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Merged with upstream

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Alan Saul 2013-05-07 13:41:05 +01:00
commit 2bb794120d
23 changed files with 1238 additions and 580 deletions
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13
GPy/models/GP.py
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@ -36,6 +36,9 @@ class GP(model):
self.N, self.Q = self.X.shape
assert isinstance(kernel, kern.kern)
self.kern = kernel
self.likelihood = likelihood
assert self.X.shape[0] == self.likelihood.data.shape[0]
self.N, self.D = self.likelihood.data.shape
# here's some simple normalization for the inputs
if normalize_X:
@ -48,12 +51,8 @@ class GP(model):
self._Xmean = np.zeros((1, self.X.shape[1]))
self._Xstd = np.ones((1, self.X.shape[1]))
self.likelihood = likelihood
# assert self.X.shape[0] == self.likelihood.Y.shape[0]
# self.N, self.D = self.likelihood.Y.shape
assert self.X.shape[0] == self.likelihood.data.shape[0]
self.N, self.D = self.likelihood.data.shape
if not hasattr(self,'has_uncertain_inputs'):
self.has_uncertain_inputs = False
model.__init__(self)
def dL_dZ(self):
@ -250,7 +249,7 @@ class GP(model):
else:
raise NotImplementedError, "Cannot define a frame with more than two input dimensions"
def plot(self, samples=0, plot_limits=None, which_data='all', which_functions='all', which_parts='all', resolution=None, levels=20):
def plot(self, samples=0, plot_limits=None, which_data='all', which_parts='all', resolution=None, levels=20):
"""
TODO: Docstrings!
:param levels: for 2D plotting, the number of contour levels to use