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Merge branch 'devel' of github.com:SheffieldML/GPy into devel

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Max Zwiessele 2013-11-27 13:16:19 +00:00
commit 546a9bd205
2 changed files with 42 additions and 30 deletions
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1
GPy/kern/kern.py
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@ -492,7 +492,6 @@ class kern(Parameterized):
eK2 = psi12.reshape(N, M, M) eK2 = psi12.reshape(N, M, M)
crossterms = eK2 * (psi11[:, :, None] + psi11[:, None, :]) crossterms = eK2 * (psi11[:, :, None] + psi11[:, None, :])
target += crossterms target += crossterms
#import ipdb;ipdb.set_trace()
else: else:
raise NotImplementedError, "psi2 cannot be computed for this kernel" raise NotImplementedError, "psi2 cannot be computed for this kernel"
return target return target

27
README.md
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@ -13,26 +13,39 @@ Getting started
=============== ===============
Installing with pip Installing with pip
------------------- -------------------
The simplest way to install GPy is using pip. The simplest way to install GPy is using pip. ubuntu users can do:
pip install gpy
sudo apt-get install python-pip
pip install gpy
If you'd like to install from source, or want to contribute to the project (e.g. by sending pull requests via github), read on.
Ubuntu Ubuntu
------ ------
For the most part, the developers are using ubuntu. To install the required packages: For the most part, the developers are using ubuntu. To install the required packages:
sudo apt-get install python-numpy python-scipy python-matplotlib
sudo apt-get install python-numpy python-scipy python-matplotlib
clone this git repository and add it to your path: clone this git repository and add it to your path:
git clone git@github.com:SheffieldML/GPy.git \<destination\>
echo "PYTHONPATH=$PYTHONPATH:\<detination\> > ~/.bashrc git clone git@github.com:SheffieldML/GPy.git ~/SheffieldML
echo 'PYTHONPATH=$PYTHONPATH:~/SheffieldML' >> ~/.bashrc
Windows Windows
------- -------
On windows, we recommend the ![anaconda python distribution](http://continuum.io/downloads). We've also had luck with ![enthought](http://www.enthought.com). git clone or unzip the source to a suitable directory, and add a PYTHONPATH environement variable. On windows, we recommend the ![anaconda python distribution](http://continuum.io/downloads). We've also had luck with ![enthought](http://www.enthought.com). git clone or unzip the source to a suitable directory, and add an approptiate PYTHONPATH environment variable.
On windows 7 (and possibly earlier versions) there's a bug in scipy version 0.13 which tries to write very long filenames. Reverting to scipy 0.12 seems to do the trick:
conda install scipy=0.12
OSX OSX
--- ---
everything appears to work out-of-the box using ![enthought](http://www.enthought.com) on osx Mavericks. Everything appears to work out-of-the box using ![enthought](http://www.enthought.com) on osx Mavericks. Download/clone GPy, and then add GPy to your PYTHONPATH
git clone git@github.com:SheffieldML/GPy.git ~/SheffieldML
echo 'PYTHONPATH=$PYTHONPATH:~/SheffieldML' >> ~/.profile
Compiling documentation: Compiling documentation: