Rebuilt documentation

2026-06-08 15:05:15 +02:00 · 2013-09-19 14:36:33 +01:00 · 2013-09-19 14:36:33 +01:00 · 474ef9b247
commit 474ef9b247
parent 6897cf34b5
14 changed files with 721 additions and 226 deletions
--- a/doc/GPy.core.rst
+++ b/doc/GPy.core.rst
@ -1,91 +1,102 @@
-core Package
-============
+GPy.core package
+================

-:mod:`core` Package
-------------------
+Submodules
+----------

-.. automodule:: GPy.core
-    :members:
-    :undoc-members:
-    :show-inheritance:
-
-:mod:`domains` Module
---------------------
+GPy.core.domains module
+-----------------------

 .. automodule:: GPy.core.domains
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`fitc` Module
------------------
+GPy.core.fitc module
+--------------------

 .. automodule:: GPy.core.fitc
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`gp` Module
----------------
+GPy.core.gp module
+------------------

 .. automodule:: GPy.core.gp
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`gp_base` Module
---------------------
+GPy.core.gp_base module
+-----------------------

 .. automodule:: GPy.core.gp_base
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`model` Module
-------------------
+GPy.core.mapping module
+-----------------------
+
+.. automodule:: GPy.core.mapping
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.core.model module
+---------------------

 .. automodule:: GPy.core.model
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`parameterized` Module
---------------------------
+GPy.core.parameterized module
+-----------------------------

 .. automodule:: GPy.core.parameterized
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`priors` Module
--------------------
+GPy.core.priors module
+----------------------

 .. automodule:: GPy.core.priors
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`sparse_gp` Module
-----------------------
+GPy.core.sparse_gp module
+-------------------------

 .. automodule:: GPy.core.sparse_gp
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`svigp` Module
-------------------
+GPy.core.svigp module
+---------------------

 .. automodule:: GPy.core.svigp
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`transformations` Module
-----------------------------
+GPy.core.transformations module
+-------------------------------

 .. automodule:: GPy.core.transformations
    :members:
    :undoc-members:
    :show-inheritance:

+
+Module contents
+---------------
+
+.. automodule:: GPy.core
+    :members:
+    :undoc-members:
+    :show-inheritance:
--- a/doc/GPy.examples.rst
+++ b/doc/GPy.examples.rst
@ -1,51 +1,54 @@
-examples Package
-================
+GPy.examples package
+====================

-:mod:`examples` Package
-----------------------
+Submodules
+----------

-.. automodule:: GPy.examples
-    :members:
-    :undoc-members:
-    :show-inheritance:
-
-:mod:`classification` Module
----------------------------
+GPy.examples.classification module
+----------------------------------

 .. automodule:: GPy.examples.classification
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`dimensionality_reduction` Module
--------------------------------------
+GPy.examples.dimensionality_reduction module
+--------------------------------------------

 .. automodule:: GPy.examples.dimensionality_reduction
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`regression` Module
------------------------
+GPy.examples.regression module
+------------------------------

 .. automodule:: GPy.examples.regression
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`stochastic` Module
------------------------
+GPy.examples.stochastic module
+------------------------------

 .. automodule:: GPy.examples.stochastic
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`tutorials` Module
-----------------------
+GPy.examples.tutorials module
+-----------------------------

 .. automodule:: GPy.examples.tutorials
    :members:
    :undoc-members:
    :show-inheritance:

+
+Module contents
+---------------
+
+.. automodule:: GPy.examples
+    :members:
+    :undoc-members:
+    :show-inheritance:
--- a/doc/GPy.inference.rst
+++ b/doc/GPy.inference.rst
@ -1,51 +1,62 @@
-inference Package
-=================
+GPy.inference package
+=====================

-:mod:`conjugate_gradient_descent` Module
----------------------------------------
+Submodules
+----------
+
+GPy.inference.conjugate_gradient_descent module
+-----------------------------------------------

 .. automodule:: GPy.inference.conjugate_gradient_descent
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`gradient_descent_update_rules` Module
-------------------------------------------
+GPy.inference.gradient_descent_update_rules module
+--------------------------------------------------

 .. automodule:: GPy.inference.gradient_descent_update_rules
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`optimization` Module
--------------------------
+GPy.inference.optimization module
+---------------------------------

 .. automodule:: GPy.inference.optimization
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`samplers` Module
----------------------
+GPy.inference.samplers module
+-----------------------------

 .. automodule:: GPy.inference.samplers
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`scg` Module
-----------------
+GPy.inference.scg module
+------------------------

 .. automodule:: GPy.inference.scg
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`sgd` Module
-----------------
+GPy.inference.sgd module
+------------------------

 .. automodule:: GPy.inference.sgd
    :members:
    :undoc-members:
    :show-inheritance:

+
+Module contents
+---------------
+
+.. automodule:: GPy.inference
+    :members:
+    :undoc-members:
+    :show-inheritance:
--- a/doc/GPy.kern.parts.rst
+++ b/doc/GPy.kern.parts.rst
@ -0,0 +1,246 @@
+GPy.kern.parts package
+======================
+
+Submodules
+----------
+
+GPy.kern.parts.Brownian module
+------------------------------
+
+.. automodule:: GPy.kern.parts.Brownian
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.kern.parts.Matern32 module
+------------------------------
+
+.. automodule:: GPy.kern.parts.Matern32
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.kern.parts.Matern52 module
+------------------------------
+
+.. automodule:: GPy.kern.parts.Matern52
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.kern.parts.bias module
+--------------------------
+
+.. automodule:: GPy.kern.parts.bias
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.kern.parts.coregionalize module
+-----------------------------------
+
+.. automodule:: GPy.kern.parts.coregionalize
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.kern.parts.exponential module
+---------------------------------
+
+.. automodule:: GPy.kern.parts.exponential
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.kern.parts.finite_dimensional module
+----------------------------------------
+
+.. automodule:: GPy.kern.parts.finite_dimensional
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.kern.parts.fixed module
+---------------------------
+
+.. automodule:: GPy.kern.parts.fixed
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.kern.parts.gibbs module
+---------------------------
+
+.. automodule:: GPy.kern.parts.gibbs
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.kern.parts.hetero module
+----------------------------
+
+.. automodule:: GPy.kern.parts.hetero
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.kern.parts.hierarchical module
+----------------------------------
+
+.. automodule:: GPy.kern.parts.hierarchical
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.kern.parts.independent_outputs module
+-----------------------------------------
+
+.. automodule:: GPy.kern.parts.independent_outputs
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.kern.parts.kernpart module
+------------------------------
+
+.. automodule:: GPy.kern.parts.kernpart
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.kern.parts.linear module
+----------------------------
+
+.. automodule:: GPy.kern.parts.linear
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.kern.parts.mlp module
+-------------------------
+
+.. automodule:: GPy.kern.parts.mlp
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.kern.parts.periodic_Matern32 module
+---------------------------------------
+
+.. automodule:: GPy.kern.parts.periodic_Matern32
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.kern.parts.periodic_Matern52 module
+---------------------------------------
+
+.. automodule:: GPy.kern.parts.periodic_Matern52
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.kern.parts.periodic_exponential module
+------------------------------------------
+
+.. automodule:: GPy.kern.parts.periodic_exponential
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.kern.parts.poly module
+--------------------------
+
+.. automodule:: GPy.kern.parts.poly
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.kern.parts.prod module
+--------------------------
+
+.. automodule:: GPy.kern.parts.prod
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.kern.parts.prod_orthogonal module
+-------------------------------------
+
+.. automodule:: GPy.kern.parts.prod_orthogonal
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.kern.parts.rational_quadratic module
+----------------------------------------
+
+.. automodule:: GPy.kern.parts.rational_quadratic
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.kern.parts.rbf module
+-------------------------
+
+.. automodule:: GPy.kern.parts.rbf
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.kern.parts.rbf_inv module
+-----------------------------
+
+.. automodule:: GPy.kern.parts.rbf_inv
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.kern.parts.rbfcos module
+----------------------------
+
+.. automodule:: GPy.kern.parts.rbfcos
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.kern.parts.spline module
+----------------------------
+
+.. automodule:: GPy.kern.parts.spline
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.kern.parts.symmetric module
+-------------------------------
+
+.. automodule:: GPy.kern.parts.symmetric
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.kern.parts.sympykern module
+-------------------------------
+
+.. automodule:: GPy.kern.parts.sympykern
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.kern.parts.white module
+---------------------------
+
+.. automodule:: GPy.kern.parts.white
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: GPy.kern.parts
+    :members:
+    :undoc-members:
+    :show-inheritance:
--- a/doc/GPy.kern.rst
+++ b/doc/GPy.kern.rst
@ -1,29 +1,5 @@
-kern Package
-============
-
-:mod:`kern` Package
-------------------
-
-.. automodule:: GPy.kern
-    :members:
-    :undoc-members:
-    :show-inheritance:
-
-:mod:`constructors` Module
--------------------------
-
-.. automodule:: GPy.kern.constructors
-    :members:
-    :undoc-members:
-    :show-inheritance:
-
-:mod:`kern` Module
------------------
-
-.. automodule:: GPy.kern.kern
-    :members:
-    :undoc-members:
-    :show-inheritance:
+GPy.kern package
+================

 Subpackages
 -----------
@ -32,3 +8,30 @@ Subpackages

    GPy.kern.parts

+Submodules
+----------
+
+GPy.kern.constructors module
+----------------------------
+
+.. automodule:: GPy.kern.constructors
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.kern.kern module
+--------------------
+
+.. automodule:: GPy.kern.kern
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: GPy.kern
+    :members:
+    :undoc-members:
+    :show-inheritance:
--- a/doc/GPy.likelihoods.noise_models.rst
+++ b/doc/GPy.likelihoods.noise_models.rst
@ -0,0 +1,70 @@
+GPy.likelihoods.noise_models package
+====================================
+
+Submodules
+----------
+
+GPy.likelihoods.noise_models.binomial_noise module
+--------------------------------------------------
+
+.. automodule:: GPy.likelihoods.noise_models.binomial_noise
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.likelihoods.noise_models.exponential_noise module
+-----------------------------------------------------
+
+.. automodule:: GPy.likelihoods.noise_models.exponential_noise
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.likelihoods.noise_models.gamma_noise module
+-----------------------------------------------
+
+.. automodule:: GPy.likelihoods.noise_models.gamma_noise
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.likelihoods.noise_models.gaussian_noise module
+--------------------------------------------------
+
+.. automodule:: GPy.likelihoods.noise_models.gaussian_noise
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.likelihoods.noise_models.gp_transformations module
+------------------------------------------------------
+
+.. automodule:: GPy.likelihoods.noise_models.gp_transformations
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.likelihoods.noise_models.noise_distributions module
+-------------------------------------------------------
+
+.. automodule:: GPy.likelihoods.noise_models.noise_distributions
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.likelihoods.noise_models.poisson_noise module
+-------------------------------------------------
+
+.. automodule:: GPy.likelihoods.noise_models.poisson_noise
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: GPy.likelihoods.noise_models
+    :members:
+    :undoc-members:
+    :show-inheritance:
--- a/doc/GPy.likelihoods.rst
+++ b/doc/GPy.likelihoods.rst
@ -1,51 +1,69 @@
-likelihoods Package
-===================
+GPy.likelihoods package
+=======================

-:mod:`likelihoods` Package
--------------------------
+Subpackages
+-----------

-.. automodule:: GPy.likelihoods
-    :members:
-    :undoc-members:
-    :show-inheritance:
+.. toctree::

-:mod:`ep` Module
----------------
+    GPy.likelihoods.noise_models
+
+Submodules
+----------
+
+GPy.likelihoods.ep module
+-------------------------

 .. automodule:: GPy.likelihoods.ep
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`gaussian` Module
----------------------
+GPy.likelihoods.ep_mixed_noise module
+-------------------------------------
+
+.. automodule:: GPy.likelihoods.ep_mixed_noise
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.likelihoods.gaussian module
+-------------------------------

 .. automodule:: GPy.likelihoods.gaussian
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`likelihood` Module
------------------------
+GPy.likelihoods.gaussian_mixed_noise module
+-------------------------------------------
+
+.. automodule:: GPy.likelihoods.gaussian_mixed_noise
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.likelihoods.likelihood module
+---------------------------------

 .. automodule:: GPy.likelihoods.likelihood
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`likelihood_functions` Module
----------------------------------
+GPy.likelihoods.noise_model_constructors module
+-----------------------------------------------

-.. automodule:: GPy.likelihoods.likelihood_functions
+.. automodule:: GPy.likelihoods.noise_model_constructors
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`link_functions` Module
----------------------------

-.. automodule:: GPy.likelihoods.link_functions
+Module contents
+---------------
+
+.. automodule:: GPy.likelihoods
    :members:
    :undoc-members:
    :show-inheritance:
-
--- a/doc/GPy.mappings.rst
+++ b/doc/GPy.mappings.rst
@ -0,0 +1,38 @@
+GPy.mappings package
+====================
+
+Submodules
+----------
+
+GPy.mappings.kernel module
+--------------------------
+
+.. automodule:: GPy.mappings.kernel
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.mappings.linear module
+--------------------------
+
+.. automodule:: GPy.mappings.linear
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.mappings.mlp module
+-----------------------
+
+.. automodule:: GPy.mappings.mlp
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: GPy.mappings
+    :members:
+    :undoc-members:
+    :show-inheritance:
--- a/doc/GPy.models.rst
+++ b/doc/GPy.models.rst
@ -1,99 +1,134 @@
-models Package
-==============
+GPy.models package
+==================

-:mod:`models` Package
---------------------
+Submodules
+----------

-.. automodule:: GPy.models
-    :members:
-    :undoc-members:
-    :show-inheritance:
-
-:mod:`bayesian_gplvm` Module
----------------------------
+GPy.models.bayesian_gplvm module
+--------------------------------

 .. automodule:: GPy.models.bayesian_gplvm
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`fitc_classification` Module
---------------------------------
+GPy.models.bcgplvm module
+-------------------------
+
+.. automodule:: GPy.models.bcgplvm
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.models.fitc_classification module
+-------------------------------------

 .. automodule:: GPy.models.fitc_classification
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`gp_classification` Module
-------------------------------
+GPy.models.gp_classification module
+-----------------------------------

 .. automodule:: GPy.models.gp_classification
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`gp_regression` Module
---------------------------
+GPy.models.gp_multioutput_regression module
+-------------------------------------------
+
+.. automodule:: GPy.models.gp_multioutput_regression
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.models.gp_regression module
+-------------------------------

 .. automodule:: GPy.models.gp_regression
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`gplvm` Module
-------------------
+GPy.models.gplvm module
+-----------------------

 .. automodule:: GPy.models.gplvm
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`mrd` Module
-----------------
+GPy.models.gradient_checker module
+----------------------------------
+
+.. automodule:: GPy.models.gradient_checker
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.models.mrd module
+---------------------

 .. automodule:: GPy.models.mrd
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`sparse_gp_classification` Module
--------------------------------------
+GPy.models.sparse_gp_classification module
+------------------------------------------

 .. automodule:: GPy.models.sparse_gp_classification
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`sparse_gp_regression` Module
----------------------------------
+GPy.models.sparse_gp_multioutput_regression module
+--------------------------------------------------
+
+.. automodule:: GPy.models.sparse_gp_multioutput_regression
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.models.sparse_gp_regression module
+--------------------------------------

 .. automodule:: GPy.models.sparse_gp_regression
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`sparse_gplvm` Module
--------------------------
+GPy.models.sparse_gplvm module
+------------------------------

 .. automodule:: GPy.models.sparse_gplvm
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`svigp_regression` Module
------------------------------
+GPy.models.svigp_regression module
+----------------------------------

 .. automodule:: GPy.models.svigp_regression
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`warped_gp` Module
-----------------------
+GPy.models.warped_gp module
+---------------------------

 .. automodule:: GPy.models.warped_gp
    :members:
    :undoc-members:
    :show-inheritance:

+
+Module contents
+---------------
+
+.. automodule:: GPy.models
+    :members:
+    :undoc-members:
+    :show-inheritance:
--- a/doc/GPy.rst
+++ b/doc/GPy.rst
@ -1,14 +1,6 @@
-GPy Package
+GPy package
 ===========

-:mod:`GPy` Package
------------------
-
-.. automodule:: GPy.__init__
-    :members:
-    :undoc-members:
-    :show-inheritance:
-
 Subpackages
 -----------

@ -19,7 +11,15 @@ Subpackages
    GPy.inference
    GPy.kern
    GPy.likelihoods
+    GPy.mappings
    GPy.models
    GPy.testing
    GPy.util

+Module contents
+---------------
+
+.. automodule:: GPy
+    :members:
+    :undoc-members:
+    :show-inheritance:
--- a/doc/GPy.testing.rst
+++ b/doc/GPy.testing.rst
@ -1,107 +1,110 @@
-testing Package
-===============
+GPy.testing package
+===================

-:mod:`testing` Package
----------------------
+Submodules
+----------

-.. automodule:: GPy.testing
-    :members:
-    :undoc-members:
-    :show-inheritance:
-
-:mod:`bgplvm_tests` Module
--------------------------
+GPy.testing.bgplvm_tests module
+-------------------------------

 .. automodule:: GPy.testing.bgplvm_tests
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`cgd_tests` Module
-----------------------
+GPy.testing.cgd_tests module
+----------------------------

 .. automodule:: GPy.testing.cgd_tests
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`checkgrad` Module
-----------------------
-
-.. automodule:: GPy.testing.checkgrad
-    :members:
-    :undoc-members:
-    :show-inheritance:
-
-:mod:`examples_tests` Module
----------------------------
+GPy.testing.examples_tests module
+---------------------------------

 .. automodule:: GPy.testing.examples_tests
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`gplvm_tests` Module
-------------------------
+GPy.testing.gplvm_tests module
+------------------------------

 .. automodule:: GPy.testing.gplvm_tests
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`kernel_tests` Module
--------------------------
+GPy.testing.kernel_tests module
+-------------------------------

 .. automodule:: GPy.testing.kernel_tests
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`mrd_tests` Module
-----------------------
+GPy.testing.mapping_tests module
+--------------------------------
+
+.. automodule:: GPy.testing.mapping_tests
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.testing.mrd_tests module
+----------------------------

 .. automodule:: GPy.testing.mrd_tests
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`prior_tests` Module
-------------------------
+GPy.testing.prior_tests module
+------------------------------

 .. automodule:: GPy.testing.prior_tests
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`psi_stat_expactation_tests` Module
----------------------------------------
+GPy.testing.psi_stat_expectation_tests module
+---------------------------------------------

-.. automodule:: GPy.testing.psi_stat_expactation_tests
+.. automodule:: GPy.testing.psi_stat_expectation_tests
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`psi_stat_gradient_tests` Module
-------------------------------------
+GPy.testing.psi_stat_gradient_tests module
+------------------------------------------

 .. automodule:: GPy.testing.psi_stat_gradient_tests
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`sparse_gplvm_tests` Module
--------------------------------
+GPy.testing.sparse_gplvm_tests module
+-------------------------------------

 .. automodule:: GPy.testing.sparse_gplvm_tests
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`unit_tests` Module
------------------------
+GPy.testing.unit_tests module
+-----------------------------

 .. automodule:: GPy.testing.unit_tests
    :members:
    :undoc-members:
    :show-inheritance:

+
+Module contents
+---------------
+
+.. automodule:: GPy.testing
+    :members:
+    :undoc-members:
+    :show-inheritance:
--- a/doc/GPy.util.latent_space_visualizations.controllers.rst
+++ b/doc/GPy.util.latent_space_visualizations.controllers.rst
@ -0,0 +1,30 @@
+GPy.util.latent_space_visualizations.controllers package
+========================================================
+
+Submodules
+----------
+
+GPy.util.latent_space_visualizations.controllers.axis_event_controller module
+-----------------------------------------------------------------------------
+
+.. automodule:: GPy.util.latent_space_visualizations.controllers.axis_event_controller
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+GPy.util.latent_space_visualizations.controllers.imshow_controller module
+-------------------------------------------------------------------------
+
+.. automodule:: GPy.util.latent_space_visualizations.controllers.imshow_controller
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+
+Module contents
+---------------
+
+.. automodule:: GPy.util.latent_space_visualizations.controllers
+    :members:
+    :undoc-members:
+    :show-inheritance:
--- a/doc/GPy.util.latent_space_visualizations.rst
+++ b/doc/GPy.util.latent_space_visualizations.rst
@ -0,0 +1,17 @@
+GPy.util.latent_space_visualizations package
+============================================
+
+Subpackages
+-----------
+
+.. toctree::
+
+    GPy.util.latent_space_visualizations.controllers
+
+Module contents
+---------------
+
+.. automodule:: GPy.util.latent_space_visualizations
+    :members:
+    :undoc-members:
+    :show-inheritance:
--- a/doc/GPy.util.rst
+++ b/doc/GPy.util.rst
@ -1,123 +1,133 @@
-util Package
-============
+GPy.util package
+================

-:mod:`util` Package
-------------------
+Subpackages
+-----------

-.. automodule:: GPy.util
-    :members:
-    :undoc-members:
-    :show-inheritance:
+.. toctree::

-:mod:`Tango` Module
-------------------
+    GPy.util.latent_space_visualizations
+
+Submodules
+----------
+
+GPy.util.Tango module
+---------------------

 .. automodule:: GPy.util.Tango
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`classification` Module
----------------------------
+GPy.util.classification module
+------------------------------

 .. automodule:: GPy.util.classification
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`datasets` Module
----------------------
+GPy.util.datasets module
+------------------------

 .. automodule:: GPy.util.datasets
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`decorators` Module
------------------------
+GPy.util.decorators module
+--------------------------

 .. automodule:: GPy.util.decorators
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`linalg` Module
--------------------
+GPy.util.linalg module
+----------------------

 .. automodule:: GPy.util.linalg
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`misc` Module
------------------
+GPy.util.misc module
+--------------------

 .. automodule:: GPy.util.misc
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`mocap` Module
-------------------
+GPy.util.mocap module
+---------------------

 .. automodule:: GPy.util.mocap
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`pca` Module
-----------------
+GPy.util.multioutput module
+---------------------------

-.. automodule:: GPy.util.pca
+.. automodule:: GPy.util.multioutput
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`plot` Module
------------------
+GPy.util.plot module
+--------------------

 .. automodule:: GPy.util.plot
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`plot_latent` Module
-------------------------
+GPy.util.plot_latent module
+---------------------------

 .. automodule:: GPy.util.plot_latent
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`squashers` Module
-----------------------
+GPy.util.squashers module
+-------------------------

 .. automodule:: GPy.util.squashers
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`univariate_Gaussian` Module
---------------------------------
+GPy.util.univariate_Gaussian module
+-----------------------------------

 .. automodule:: GPy.util.univariate_Gaussian
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`visualize` Module
-----------------------
+GPy.util.visualize module
+-------------------------

 .. automodule:: GPy.util.visualize
    :members:
    :undoc-members:
    :show-inheritance:

-:mod:`warping_functions` Module
-------------------------------
+GPy.util.warping_functions module
+---------------------------------

 .. automodule:: GPy.util.warping_functions
    :members:
    :undoc-members:
    :show-inheritance:

+
+Module contents
+---------------
+
+.. automodule:: GPy.util
+    :members:
+    :undoc-members:
+    :show-inheritance: