module -------------------------- - -.. automodule:: GPy.likelihoods.ep - :members: - :undoc-members: - :show-inheritance: - -GPy.likelihoods.ep_mixed_noise module -------------------------------------- - -.. automodule:: GPy.likelihoods.ep_mixed_noise - :members: - :undoc-members: - :show-inheritance: - -GPy.likelihoods.gaussian module -------------------------------- - -.. automodule:: GPy.likelihoods.gaussian - :members: - :undoc-members: - :show-inheritance: - -GPy.likelihoods.gaussian_mixed_noise module -------------------------------------------- - -.. automodule:: GPy.likelihoods.gaussian_mixed_noise - :members: - :undoc-members: - :show-inheritance: - -GPy.likelihoods.laplace module ------------------------------- - -.. automodule:: GPy.likelihoods.laplace - :members: - :undoc-members: - :show-inheritance: - -GPy.likelihoods.likelihood module ---------------------------------- - -.. automodule:: GPy.likelihoods.likelihood - :members: - :undoc-members: - :show-inheritance: - -GPy.likelihoods.noise_model_constructors module ------------------------------------------------ - -.. automodule:: GPy.likelihoods.noise_model_constructors - :members: - :undoc-members: - :show-inheritance: - - -Module contents ---------------- - -.. automodule:: GPy.likelihoods - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/GPy.mappings.rst b/doc/GPy.mappings.rst index c48cb06e..b7444808 100644 --- a/doc/GPy.mappings.rst +++ b/doc/GPy.mappings.rst @@ -1,38 +1,35 @@ -GPy.mappings package -==================== +mappings Package +================ -Submodules ----------- +:mod:`mappings` Package +----------------------- -GPy.mappings.kernel module --------------------------- +.. automodule:: GPy.mappings + :members: + :undoc-members: + :show-inheritance: + +:mod:`kernel` Module +-------------------- .. automodule:: GPy.mappings.kernel :members: :undoc-members: :show-inheritance: -GPy.mappings.linear module --------------------------- +:mod:`linear` Module +-------------------- .. automodule:: GPy.mappings.linear :members: :undoc-members: :show-inheritance: -GPy.mappings.mlp module ------------------------ +:mod:`mlp` Module +----------------- .. automodule:: GPy.mappings.mlp :members: :undoc-members: :show-inheritance: - -Module contents ---------------- - -.. automodule:: GPy.mappings - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/GPy.models.rst b/doc/GPy.models.rst deleted file mode 100644 index 4440513e..00000000 --- a/doc/GPy.models.rst +++ /dev/null @@ -1,134 +0,0 @@ -GPy.models package -================== - -Submodules ----------- - -GPy.models.bayesian_gplvm module --------------------------------- - -.. automodule:: GPy.models.bayesian_gplvm - :members: - :undoc-members: - :show-inheritance: - -GPy.models.bcgplvm module -------------------------- - -.. automodule:: GPy.models.bcgplvm - :members: - :undoc-members: - :show-inheritance: - -GPy.models.fitc_classification module -------------------------------------- - -.. automodule:: GPy.models.fitc_classification - :members: - :undoc-members: - :show-inheritance: - -GPy.models.gp_classification module ------------------------------------ - -.. automodule:: GPy.models.gp_classification - :members: - :undoc-members: - :show-inheritance: - -GPy.models.gp_multioutput_regression module -------------------------------------------- - -.. automodule:: GPy.models.gp_multioutput_regression - :members: - :undoc-members: - :show-inheritance: - -GPy.models.gp_regression module -------------------------------- - -.. automodule:: GPy.models.gp_regression - :members: - :undoc-members: - :show-inheritance: - -GPy.models.gplvm module ------------------------ - -.. automodule:: GPy.models.gplvm - :members: - :undoc-members: - :show-inheritance: - -GPy.models.gradient_checker module ----------------------------------- - -.. automodule:: GPy.models.gradient_checker - :members: - :undoc-members: - :show-inheritance: - -GPy.models.mrd module ---------------------- - -.. automodule:: GPy.models.mrd - :members: - :undoc-members: - :show-inheritance: - -GPy.models.sparse_gp_classification module ------------------------------------------- - -.. automodule:: GPy.models.sparse_gp_classification - :members: - :undoc-members: - :show-inheritance: - -GPy.models.sparse_gp_multioutput_regression module --------------------------------------------------- - -.. automodule:: GPy.models.sparse_gp_multioutput_regression - :members: - :undoc-members: - :show-inheritance: - -GPy.models.sparse_gp_regression module --------------------------------------- - -.. automodule:: GPy.models.sparse_gp_regression - :members: - :undoc-members: - :show-inheritance: - -GPy.models.sparse_gplvm module ------------------------------- - -.. automodule:: GPy.models.sparse_gplvm - :members: - :undoc-members: - :show-inheritance: - -GPy.models.svigp_regression module ----------------------------------- - -.. automodule:: GPy.models.svigp_regression - :members: - :undoc-members: - :show-inheritance: - -GPy.models.warped_gp module ---------------------------- - -.. automodule:: GPy.models.warped_gp - :members: - :undoc-members: - :show-inheritance: - - -Module contents ---------------- - -.. automodule:: GPy.models - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/GPy.models_modules.rst b/doc/GPy.models_modules.rst new file mode 100644 index 00000000..4169ec3a --- /dev/null +++ b/doc/GPy.models_modules.rst @@ -0,0 +1,131 @@ +models_modules Package +====================== + +:mod:`models_modules` Package +----------------------------- + +.. automodule:: GPy.models_modules + :members: + :undoc-members: + :show-inheritance: + +:mod:`bayesian_gplvm` Module +---------------------------- + +.. automodule:: GPy.models_modules.bayesian_gplvm + :members: + :undoc-members: + :show-inheritance: + +:mod:`bcgplvm` Module +--------------------- + +.. automodule:: GPy.models_modules.bcgplvm + :members: + :undoc-members: + :show-inheritance: + +:mod:`fitc_classification` Module +--------------------------------- + +.. automodule:: GPy.models_modules.fitc_classification + :members: + :undoc-members: + :show-inheritance: + +:mod:`gp_classification` Module +------------------------------- + +.. automodule:: GPy.models_modules.gp_classification + :members: + :undoc-members: + :show-inheritance: + +:mod:`gp_multioutput_regression` Module +--------------------------------------- + +.. automodule:: GPy.models_modules.gp_multioutput_regression + :members: + :undoc-members: + :show-inheritance: + +:mod:`gp_regression` Module +--------------------------- + +.. automodule:: GPy.models_modules.gp_regression + :members: + :undoc-members: + :show-inheritance: + +:mod:`gplvm` Module +------------------- + +.. automodule:: GPy.models_modules.gplvm + :members: + :undoc-members: + :show-inheritance: + +:mod:`gradient_checker` Module +------------------------------ + +.. automodule:: GPy.models_modules.gradient_checker + :members: + :undoc-members: + :show-inheritance: + +:mod:`mrd` Module +----------------- + +.. automodule:: GPy.models_modules.mrd + :members: + :undoc-members: + :show-inheritance: + +:mod:`sparse_gp_classification` Module +-------------------------------------- + +.. automodule:: GPy.models_modules.sparse_gp_classification + :members: + :undoc-members: + :show-inheritance: + +:mod:`sparse_gp_multioutput_regression` Module +---------------------------------------------- + +.. automodule:: GPy.models_modules.sparse_gp_multioutput_regression + :members: + :undoc-members: + :show-inheritance: + +:mod:`sparse_gp_regression` Module +---------------------------------- + +.. automodule:: GPy.models_modules.sparse_gp_regression + :members: + :undoc-members: + :show-inheritance: + +:mod:`sparse_gplvm` Module +-------------------------- + +.. automodule:: GPy.models_modules.sparse_gplvm + :members: + :undoc-members: + :show-inheritance: + +:mod:`svigp_regression` Module +------------------------------ + +.. automodule:: GPy.models_modules.svigp_regression + :members: + :undoc-members: + :show-inheritance: + +:mod:`warped_gp` Module +----------------------- + +.. automodule:: GPy.models_modules.warped_gp + :members: + :undoc-members: + :show-inheritance: + diff --git a/doc/GPy.rst b/doc/GPy.rst index 60092e91..31ec3562 100644 --- a/doc/GPy.rst +++ b/doc/GPy.rst @@ -1,6 +1,22 @@ -GPy package +GPy Package =========== +:mod:`GPy` Package +------------------ + +.. automodule:: GPy.__init__ + :members: + :undoc-members: + :show-inheritance: + +:mod:`models` Module +-------------------- + +.. automodule:: GPy.models + :members: + :undoc-members: + :show-inheritance: + Subpackages ----------- @@ -12,14 +28,7 @@ Subpackages GPy.kern GPy.likelihoods GPy.mappings - GPy.models + GPy.models_modules GPy.testing GPy.util -Module contents ---------------- - -.. automodule:: GPy - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/GPy.testing.rst b/doc/GPy.testing.rst index 98b001c0..15b0cc79 100644 --- a/doc/GPy.testing.rst +++ b/doc/GPy.testing.rst @@ -1,134 +1,131 @@ -GPy.testing package -=================== +testing Package +=============== -Submodules ----------- +:mod:`testing` Package +---------------------- -GPy.testing.bcgplvm_tests module --------------------------------- +.. automodule:: GPy.testing + :members: + :undoc-members: + :show-inheritance: + +:mod:`bcgplvm_tests` Module +--------------------------- .. automodule:: GPy.testing.bcgplvm_tests :members: :undoc-members: :show-inheritance: -GPy.testing.bgplvm_tests module -------------------------------- +:mod:`bgplvm_tests` Module +-------------------------- .. automodule:: GPy.testing.bgplvm_tests :members: :undoc-members: :show-inheritance: -GPy.testing.cgd_tests module ----------------------------- +:mod:`cgd_tests` Module +----------------------- .. automodule:: GPy.testing.cgd_tests :members: :undoc-members: :show-inheritance: -GPy.testing.examples_tests module ---------------------------------- +:mod:`examples_tests` Module +---------------------------- .. automodule:: GPy.testing.examples_tests :members: :undoc-members: :show-inheritance: -GPy.testing.gp_transformation_tests module ------------------------------------------- +:mod:`gp_transformation_tests` Module +------------------------------------- .. automodule:: GPy.testing.gp_transformation_tests :members: :undoc-members: :show-inheritance: -GPy.testing.gplvm_tests module ------------------------------- +:mod:`gplvm_tests` Module +------------------------- .. automodule:: GPy.testing.gplvm_tests :members: :undoc-members: :show-inheritance: -GPy.testing.kernel_tests module -------------------------------- +:mod:`kernel_tests` Module +-------------------------- .. automodule:: GPy.testing.kernel_tests :members: :undoc-members: :show-inheritance: -GPy.testing.likelihoods_tests module ------------------------------------- +:mod:`likelihoods_tests` Module +------------------------------- .. automodule:: GPy.testing.likelihoods_tests :members: :undoc-members: :show-inheritance: -GPy.testing.mapping_tests module --------------------------------- +:mod:`mapping_tests` Module +--------------------------- .. automodule:: GPy.testing.mapping_tests :members: :undoc-members: :show-inheritance: -GPy.testing.mrd_tests module ----------------------------- +:mod:`mrd_tests` Module +----------------------- .. automodule:: GPy.testing.mrd_tests :members: :undoc-members: :show-inheritance: -GPy.testing.prior_tests module ------------------------------- +:mod:`prior_tests` Module +------------------------- .. automodule:: GPy.testing.prior_tests :members: :undoc-members: :show-inheritance: -GPy.testing.psi_stat_expectation_tests module ---------------------------------------------- +:mod:`psi_stat_expectation_tests` Module +---------------------------------------- .. automodule:: GPy.testing.psi_stat_expectation_tests :members: :undoc-members: :show-inheritance: -GPy.testing.psi_stat_gradient_tests module ------------------------------------------- +:mod:`psi_stat_gradient_tests` Module +------------------------------------- .. automodule:: GPy.testing.psi_stat_gradient_tests :members: :undoc-members: :show-inheritance: -GPy.testing.sparse_gplvm_tests module -------------------------------------- +:mod:`sparse_gplvm_tests` Module +-------------------------------- .. automodule:: GPy.testing.sparse_gplvm_tests :members: :undoc-members: :show-inheritance: -GPy.testing.unit_tests module ------------------------------ +:mod:`unit_tests` Module +------------------------ .. automodule:: GPy.testing.unit_tests :members: :undoc-members: :show-inheritance: - -Module contents ---------------- - -.. automodule:: GPy.testing - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/GPy.util.latent_space_visualizations.controllers.rst b/doc/GPy.util.latent_space_visualizations.controllers.rst index a88c1f5c..e78ade7b 100644 --- a/doc/GPy.util.latent_space_visualizations.controllers.rst +++ b/doc/GPy.util.latent_space_visualizations.controllers.rst @@ -1,30 +1,27 @@ -GPy.util.latent_space_visualizations.controllers package -======================================================== +controllers Package +=================== -Submodules ----------- +:mod:`controllers` Package +-------------------------- -GPy.util.latent_space_visualizations.controllers.axis_event_controller module ------------------------------------------------------------------------------ +.. automodule:: GPy.util.latent_space_visualizations.controllers + :members: + :undoc-members: + :show-inheritance: + +:mod:`axis_event_controller` Module +----------------------------------- .. automodule:: GPy.util.latent_space_visualizations.controllers.axis_event_controller :members: :undoc-members: :show-inheritance: -GPy.util.latent_space_visualizations.controllers.imshow_controller module -------------------------------------------------------------------------- +:mod:`imshow_controller` Module +------------------------------- .. automodule:: GPy.util.latent_space_visualizations.controllers.imshow_controller :members: :undoc-members: :show-inheritance: - -Module contents ---------------- - -.. automodule:: GPy.util.latent_space_visualizations.controllers - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/GPy.util.latent_space_visualizations.rst b/doc/GPy.util.latent_space_visualizations.rst index d8cbd843..4b440f61 100644 --- a/doc/GPy.util.latent_space_visualizations.rst +++ b/doc/GPy.util.latent_space_visualizations.rst @@ -1,5 +1,13 @@ -GPy.util.latent_space_visualizations package -============================================ +latent_space_visualizations Package +=================================== + +:mod:`latent_space_visualizations` Package +------------------------------------------ + +.. automodule:: GPy.util.latent_space_visualizations + :members: + :undoc-members: + :show-inheritance: Subpackages ----------- @@ -7,11 +15,5 @@ Subpackages .. toctree:: GPy.util.latent_space_visualizations.controllers + GPy.util.latent_space_visualizations.views -Module contents ---------------- - -.. automodule:: GPy.util.latent_space_visualizations - :members: - :undoc-members: - :show-inheritance: diff --git a/doc/GPy.util.rst b/doc/GPy.util.rst index f2aaed7f..2e20c006 100644 --- a/doc/GPy.util.rst +++ b/doc/GPy.util.rst @@ -1,5 +1,181 @@ -GPy.util package -================ +util Package +============ + +:mod:`util` Package +------------------- + +.. automodule:: GPy.util + :members: + :undoc-members: + :show-inheritance: + +:mod:`Tango` Module +------------------- + +.. automodule:: GPy.util.Tango + :members: + :undoc-members: + :show-inheritance: + +:mod:`block_matrices` Module +---------------------------- + +.. automodule:: GPy.util.block_matrices + :members: + :undoc-members: + :show-inheritance: + +:mod:`classification` Module +---------------------------- + +.. automodule:: GPy.util.classification + :members: + :undoc-members: + :show-inheritance: + +:mod:`config` Module +-------------------- + +.. automodule:: GPy.util.config + :members: + :undoc-members: + :show-inheritance: + +:mod:`datasets` Module +---------------------- + +.. automodule:: GPy.util.datasets + :members: + :undoc-members: + :show-inheritance: + +:mod:`decorators` Module +------------------------ + +.. automodule:: GPy.util.decorators + :members: + :undoc-members: + :show-inheritance: + +:mod:`erfcx` Module +------------------- + +.. automodule:: GPy.util.erfcx + :members: + :undoc-members: + :show-inheritance: + +:mod:`linalg` Module +-------------------- + +.. automodule:: GPy.util.linalg + :members: + :undoc-members: + :show-inheritance: + +:mod:`ln_diff_erfs` Module +-------------------------- + +.. automodule:: GPy.util.ln_diff_erfs + :members: + :undoc-members: + :show-inheritance: + +:mod:`misc` Module +------------------ + +.. automodule:: GPy.util.misc + :members: + :undoc-members: + :show-inheritance: + +:mod:`mocap` Module +------------------- + +.. automodule:: GPy.util.mocap + :members: + :undoc-members: + :show-inheritance: + +:mod:`multioutput` Module +------------------------- + +.. automodule:: GPy.util.multioutput + :members: + :undoc-members: + :show-inheritance: + +:mod:`netpbmfile` Module +------------------------ + +.. automodule:: GPy.util.netpbmfile + :members: + :undoc-members: + :show-inheritance: + +:mod:`pca` Module +----------------- + +.. automodule:: GPy.util.pca + :members: + :undoc-members: + :show-inheritance: + +:mod:`plot` Module +------------------ + +.. automodule:: GPy.util.plot + :members: + :undoc-members: + :show-inheritance: + +:mod:`plot_latent` Module +------------------------- + +.. automodule:: GPy.util.plot_latent + :members: + :undoc-members: + :show-inheritance: + +:mod:`squashers` Module +----------------------- + +.. automodule:: GPy.util.squashers + :members: + :undoc-members: + :show-inheritance: + +:mod:`symbolic` Module +---------------------- + +.. automodule:: GPy.util.symbolic + :members: + :undoc-members: + :show-inheritance: + +:mod:`univariate_Gaussian` Module +--------------------------------- + +.. automodule:: GPy.util.univariate_Gaussian + :members: + :undoc-members: + :show-inheritance: + +:mod:`visualize` Module +----------------------- + +.. automodule:: GPy.util.visualize + :members: + :undoc-members: + :show-inheritance: + +:mod:`warping_functions` Module +------------------------------- + +.. automodule:: GPy.util.warping_functions + :members: + :undoc-members: + :show-inheritance: Subpackages ----------- @@ -8,166 +184,3 @@ Subpackages GPy.util.latent_space_visualizations -Submodules ----------- - -GPy.util.Tango module ---------------------- - -.. automodule:: GPy.util.Tango - :members: - :undoc-members: - :show-inheritance: - -GPy.util.classification module ------------------------------- - -.. automodule:: GPy.util.classification - :members: - :undoc-members: - :show-inheritance: - -GPy.util.config module ----------------------- - -.. automodule:: GPy.util.config - :members: - :undoc-members: - :show-inheritance: - -GPy.util.datasets module ------------------------- - -.. automodule:: GPy.util.datasets - :members: - :undoc-members: - :show-inheritance: - -GPy.util.decorators module --------------------------- - -.. automodule:: GPy.util.decorators - :members: - :undoc-members: - :show-inheritance: - -GPy.util.erfcx module ---------------------- - -.. automodule:: GPy.util.erfcx - :members: - :undoc-members: - :show-inheritance: - -GPy.util.linalg module ----------------------- - -.. automodule:: GPy.util.linalg - :members: - :undoc-members: - :show-inheritance: - -GPy.util.ln_diff_erfs module ----------------------------- - -.. automodule:: GPy.util.ln_diff_erfs - :members: - :undoc-members: - :show-inheritance: - -GPy.util.misc module --------------------- - -.. automodule:: GPy.util.misc - :members: - :undoc-members: - :show-inheritance: - -GPy.util.mocap module ---------------------- - -.. automodule:: GPy.util.mocap - :members: - :undoc-members: - :show-inheritance: - -GPy.util.multioutput module ---------------------------- - -.. automodule:: GPy.util.multioutput - :members: - :undoc-members: - :show-inheritance: - -GPy.util.netpbmfile module --------------------------- - -.. automodule:: GPy.util.netpbmfile - :members: - :undoc-members: - :show-inheritance: - -GPy.util.plot module --------------------- - -.. automodule:: GPy.util.plot - :members: - :undoc-members: - :show-inheritance: - -GPy.util.plot_latent module ---------------------------- - -.. automodule:: GPy.util.plot_latent - :members: - :undoc-members: - :show-inheritance: - -GPy.util.squashers module -------------------------- - -.. automodule:: GPy.util.squashers - :members: - :undoc-members: - :show-inheritance: - -GPy.util.symbolic module ------------------------- - -.. automodule:: GPy.util.symbolic - :members: - :undoc-members: - :show-inheritance: - -GPy.util.univariate_Gaussian module ------------------------------------ - -.. automodule:: GPy.util.univariate_Gaussian - :members: - :undoc-members: - :show-inheritance: - -GPy.util.visualize module -------------------------- - -.. automodule:: GPy.util.visualize - :members: - :undoc-members: - :show-inheritance: - -GPy.util.warping_functions module ---------------------------------- - -.. automodule:: GPy.util.warping_functions - :members: - :undoc-members: - :show-inheritance: - - -Module contents ---------------- - -.. automodule:: GPy.util - :members: - :undoc-members: - :show-inheritance: