coregionalisation changed to coregionalization

This commit is contained in:
Ricardo 2013-09-14 17:23:17 +01:00
parent 1bc9374717
commit 4bb2ea9606
9 changed files with 24 additions and 79 deletions

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@ -340,7 +340,7 @@ def symmetric(k):
k_.parts = [symmetric.Symmetric(p) for p in k.parts]
return k_
def coregionalise(num_outputs,W_columns=1, W=None, kappa=None):
def coregionalize(num_outputs,W_columns=1, W=None, kappa=None):
"""
Coregionlization matrix B, of the form:
.. math::
@ -352,18 +352,18 @@ def coregionalise(num_outputs,W_columns=1, W=None, kappa=None):
it is obtainded as the tensor product between a kernel k(x,y) and B.
:param num_outputs: the number of outputs to corregionalise
:param num_outputs: the number of outputs to coregionalize
:type num_outputs: int
:param W_columns: number of columns of the W matrix (this parameter is ignored if parameter W is not None)
:type W_colunns: int
:param W: a low rank matrix that determines the correlations between the different outputs, together with kappa it forms the coregionalisation matrix B
:param W: a low rank matrix that determines the correlations between the different outputs, together with kappa it forms the coregionalization matrix B
:type W: numpy array of dimensionality (num_outpus, W_columns)
:param kappa: a vector which allows the outputs to behave independently
:type kappa: numpy array of dimensionality (num_outputs,)
:rtype: kernel object
"""
p = parts.coregionalise.Coregionalise(num_outputs,W_columns,W,kappa)
p = parts.coregionalize.Coregionalize(num_outputs,W_columns,W,kappa)
return kern(1,[p])
@ -442,11 +442,11 @@ def build_lcm(input_dim, num_outputs, kernel_list = [], W_columns=1,W=None,kappa
k.input_dim = input_dim
warnings.warn("kernel's input dimension overwritten to fit input_dim parameter.")
k_coreg = coregionalise(num_outputs,W_columns,W,kappa)
k_coreg = coregionalize(num_outputs,W_columns,W,kappa)
kernel = kernel_list[0]**k_coreg.copy()
for k in kernel_list[1:]:
k_coreg = coregionalise(num_outputs,W_columns,W,kappa)
k_coreg = coregionalize(num_outputs,W_columns,W,kappa)
kernel += k**k_coreg.copy()
return kernel

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@ -1,6 +1,6 @@
import bias
import Brownian
import coregionalise
import coregionalize
import exponential
import finite_dimensional
import fixed

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@ -7,7 +7,7 @@ from GPy.util.linalg import mdot, pdinv
import pdb
from scipy import weave
class Coregionalise(Kernpart):
class Coregionalize(Kernpart):
"""
Kernel for intrinsic/linear coregionalization models
@ -25,12 +25,12 @@ class Coregionalise(Kernpart):
:type num_outputs: int
:param W_columns: number of columns of the W matrix (this parameter is ignored if parameter W is not None)
:type W_colunns: int
:param W: a low rank matrix that determines the correlations between the different outputs, together with kappa it forms the coregionalisation matrix B
:param W: a low rank matrix that determines the correlations between the different outputs, together with kappa it forms the coregionalization matrix B
:type W: numpy array of dimensionality (num_outpus, W_columns)
:param kappa: a vector which allows the outputs to behave independently
:type kappa: numpy array of dimensionality (num_outputs,)
.. Note: see coregionalisation examples in GPy.examples.regression for some usage.
.. Note: see coregionalization examples in GPy.examples.regression for some usage.
"""
def __init__(self,num_outputs,W_columns=1, W=None, kappa=None):
self.input_dim = 1

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@ -18,7 +18,7 @@ class Prod(Kernpart):
"""
def __init__(self,k1,k2,tensor=False):
self.num_params = k1.num_params + k2.num_params
self.name = '['+k1.name + '(x)' + k2.name +']'
self.name = '['+k1.name + '**' + k2.name +']'
self.k1 = k1
self.k2 = k2
if tensor: